FFCP PHASE1:Hg19::chr1:209605563..209605577,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=406988,642587 | |EntrezGene=406988,642587 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=31583,43562 | |HGNC=31583,43562 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=85bp_to_NR_029622,uc010psk.1_5end | |association_with_transcript=85bp_to_NR_029622,uc010psk.1_5end | ||
|cluster_id=chr1:209605563..209605577,+ | |||
|coexpression_cluster_id=C1158 | |coexpression_cluster_id=C1158 | ||
|description=CAGE_peak_1_at_MIR205_5end,CAGE_peak_2_at_MIR205HG_5end | |description=CAGE_peak_1_at_MIR205_5end,CAGE_peak_2_at_MIR205HG_5end | ||
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|ontology_enrichment_celltype=CL:0002076!7.34e-28!43;CL:0000066!4.87e-21!254;CL:0000223!1.30e-20!59;CL:0002251!4.81e-16!21;CL:0002368!3.53e-13!13;CL:0002159!9.56e-10!13;CL:0000622!1.74e-09!5;CL:0000154!8.74e-08!6;CL:0002202!2.00e-07!9;CL:0002632!2.00e-07!9;CL:0002322!2.36e-07!5;CL:0000039!3.18e-07!7;CL:0000586!3.18e-07!7;CL:0000244!4.98e-07!4;CL:0000731!4.98e-07!4;CL:0000076!6.09e-07!62;CL:0002077!8.39e-07!33 | |ontology_enrichment_celltype=CL:0002076!7.34e-28!43;CL:0000066!4.87e-21!254;CL:0000223!1.30e-20!59;CL:0002251!4.81e-16!21;CL:0002368!3.53e-13!13;CL:0002159!9.56e-10!13;CL:0000622!1.74e-09!5;CL:0000154!8.74e-08!6;CL:0002202!2.00e-07!9;CL:0002632!2.00e-07!9;CL:0002322!2.36e-07!5;CL:0000039!3.18e-07!7;CL:0000586!3.18e-07!7;CL:0000244!4.98e-07!4;CL:0000731!4.98e-07!4;CL:0000076!6.09e-07!62;CL:0002077!8.39e-07!33 | ||
|ontology_enrichment_celltype_v019=CL:0002076;8.34e-24;42!CL:0002251;5.67e-22;20!CL:0002159;1.87e-14;14!CL:0000622;1.88e-14;5!CL:0000154;5.67e-12;6!CL:0000244;1.78e-10;4!CL:0000731;1.78e-10;4!CL:0002621;5.85e-10;3!CL:0002623;1.97e-09;3!CL:0002368;2.09e-09;13!CL:0000150;7.80e-08;9!CL:0002077;7.85e-08;34!CL:0000362;3.11e-07;9!CL:0000240;4.05e-07;6!CL:0000311;4.05e-07;6!CL:0000079;4.05e-07;6!CL:0000237;4.05e-07;6!CL:0000575;6.75e-07;2 | |ontology_enrichment_celltype_v019=CL:0002076;8.34e-24;42!CL:0002251;5.67e-22;20!CL:0002159;1.87e-14;14!CL:0000622;1.88e-14;5!CL:0000154;5.67e-12;6!CL:0000244;1.78e-10;4!CL:0000731;1.78e-10;4!CL:0002621;5.85e-10;3!CL:0002623;1.97e-09;3!CL:0002368;2.09e-09;13!CL:0000150;7.80e-08;9!CL:0002077;7.85e-08;34!CL:0000362;3.11e-07;9!CL:0000240;4.05e-07;6!CL:0000311;4.05e-07;6!CL:0000079;4.05e-07;6!CL:0000237;4.05e-07;6!CL:0000575;6.75e-07;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.00e-29,42;CL:0002251,5.89e-22,20;CL:0000223,8.31e-22,58;CL:0000066,8.66e-22,253;CL:0002159,1.82e-14,14;CL:0000622,2.05e-14,5;CL:0000076,1.81e-12,63;CL:0000154,6.08e-12,6;CL:0000244,1.92e-10,4;CL:0000731,1.92e-10,4;CL:0002621,5.94e-10,3;CL:0002623,1.97e-09,3;CL:0002368,2.03e-09,13;CL:0002077,8.26e-09,34;CL:0000150,8.15e-08,9;CL:0000362,3.11e-07,9;CL:0000240,3.92e-07,6;CL:0000311,3.92e-07,6;CL:0000079,3.92e-07,6;CL:0000237,3.92e-07,6;CL:0000036,3.92e-07,6;CL:0000357,3.92e-07,6;CL:0000114,3.92e-07,6;CL:0000575,6.65e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000223;5.52e-11;58!CL:0000357;4.05e-07;6!CL:0000114;4.05e-07;6 | |ontology_enrichment_development_v019=CL:0000223;5.52e-11;58!CL:0000357;4.05e-07;6!CL:0000114;4.05e-07;6 | ||
