FFCP PHASE1:Hg19::chr17:40556968..40557001,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:40556968..40557001,- to FFCP PHASE1:Hg19::chr17:40556968..40557001,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=284119 | |EntrezGene=284119 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=9688 | |HGNC=9688 | ||
|TSSclassifier=strong | |||
|UniProt=Q6NZI2 | |UniProt=Q6NZI2 | ||
|association_with_transcript=308bp_to_BC004295_5end | |||
|cluster_id=chr17:40556968..40557001,- | |||
|description=CAGE_peak_7_at_PTRF_5end | |||
|id=chr17:40556968..40557001,- | |||
|ontology_enrichment_celltype=CL:0000055!1.13e-22!180;CL:0000222!2.52e-15!119;CL:0000057!2.77e-13!75;CL:0000220!6.68e-13!246;CL:0002321!8.80e-13!248;CL:0000680!1.20e-08!57;CL:0000056!1.20e-08!57;CL:0000355!1.20e-08!57;CL:0000136!1.79e-08!15;CL:0000213!2.29e-08!57;CL:0000215!2.29e-08!57;CL:0000187!5.24e-08!54;CL:0000192!1.68e-07!42;CL:0000514!1.68e-07!42;CL:0000144!1.79e-07!625;CL:0000183!2.98e-07!59;CL:0002371!8.56e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:0002334;1.15e-09;12!CL:0000136;4.59e-09;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,2.32e-11,121;CL:0000057,2.72e-11,76;CL:0000136,1.55e-10,15;CL:0002334,6.50e-10,12;CL:0000680,4.40e-07,58;CL:0000056,4.40e-07,58;CL:0000355,4.40e-07,58;CL:0000192,4.91e-07,43;CL:0000514,4.91e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!5.17e-14!79;UBERON:0007798!5.17e-14!79;UBERON:0000055!2.15e-13!69;UBERON:0001981!5.91e-13!60;UBERON:0007500!5.91e-13!60;UBERON:0004537!5.91e-13!60;UBERON:0006965!5.91e-13!60;UBERON:0004872!5.57e-12!84;UBERON:0003102!2.32e-11!95;UBERON:0001637!5.76e-11!42;UBERON:0003509!5.76e-11!42;UBERON:0004572!5.76e-11!42;UBERON:0000486!6.73e-11!82;UBERON:0000490!1.03e-10!138;UBERON:0000914!1.77e-10!83;UBERON:0002329!1.77e-10!83;UBERON:0003077!1.77e-10!83;UBERON:0003059!1.77e-10!83;UBERON:0007282!1.77e-10!83;UBERON:0009618!1.77e-10!83;UBERON:0007285!1.77e-10!83;UBERON:0004290!2.36e-09!70;UBERON:0002100!3.88e-09!216;UBERON:0005256!6.48e-09!143;UBERON:0000468!6.77e-09!659;UBERON:0002385!9.43e-09!63;UBERON:0001015!9.43e-09!63;UBERON:0000383!9.43e-09!63;UBERON:0001134!2.32e-08!61;UBERON:0002036!2.32e-08!61;UBERON:0003082!2.32e-08!61;UBERON:0004573!3.06e-08!33;UBERON:0004571!3.06e-08!33;UBERON:0003914!6.78e-08!118;UBERON:0001009!7.51e-08!113;UBERON:0004535!1.10e-07!110;UBERON:0002199!1.23e-07!45;UBERON:0002416!1.23e-07!45;UBERON:0000475!1.63e-07!365;UBERON:0006914!5.84e-07!25;UBERON:0000467!8.44e-07!625 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;3.77e-08;42!UBERON:0003509;3.77e-08;42!UBERON:0004572;3.77e-08;42!UBERON:0007500;1.67e-07;56!UBERON:0001981;1.67e-07;56!UBERON:0004537;1.67e-07;56!UBERON:0003688;3.37e-07;6!UBERON:0002358;3.37e-07;6!UBERON:0003684;3.37e-07;6!UBERON:0001178;3.37e-07;6!UBERON:0000055;7.81e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000055,8.99e-13,68;UBERON:0007500,9.51e-13,59;UBERON:0001981,9.51e-13,59;UBERON:0004537,9.51e-13,59;UBERON:0006965,9.51e-13,59;UBERON:0001637,4.06e-11,42;UBERON:0003509,4.06e-11,42;UBERON:0004572,4.06e-11,42;UBERON:0002049,5.22e-11,78;UBERON:0007798,5.22e-11,78;UBERON:0004872,1.13e-09,83;UBERON:0003102,6.80e-08,99;UBERON:0004573,8.48e-08,33;UBERON:0004571,8.48e-08,33;UBERON:0002199,1.22e-07,46;UBERON:0002416,1.22e-07,46;UBERON:0000490,5.32e-07,148;UBERON:0003688,5.74e-07,6;UBERON:0002358,5.74e-07,6;UBERON:0003684,5.74e-07,6;UBERON:0001178,5.74e-07,6;UBERON:0007524,6.09e-07,73;UBERON:0002385,7.01e-07,64;UBERON:0001015,7.01e-07,64;UBERON:0000383,7.01e-07,64 | |||
