FFCP PHASE1:Hg19::chr20:19866942..19866950,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr20:19866942..19866950,+
|short_description=p34@RIN2
|description=CAGE_peak_34_at_RIN2_5end
|association_with_transcript=-214bp_to_ENST00000255006,NM_00124258...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=54453 | |EntrezGene=54453 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18750 | |HGNC=18750 | ||
|TSSclassifier=strong | |||
|UniProt=Q8WYP3 | |UniProt=Q8WYP3 | ||
|association_with_transcript=-214bp_to_ENST00000255006,NM_001242581_5end | |||
|cluster_id=chr20:19866942..19866950,+ | |||
|description=CAGE_peak_34_at_RIN2_5end | |||
|id=chr20:19866942..19866950,+ | |||
|ontology_enrichment_celltype=CL:0002139!3.83e-11!24;CL:0000115!3.32e-08!35;CL:0005020!2.96e-07!6;CL:0002138!2.96e-07!6;CL:0005022!2.96e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000306;3.26e-11;4!CL:0002222;3.26e-11;4!CL:0002224;3.26e-11;4!CL:0002149;5.54e-08;6!CL:0002255;5.54e-08;6!CL:0002138;6.55e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000306,3.10e-11,4;CL:0002222,3.10e-11,4;CL:0002224,3.10e-11,4;CL:0002149,5.54e-08,6;CL:0002255,5.54e-08,6;CL:0005020,7.25e-08,6;CL:0002138,7.25e-08,6;CL:0005022,7.25e-08,6 | |||
|ontology_enrichment_development_v019=UBERON:0007123;3.10e-09;5!CL:0005022;6.55e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3001;5.54e-08;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3001,5.54e-08,6 | |||
|ontology_enrichment_uberon=UBERON:0001893!3.26e-16!34;UBERON:0002619!7.97e-16!22;UBERON:0001869!1.76e-15!32;UBERON:0001950!4.32e-15!20;UBERON:0003056!7.27e-15!61;UBERON:0002791!9.62e-15!33;UBERON:0002780!2.21e-14!41;UBERON:0001890!2.21e-14!41;UBERON:0006240!2.21e-14!41;UBERON:0003080!6.15e-14!42;UBERON:0000956!1.28e-13!25;UBERON:0000203!1.28e-13!25;UBERON:0003075!4.61e-13!86;UBERON:0007284!4.61e-13!86;UBERON:0002020!1.75e-12!34;UBERON:0003528!1.75e-12!34;UBERON:0002346!3.50e-12!90;UBERON:0001049!1.48e-11!57;UBERON:0005068!1.48e-11!57;UBERON:0006241!1.48e-11!57;UBERON:0007135!1.48e-11!57;UBERON:0002616!5.27e-11!59;UBERON:0000477!7.87e-11!286;UBERON:0004111!6.86e-10!241;UBERON:0000955!1.46e-09!69;UBERON:0006238!1.46e-09!69;UBERON:0005743!2.18e-09!86;UBERON:0001017!3.70e-09!82;UBERON:0000025!4.25e-09!194;UBERON:0000033!1.48e-08!123;UBERON:0001871!2.23e-08!7;UBERON:0001872!3.36e-08!5;UBERON:0000349!3.36e-08!5;UBERON:0000073!5.47e-08!94;UBERON:0001016!5.47e-08!94;UBERON:0007023!7.23e-08!115;UBERON:0000153!7.44e-08!129;UBERON:0007811!7.44e-08!129;UBERON:0002049!7.89e-08!79;UBERON:0007798!7.89e-08!79;UBERON:0000119!1.02e-07!312;UBERON:0000055!1.37e-07!69;UBERON:0000483!2.29e-07!309;UBERON:0000200!8.91e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0010077;3.26e-11;4!UBERON:0005389;3.26e-11;4!UBERON:0000484;3.26e-11;4!UBERON:0000965;3.26e-11;4!UBERON:0001803;3.26e-11;4!UBERON:0002046;3.10e-09;5!UBERON:0001871;5.86e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010077,3.10e-11,4;UBERON:0005389,3.10e-11,4;UBERON:0000484,3.10e-11,4;UBERON:0002546,3.10e-11,4;UBERON:0000965,3.10e-11,4;UBERON:0001803,3.10e-11,4;UBERON:0003073,3.10e-11,4;UBERON:0005426,3.10e-11,4;UBERON:0002046,2.74e-09,5;UBERON:0004117,2.74e-09,5;UBERON:0007689,2.74e-09,5;UBERON:0007123,2.74e-09,5;UBERON:0003091,2.74e-09,5;UBERON:0001871,6.04e-07,6 | |||
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| ||
|short_description=p34@RIN2 | |||
}} | }} |
Latest revision as of 16:02, 24 September 2015
Short description: | p34@RIN2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_34_at_RIN2_5end |
Coexpression cluster: | NA |
Association with transcript: | -214bp_to_ENST00000255006, NM_001242581_5end |
EntrezGene: | RIN2 |
HGNC: | 18750 |
UniProt: | Q8WYP3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
crystallin accumulating cell | 3.10e-11 | 4 |
vertebrate lens cell | 3.10e-11 | 4 |
lens epithelial cell | 3.10e-11 | 4 |
epithelial cell of uterus | 5.54e-08 | 6 |
stromal cell of endometrium | 5.54e-08 | 6 |
lymphangioblast | 7.25e-08 | 6 |
endothelial cell of lymphatic vessel | 7.25e-08 | 6 |
vascular lymphangioblast | 7.25e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
cuboidal epithelium | 3.10e-11 | 4 |
transparent eye structure | 3.10e-11 | 4 |
simple cuboidal epithelium | 3.10e-11 | 4 |
cranial placode | 3.10e-11 | 4 |
lens of camera-type eye | 3.10e-11 | 4 |
epithelium of lens | 3.10e-11 | 4 |
lens placode | 3.10e-11 | 4 |
lens vesicle | 3.10e-11 | 4 |
thyroid gland | 2.74e-09 | 5 |
pharyngeal pouch | 2.74e-09 | 5 |
thyroid diverticulum | 2.74e-09 | 5 |
pharyngeal pouch 2 | 2.74e-09 | 5 |
thyroid primordium | 2.74e-09 | 5 |
temporal lobe | 6.04e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
female reproductive endometrioid cancer | 5.54e-08 | 6 |