FFCP PHASE1:Hg19::chr9:124976154..124976177,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26468 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21735 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000482062_5end | |||
|cluster_id=chr9:124976154..124976177,- | |||
|description=CAGE_peak_5_at_LHX6_5end | |||
|id=chr9:124976154..124976177,- | |||
|ontology_enrichment_celltype=CL:0000066!2.22e-14!254;CL:0000223!9.44e-09!59;CL:0000039!9.03e-08!7;CL:0000586!9.03e-08!7;CL:0002322!1.66e-07!5;CL:0002076!6.00e-07!43 | |||
|ontology_enrichment_celltype_v019=CL:0000039;1.43e-13;7!CL:0000586;1.43e-13;7!CL:0002535;9.13e-09;2!CL:0002322;2.41e-07;5!CL:0000082;5.35e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,1.38e-13,7;CL:0000586,1.38e-13,7;CL:0002535,8.31e-09,2;CL:0000066,1.23e-07,253;CL:0002322,3.54e-07,5;CL:0000082,4.77e-07,19 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!3.06e-26!143;DOID:162!5.71e-26!235;DOID:14566!7.42e-25!239;DOID:305!1.33e-23!106;DOID:0050686!7.17e-10!137;DOID:4362!6.97e-08!5;DOID:3905!9.51e-08!9;DOID:1325!1.24e-07!7;DOID:3904!1.24e-07!7;DOID:1749!2.78e-07!14;DOID:1036!7.28e-07!8 | |||
|ontology_enrichment_disease_v019=DOID:4362;5.00e-13;5!DOID:1036;6.85e-12;8!DOID:0050615;2.29e-11;16!DOID:3905;6.31e-11;9!DOID:1325;1.42e-09;7!DOID:3904;1.42e-09;7!DOID:1749;1.58e-09;14!DOID:1324;4.66e-09;15!DOID:1909;3.91e-08;2!DOID:3908;1.15e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:162,8.80e-18,235;DOID:14566,3.23e-17,239;DOID:0050687,1.91e-16,143;DOID:305,2.98e-16,106;DOID:4362,4.65e-13,5;DOID:0050686,2.39e-12,137;DOID:1036,4.43e-12,8;DOID:0050615,1.88e-11,16;DOID:3905,4.93e-11,9;DOID:1749,1.23e-09,14;DOID:1325,1.47e-09,7;DOID:3904,1.47e-09,7;DOID:1324,4.02e-09,15;DOID:3908,8.51e-08,5;DOID:1909,8.74e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0000002!1.99e-08!6;UBERON:0001560!1.99e-08!6;UBERON:0005153!7.92e-07!37 | |||
|ontology_enrichment_uberon_v019=UBERON:0000002;7.33e-11;6!UBERON:0001560;7.33e-11;6!UBERON:0006955;9.13e-09;2!UBERON:0004801;9.13e-09;2!UBERON:0000473;7.92e-08;8!UBERON:0004802;5.35e-07;19!UBERON:0000115;5.35e-07;19!UBERON:0000922;9.71e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000002,6.90e-11,6;UBERON:0001560,6.90e-11,6;UBERON:0006955,8.31e-09,2;UBERON:0004801,8.31e-09,2;UBERON:0000473,7.87e-08,8;UBERON:0004802,4.77e-07,19;UBERON:0000115,4.77e-07,19;UBERON:0005153,6.56e-07,37 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.19552671033272,0.795178609928912,0.464775771478074,1.14027160516907,2.01856680700503,0,0,0,0,0,0,0.118306800039844,0.168584690078102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860919069801795,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0.179117045405697,1.16253575405585,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.10922128611516,0.200506470303285,0.276242966807689,0,0,0,0.451199612907412,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0,1.73981983154852,0.742585499285292,0,0,0,0,0,0,0,0,0,0,0,0.826424576804891,1.15314040419064,0.510450849978337,0.910420027699949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,0,0,1.68471475667626,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0.962479855263359,1.47024129588619,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0.201799707191048,0,0,0,0,0,0.19538809540204,0,1.23087398947712,0,0,1.4098700508785,0,0,0.121360521749513,0,0,0,0,0,0,0.140669416410513,0,0,0.211125408127993,0,0,1.51159648712566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.7207251734065,6.86484855790469,6.14607972596635,2.06846023944879,0.874813840149763,0,0,0,0,0,0,0,3.48603083260768,0.139423744278603,0.0769502585037971,0,0,2.51321404347362,0.434589487688032,0,0,0,0,0.784901281975124,0.166211681900156,4.73750887296079,3.33306308340157,4.