|ontology_enrichment_disease=DOID:1749!2.47e-19!14;DOID:305!3.20e-08!106 | |ontology_enrichment_disease=DOID:1749!2.47e-19!14;DOID:305!3.20e-08!106 | ||
|ontology_enrichment_disease_v019=DOID:1749;7.35e-27;14 | |ontology_enrichment_disease_v019=DOID:1749;7.35e-27;14 | ||
|ontology_enrichment_disease_v019_2=DOID:1749,9.19e-27,14 | |||
|ontology_enrichment_uberon=UBERON:0000161!1.08e-17!35;UBERON:0001004!1.03e-15!72;UBERON:0000166!1.21e-15!21;UBERON:0004119!1.91e-13!169;UBERON:0000925!1.91e-13!169;UBERON:0006595!1.91e-13!169;UBERON:0000165!2.77e-12!28;UBERON:0000930!2.77e-12!28;UBERON:0000344!4.86e-12!12;UBERON:0003101!1.08e-10!22;UBERON:0000079!1.08e-10!22;UBERON:0003135!3.88e-10!11;UBERON:0003729!2.18e-09!5;UBERON:0003102!2.19e-09!95;UBERON:0000464!3.09e-09!104;UBERON:0001007!5.59e-09!155;UBERON:0001555!5.59e-09!155;UBERON:0007026!5.59e-09!155;UBERON:0000065!1.77e-08!53;UBERON:0000365!1.98e-08!5;UBERON:0003343!6.16e-08!4;UBERON:0004785!6.16e-08!4;UBERON:0005153!8.22e-08!37;UBERON:0005156!9.21e-08!59;UBERON:0000990!9.21e-08!59;UBERON:0001044!2.53e-07!6;UBERON:0003293!2.53e-07!6;UBERON:0003294!2.53e-07!6;UBERON:0010047!2.53e-07!6;UBERON:0000167!2.53e-07!6;UBERON:0001444!2.82e-07!48;UBERON:0007196!3.19e-07!14;UBERON:0001558!3.19e-07!14;UBERON:0005910!6.29e-07!6;UBERON:0004921!6.75e-07!129;UBERON:0004185!6.75e-07!129;UBERON:0000077!7.01e-07!130 | |ontology_enrichment_uberon=UBERON:0000161!1.08e-17!35;UBERON:0001004!1.03e-15!72;UBERON:0000166!1.21e-15!21;UBERON:0004119!1.91e-13!169;UBERON:0000925!1.91e-13!169;UBERON:0006595!1.91e-13!169;UBERON:0000165!2.77e-12!28;UBERON:0000930!2.77e-12!28;UBERON:0000344!4.86e-12!12;UBERON:0003101!1.08e-10!22;UBERON:0000079!1.08e-10!22;UBERON:0003135!3.88e-10!11;UBERON:0003729!2.18e-09!5;UBERON:0003102!2.19e-09!95;UBERON:0000464!3.09e-09!104;UBERON:0001007!5.59e-09!155;UBERON:0001555!5.59e-09!155;UBERON:0007026!5.59e-09!155;UBERON:0000065!1.77e-08!53;UBERON:0000365!1.98e-08!5;UBERON:0003343!6.16e-08!4;UBERON:0004785!6.16e-08!4;UBERON:0005153!8.22e-08!37;UBERON:0005156!9.21e-08!59;UBERON:0000990!9.21e-08!59;UBERON:0001044!2.53e-07!6;UBERON:0003293!2.53e-07!6;UBERON:0003294!2.53e-07!6;UBERON:0010047!2.53e-07!6;UBERON:0000167!2.53e-07!6;UBERON:0001444!2.82e-07!48;UBERON:0007196!3.19e-07!14;UBERON:0001558!3.19e-07!14;UBERON:0005910!6.29e-07!6;UBERON:0004921!6.75e-07!129;UBERON:0004185!6.75e-07!129;UBERON:0000077!7.01e-07!130 | ||
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|ontology_enrichment_uberon_v019_2=UBERON:0000166,2.81e-16,22;UBERON:0000161,3.74e-14,36;UBERON:0000165,1.00e-13,29;UBERON:0000930,1.00e-13,29;UBERON:0003102,2.05e-13,99;UBERON:0003729,3.18e-13,13;UBERON:0000365,1.04e-12,5;UBERON:0003343,6.57e-12,4;UBERON:0004785,6.57e-12,4;UBERON:0000153,1.67e-11,62;UBERON:0007811,1.67e-11,62;UBERON:0001004,3.18e-11,74;UBERON:0005910,1.54e-10,6;UBERON:0000033,1.77e-10,56;UBERON:0000344,4.47e-10,20;UBERON:0004119,5.84e-10,160;UBERON:0000925,5.84e-10,160;UBERON:0006595,5.84e-10,160;UBERON:0001949,5.94e-10,3;UBERON:0001444,1.64e-09,49;UBERON:0000974,2.35e-09,10;UBERON:0006947,2.27e-08,3;UBERON:0004054,2.27e-08,3;UBERON:0003135,6.59e-08,11;UBERON:0001044,1.02e-07,6;UBERON:0003293,1.02e-07,6;UBERON:0003294,1.02e-07,6;UBERON:0010047,1.02e-07,6;UBERON:0000167,1.02e-07,6 | |||