|phase1_expression=11.4457378940451,7.06531728840244,5.49722175974288,1.0007329835313,2.68176656656373,4.36169262050184,10.1319951267324,5.05375898741465,1.56711376919903,0.491467873003018,0.697801167972428,0.218441372130172,0.263766978228454,0.866364470720326,0.662794751455832,2.01697543935533,0.602694528023977,0,1.46379839637152,0.123121058076788,1.02000345622126,0.313454721478088,0.572471974262113,0.547497700291537,1.38096903554283,0,0,0,0,0,0,0.919421224478927,0.6024118375565,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.895037932904712,1.0843174571537,2.50668955317945,3.0417768981773,0.795285947051099,0.973269740605272,0.567208902984407,1.10864698731282,0.702678285545008,0.0654895377488563,0.364295288292542,0,0,0,0.132957960518865,0,0,0,0.79504962946682,2.58070378531837,1.04142150482278,0.56530794192401,2.09749718104953,3.30141650328081,1.67195973229448,1.03366703667732,1.42306505074684,0.66944122552934,3.22263453687318,0,3.1728067481262,0.735326160691737,4.0507097394088,1.25019619597712,0.898117490504679,0.788280363383256,3.06633274931766,1.89853131913626,1.46561395144326,0,0,0.872188104285069,1.49091585508596,3.92554586160197,0.132409180813219,0.573673241497627,3.90135220418193,0.560677600142307,0,4.19334832309172,0.933633106199299,0.538842688278752,0.326923806226917,0.151357427644931,0,0,0.936480230490962,0.570471821544449,2.24173020827702,0.352303495931295,0.485618833104395,0.561803226808994,0.61246251376468,0.737005903870608,0.103325781175765,2.37600571456411,5.43987244412825,2.73048408581408,1.43723628363248,0.673344455816265,0.750711119231785,0,1.75591048352335,3.0648779579902,3.15499923703853,0.226864366320042,1.25572744982203,1.49490172172997,1.69545520927649,1.50045548042201,1.13357782162283,1.03056216018252,1.30281799432113,1.5189869901714,1.36411807225678,1.26216887122057,2.02509777013059,1.77810662500693,0.710019185033229,1.5112814734146,0.847802961552438,0.966304265816484,2.72746120590835,1.43402297694502,0.121973706129595,0.132529768321485,0.116193942869518,0,0.252320850875628,0,0,3.21620469096443,1.38134921352481,2.3218396401599,3.60939740834793,0.236613600079688,0.505754070234305,0.723033089650446,0.992645754591546,0.217879444092406,0,0.269662616320329,0.392442930250692,0.769494313892781,1.4763109092493,0,0.8231480226628,2.94017422771084,0,0,0.590789906681404,0,0.245976877086227,0.686271241194102,0.878002283269004,0,0.502644862058154,0.185176890317059,0.651616610620649,1.03993478527958,0,0.115930404975077,0.352226082707465,0.866198686566443,0,0.380508304469197,0,0,0,0,0,0,0.335964256397719,0.283550194484773,0.358234090811393,0,0.766765358330422,0.492663237895943,0.44024217006613,1.86595303986695,1.72943944100354,2.27236380167484,0.126995788584338,1.14596527667483,1.17217447210047,6.84289784090821,0.102827492703324,0.300343057843917,0.285826432630578,0,0,0.66004457238855,0.904902010304444,0,2.535908257668,0.797814349754612,1.04007436911366,0.514414748524284,2.83698264046557,0.799266537048298,0.428933980974443,0.542621605391443,0.823240336780769,0.977208552881205,0.355391948742546,0.791951872933429,1.80863626235752,0.871533458600294,1.3996218765488,0,0,0,1.91699884393266,2.29723871668228,0,1.59259437