6990044353236,1.89753732724185,0,0.421996129056054,0.163232808159148,2.54435528581093,0,0,0,0,0,0,0,0.067401132980677,0,0,0,1.17398771359254,0,0,0,0.30607276163049,0,0.300646838828985,0.103688191397247,0.664653872707185,2.64793564700399,2.19753042885058,7.16834578637753,0.853828638089378,0,0,0.391969589657511,7.74826938565583,0,0,0,0,0.0821154570532092,0,0,0,0.137041924646751,0,0.443175571691151,0.391102765469606,0,0,5.39485945871752,0.432271251462318,0,0,0,0.124252535565433,0.471388069233591,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0.798716001995964,0,0,0.0671834724867263,0,2.32991899054908,0.630265458457789,0.247247575143499,0.471824806979294,0.196854963029498,0,0,0.136203406111576,0.482259445395058,0.687697182986169,0,0,0,0,0.335434687599266,0,0,1.90080605734932,0,6.52511670886114,0,0,0.25426853765475,0,0,0,0,1.72394293573612,0,0.79318464064088,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,3.92635240625586,0,0.366078794705889,0,0,0,0,0.415045904808692,0,1.06154382279153,1.14186133417987,0.235265819698172,0,1.59413131471908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54095864325843,0.428883182749851,1.56596575179127,0,0,0.489473409012935,0,0,0,0,0,0,0,0,0.303859956177382,0.138258436151731,0,0,0,0.327609848846413,0,0,0,0.320075189082423,0,0,0,0.139879507719444,0,0,1.72519698234691,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0.256916900385838,0,0,0,1.51243017733031,0.138314504928436,0.161475645631851,0,0,1.76954585021611,0,0,0,0.690359926060101,0.198916222116275,0,0,0,0.785720083444267,0.163771917510097,1.18284868973636,0.0675375846183947,0,0.206686796501184,0,0.546974809018219,0,0,0,0.511049710558381,0,0,0,0,0,0,0,0,0.131545547125698,0.472775363535873,1.11231401892069,0,0.157115589916002,0,0,0,0,0,0,0.813689977576877,0.521574816907738,0,0,0,0,0,0,0,0,0.9164274741762,0,0,0.335566295393377,0,0,0,0,0,0,7.48606283078738,1.19370465096821,0.118920090777569,6.66381884029864,0.879524133963433,3.32118255846682,0,0,0,0,0.707029641304878,0,0,0,0,0,0,0,2.85686301769052,0,0,0,0,0,0.473314686579554,0.339957450954573,1.30905207102113,0,0,0,0,0.252332849670158,0.546327859818478,0,1.32585478664576,2.13773924212448,2.75684698604535,3.50990555009325,0.378893491091197,0.535928260312357,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320182037633146,0,0,0,0,0,0,0,0 | |||
|short_description=p5@LHX6 | |||
}} |
Latest revision as of 22:06, 24 September 2015
Short description: | p5@LHX6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_LHX6_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000482062_5end |
EntrezGene: | LHX6 |
HGNC: | 21735 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 1.38e-13 | 7 |
germ cell | 1.38e-13 | 7 |
epithelial cell of cervix | 8.31e-09 | 2 |
epithelial cell | 1.23e-07 | 253 |
embryonic stem cell | 3.54e-07 | 5 |
epithelial cell of lung | 4.77e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
uterine cervix | 6.90e-11 | 6 |
neck of organ | 6.90e-11 | 6 |
uterine epithelium | 8.31e-09 | 2 |
cervix epithelium | 8.31e-09 | 2 |
testis | 7.87e-08 | 8 |
respiratory tract epithelium | 4.77e-07 | 19 |
lung epithelium | 4.77e-07 | 19 |
epithelial bud | 6.56e-07 | 37 |
Ontology term | p-value | n |
---|---|---|
cancer | 8.80e-18 | 235 |
disease of cellular proliferation | 3.23e-17 | 239 |
cell type cancer | 1.91e-16 | 143 |
carcinoma | 2.98e-16 | 106 |
cervical cancer | 4.65e-13 | 5 |
organ system cancer | 2.39e-12 | 137 |
chronic leukemia | 4.43e-12 | 8 |
respiratory system cancer | 1.88e-11 | 16 |
lung carcinoma | 4.93e-11 | 9 |
squamous cell carcinoma | 1.23e-09 | 14 |
bronchus cancer | 1.47e-09 | 7 |
bronchogenic carcinoma | 1.47e-09 | 7 |
lung cancer | 4.02e-09 | 15 |
non-small cell lung carcinoma | 8.51e-08 | 5 |
melanoma | 8.74e-08 | 2 |