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| ||
|short_description=p1@MIR205,p2@MIR205HG | |short_description=p1@MIR205,p2@MIR205HG | ||
}} | }} |
Latest revision as of 19:00, 24 September 2015
Short description: | p1@MIR205, p2@MIR205HG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MIR205_5end, CAGE_peak_2_at_MIR205HG_5end |
Coexpression cluster: | C1158_Small_malignant_Gingival_Keratinocyte_cervical_Mallassezderived_oral |
Association with transcript: | 85bp_to_NR_029622, uc010psk.1_5end |
EntrezGene: | 406988,642587 |
HGNC: | 43562&submit=Submit 31583, 43562 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.00e-29 | 42 |
epithelial cell of alimentary canal | 5.89e-22 | 20 |
endodermal cell | 8.31e-22 | 58 |
epithelial cell | 8.66e-22 | 253 |
general ecto-epithelial cell | 1.82e-14 | 14 |
acinar cell | 2.05e-14 | 5 |
squamous epithelial cell | 1.81e-12 | 63 |
protein secreting cell | 6.08e-12 | 6 |
transitional epithelial cell | 1.92e-10 | 4 |
urothelial cell | 1.92e-10 | 4 |
gingival epithelial cell | 5.94e-10 | 3 |
acinar cell of salivary gland | 1.97e-09 | 3 |
respiratory epithelial cell | 2.03e-09 | 13 |
ecto-epithelial cell | 8.26e-09 | 34 |
glandular epithelial cell | 8.15e-08 | 9 |
epidermal cell | 3.11e-07 | 9 |
stratified squamous epithelial cell | 3.92e-07 | 6 |
keratin accumulating cell | 3.92e-07 | 6 |
stratified epithelial cell | 3.92e-07 | 6 |
keratinizing barrier epithelial cell | 3.92e-07 | 6 |
epithelial fate stem cell | 3.92e-07 | 6 |
stratified epithelial stem cell | 3.92e-07 | 6 |
surface ectodermal cell | 3.92e-07 | 6 |
corneal epithelial cell | 6.65e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
oral opening | 2.81e-16 | 22 |
orifice | 3.74e-14 | 36 |
mouth | 1.00e-13 | 29 |
stomodeum | 1.00e-13 | 29 |
surface structure | 2.05e-13 | 99 |
mouth mucosa | 3.18e-13 | 13 |
urothelium | 1.04e-12 | 5 |
mucosa of oral region | 6.57e-12 | 4 |
respiratory system mucosa | 6.57e-12 | 4 |
anterior region of body | 1.67e-11 | 62 |
craniocervical region | 1.67e-11 | 62 |
respiratory system | 3.18e-11 | 74 |
transitional epithelium | 1.54e-10 | 6 |
head | 1.77e-10 | 56 |
mucosa | 4.47e-10 | 20 |
endoderm-derived structure | 5.84e-10 | 160 |
endoderm | 5.84e-10 | 160 |
presumptive endoderm | 5.84e-10 | 160 |
gingival epithelium | 5.94e-10 | 3 |
subdivision of head | 1.64e-09 | 49 |
neck | 2.35e-09 | 10 |
male genital duct | 2.27e-08 | 3 |
internal male genitalia | 2.27e-08 | 3 |
male reproductive organ | 6.59e-08 | 11 |
saliva-secreting gland | 1.02e-07 | 6 |
gland of oral region | 1.02e-07 | 6 |
gland of foregut | 1.02e-07 | 6 |
oral gland | 1.02e-07 | 6 |
oral cavity | 1.02e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 9.19e-27 | 14 |