334337,1.2328579353023,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,0.736148950314839,1.00034104211935,0.542530047399471,4.57535895367776,4.46072471992904,2.36553622550902,2.45996971484698,1.50473049863859,13.6444502433591,3.10419213877515,0,2.02806085395873,2.86715927744673,0.391602314925481,0,0,0,0,3.03127571446259,0,0.604780586659361,5.21026396419431,1.99500565274481,4.77122160536225,3.97231362692673,4.09365799253363,3.21707842287215,0,1.3878872442239,4.79416658345443,1.39616165223476,2.07701771673448,1.39452454151951,0.604297247958111,10.0253235151642,0.460404944679482,1.7222167224691,1.45672934405374,2.75361271414791,0.451199612907412,0.0770153371044148,0,2.92278449306521,0.105551628892876,0,0.850468526382578,1.51141141271498,0,0.270946437543853,0,0.254876273045038,0,0.447749509444357,0,0,0,0,0.650756789328606,0.309123034943167,0,0.247528499761764,0,3.25030123018261,14.4615536859744,1.54673149267395,0.462145851343933,0.15350367472613,0.413509717453592,0.429680979473094,1.74020032697074,0.596586391912706,1.24644849905432,1.15699440752685,1.34533047155574,0.255225424989168,0.50578890427775,4.64845549297286,1.88887408098384,0,0.924100740528266,1.06461206063404,0,1.8532421910392,0.715624433709956,0.372158369359667,0.632758849437452,0.190630193923825,0.767693373934002,0.855877976067841,0.318203247925937,3.13979456079692,0.179872457583315,1.64722217841633,0.235624804691373,1.2130948894399,3.17020642346017,0.421258456238981,0,1.46228093778771,5.28250733783777,1.09199929126389,1.27264888758341,3.39024349860728,2.75682671773062,1.32687795048244,4.38450885253763,1.15755106853338,1.31178950409327,0.405820753925408,1.5491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|short_description=p7@PTRF | |||
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Latest revision as of 14:40, 24 September 2015
Short description: | p7@PTRF |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_PTRF_5end |
Coexpression cluster: | NA |
Association with transcript: | 308bp_to_BC004295_5end |
EntrezGene: | PTRF |
HGNC: | 9688 |
UniProt: | Q6NZI2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 2.32e-11 | 121 |
fibroblast | 2.72e-11 | 76 |
fat cell | 1.55e-10 | 15 |
preadipocyte | 6.50e-10 | 12 |
muscle precursor cell | 4.40e-07 | 58 |
myoblast | 4.40e-07 | 58 |
multi-potent skeletal muscle stem cell | 4.40e-07 | 58 |
smooth muscle cell | 4.91e-07 | 43 |
smooth muscle myoblast | 4.91e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
vessel | 8.99e-13 | 68 |
epithelial tube open at both ends | 9.51e-13 | 59 |
blood vessel | 9.51e-13 | 59 |
blood vasculature | 9.51e-13 | 59 |
vascular cord | 9.51e-13 | 59 |
artery | 4.06e-11 | 42 |
arterial blood vessel | 4.06e-11 | 42 |
arterial system | 4.06e-11 | 42 |
vasculature | 5.22e-11 | 78 |
vascular system | 5.22e-11 | 78 |
splanchnic layer of lateral plate mesoderm | 1.13e-09 | 83 |
surface structure | 6.80e-08 | 99 |
systemic artery | 8.48e-08 | 33 |
systemic arterial system | 8.48e-08 | 33 |
integument | 1.22e-07 | 46 |
integumental system | 1.22e-07 | 46 |
unilaminar epithelium | 5.32e-07 | 148 |
omentum | 5.74e-07 | 6 |
peritoneum | 5.74e-07 | 6 |
abdominal cavity | 5.74e-07 | 6 |
visceral peritoneum | 5.74e-07 | 6 |
dense mesenchyme tissue | 6.09e-07 | 73 |
muscle tissue | 7.01e-07 | 64 |
musculature | 7.01e-07 | 64 |
musculature of body | 7.01e-07 | 64 |