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FFCP PHASE1:Hg19::chr6:129204259..129204300,+: Difference between revisions

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{{FFCP
{{FFCP
|DHSsupport=supported 
|DPIdataset=robust
|EntrezGene=3908
|EntrezGene=3908
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding
|HGNC=6482
|HGNC=6482
|TSSclassifier=strong
|UniProt=F8WAH5,A6NGS5,P24043,Q59H37
|UniProt=F8WAH5,A6NGS5,P24043,Q59H37
|association_with_transcript=0bp_to_ENST00000354729,ENST00000358023,NM_000426,NM_001079823,uc003qbn.2,uc003qbo.2_5end
|association_with_transcript=0bp_to_ENST00000354729,ENST00000358023,NM_000426,NM_001079823,uc003qbn.2,uc003qbo.2_5end
|cluster_id=chr6:129204259..129204300,+
|coexpression_cluster_id=C4556
|description=CAGE_peak_1_at_LAMA2_5end
|description=CAGE_peak_1_at_LAMA2_5end
|id=chr6:129204259..129204300,+
|id=chr6:129204259..129204300,+
|ontology_enrichment_celltype=CL:0000055!3.18e-20!180;CL:0000057!2.25e-15!75;CL:0000680!1.76e-10!57;CL:0000056!1.76e-10!57;CL:0000355!1.76e-10!57;CL:0000183!2.95e-09!59;CL:0000187!3.69e-09!54;CL:0000136!1.27e-08!15;CL:0000393!3.66e-08!60;CL:0000211!3.66e-08!60;CL:0002620!1.53e-07!23
|ontology_enrichment_celltype=CL:0000055!3.18e-20!180;CL:0000057!2.25e-15!75;CL:0000680!1.76e-10!57;CL:0000056!1.76e-10!57;CL:0000355!1.76e-10!57;CL:0000183!2.95e-09!59;CL:0000187!3.69e-09!54;CL:0000136!1.27e-08!15;CL:0000393!3.66e-08!60;CL:0000211!3.66e-08!60;CL:0002620!1.53e-07!23
|ontology_enrichment_celltype_v019=CL:0000136;3.67e-08;13!CL:0002620;6.67e-08;23
|ontology_enrichment_celltype_v019_2=CL:0000057,1.86e-16,76;CL:0000680,1.78e-11,58;CL:0000056,1.78e-11,58;CL:0000355,1.78e-11,58;CL:0000187,4.63e-10,55;CL:0000136,4.88e-09,15;CL:0000393,9.36e-09,61;CL:0000211,9.36e-09,61;CL:0002620,6.79e-08,23
|ontology_enrichment_development_v019=CL:0000355;5.78e-07;58
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0007023!8.35e-26!115;UBERON:0000475!6.00e-20!365;UBERON:0000468!8.46e-14!659;UBERON:0004290!1.87e-13!70;UBERON:0002385!3.38e-13!63;UBERON:0001015!3.38e-13!63;UBERON:0000383!3.38e-13!63;UBERON:0000914!5.76e-13!83;UBERON:0002329!5.76e-13!83;UBERON:0003077!5.76e-13!83;UBERON:0003059!5.76e-13!83;UBERON:0007282!5.76e-13!83;UBERON:0009618!5.76e-13!83;UBERON:0007285!5.76e-13!83;UBERON:0000119!1.02e-12!312;UBERON:0007100!1.17e-12!27;UBERON:0001134!1.54e-12!61;UBERON:0002036!1.54e-12!61;UBERON:0003082!1.54e-12!61;UBERON:0000481!1.59e-12!347;UBERON:0000483!5.65e-12!309;UBERON:0002616!1.26e-11!59;UBERON:0000477!2.12e-11!286;UBERON:0001049!9.65e-11!57;UBERON:0005068!9.65e-11!57;UBERON:0006241!9.65e-11!57;UBERON:0007135!9.65e-11!57;UBERON:0000948!1.35e-10!24;UBERON:0005498!1.35e-10!24;UBERON:0004140!1.35e-10!24;UBERON:0009881!1.35e-10!24;UBERON:0004141!1.35e-10!24;UBERON:0003084!1.35e-10!24;UBERON:0007005!1.35e-10!24;UBERON:0004139!1.35e-10!24;UBERON:0004291!1.35e-10!24;UBERON:0003075!2.19e-10!86;UBERON:0007284!2.19e-10!86;UBERON:0000486!2.65e-10!82;UBERON:0005743!4.93e-10!86;UBERON:0004111!5.16e-10!241;UBERON:0001017!7.36e-10!82;UBERON:0000955!1.43e-09!69;UBERON:0006238!1.43e-09!69;UBERON:0000467!1.53e-09!625;UBERON:0002346!2.10e-09!90;UBERON:0000480!2.27e-09!626;UBERON:0000073!1.02e-08!94;UBERON:0001016!1.02e-08!94;UBERON:0000479!1.06e-08!787;UBERON:0000025!1.09e-08!194;UBERON:0000153!5.33e-08!129;UBERON:0007811!5.33e-08!129;UBERON:0005256!7.53e-08!143;UBERON:0000033!9.29e-08!123;UBERON:0004872!1.40e-07!84;UBERON:0003080!2.59e-07!42;UBERON:0000062!4.19e-07!511;UBERON:0002100!5.04e-07!216;UBERON:0003103!5.05e-07!69;UBERON:0001013!7.84e-07!14;UBERON:0002780!7.88e-07!41;UBERON:0001890!7.88e-07!41;UBERON:0006240!7.88e-07!41
|ontology_enrichment_uberon_v019=UBERON:0007100;5.39e-13;25!UBERON:0000948;8.56e-11;22!UBERON:0002385;4.73e-09;31!UBERON:0001015;4.73e-09;31!UBERON:0000383;4.73e-09;31!UBERON:0001134;1.03e-08;16!UBERON:0002036;1.03e-08;16!UBERON:0007023;6.71e-08;114!UBERON:0001013;3.85e-07;14
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|short_description=p1@LAMA2
|short_description=p1@LAMA2
}}
}}

Latest revision as of 16:04, 24 September 2015

Short description:p1@LAMA2
Species:Human (Homo sapiens)
DPI dataset: Robust
TSS-like-by-RIKEN-classifier(Yes/No): Yes
DHS support(Yes/No): Yes
Description: CAGE_peak_1_at_LAMA2_5end
Coexpression cluster:C4556_Cardiac_heart_Adipocyte_Smooth_left_Fibroblast_skeletal
Association with transcript: 0bp_to_ENST00000354729, ENST00000358023, NM_000426, NM_001079823, uc003qbn.2, uc003qbo.2_5end
EntrezGene:LAMA2
HGNC: 6482
UniProt: F8WAH5A6NGS5P24043Q59H37
Genome view:ZENBU


View on UCSC genome browser


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CAGE Expression




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  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data