FFCP PHASE1:Hg19::chr16:19429024..19429065,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79838 | |EntrezGene=79838 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22999 | |HGNC=22999 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=6bp_to_ENST00000542583,uc010var.1_5end | |association_with_transcript=6bp_to_ENST00000542583,uc010var.1_5end | ||
|cluster_id=chr16:19429024..19429065,+ | |||
|coexpression_cluster_id=C81 | |||
|description=CAGE_peak_2_at_TMC5_5end | |description=CAGE_peak_2_at_TMC5_5end | ||
|id=chr16:19429024..19429065,+ | |id=chr16:19429024..19429065,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000167;2.67e-07;1!CL:0000164;2.67e-07;1!CL:0000502;2.67e-07;1!CL:0000172;2.67e-07;1!CL:0000173;2.67e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000167,2.84e-07,1;CL:0000164,2.84e-07,1;CL:0000502,2.84e-07,1;CL:0000172,2.84e-07,1;CL:0000173,2.84e-07,1;CL:0002351,2.84e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0006595;7.04e-08;86!CL:0002351;2.67e-07;1!UBERON:0006242;2.67e-07;1 | |||
|ontology_enrichment_disease=DOID:3493!2.24e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:3493;2.66e-13;2!DOID:299;6.07e-08;25!DOID:4430;2.67e-07;1!DOID:3111;3.40e-07;1!DOID:3603;3.40e-07;1!DOID:0050619;8.67e-07;1!DOID:1357;8.67e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,2.58e-13,2;DOID:299,6.27e-08,25;DOID:4430,2.84e-07,1;DOID:3111,3.60e-07,1;DOID:3603,3.60e-07,1;DOID:0050619,7.29e-07,1;DOID:1357,7.29e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.28e-12!115;UBERON:0003135!3.21e-11!11;UBERON:0004921!2.35e-10!129;UBERON:0004185!2.35e-10!129;UBERON:0004119!5.74e-10!169;UBERON:0000925!5.74e-10!169;UBERON:0006595!5.74e-10!169;UBERON:0003101!2.71e-08!22;UBERON:0000079!2.71e-08!22;UBERON:0001007!2.85e-08!155;UBERON:0001555!2.85e-08!155;UBERON:0007026!2.85e-08!155;UBERON:0005409!1.75e-07!35;UBERON:0000341!3.11e-07!2;UBERON:0003127!3.50e-07!2;UBERON:0000077!8.46e-07!130;UBERON:0002394!8.69e-07!4;UBERON:0003928!8.69e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;1.17e-19;33!UBERON:0002108;4.97e-19;4!UBERON:0005409;5.58e-19;22!UBERON:0000160;6.88e-15;17!UBERON:0000341;4.98e-13;2!UBERON:0003127;6.51e-13;2!UBERON:0006562;6.40e-12;2!UBERON:0002114;9.63e-09;2!UBERON:0002294;5.64e-08;7!UBERON:0001173;5.64e-08;7!UBERON:0001555;1.92e-07;54!UBERON:0001301;1.98e-07;1!UBERON:0004913;4.18e-07;1!UBERON:0003703;4.18e-07;1!UBERON:0001174;4.18e-07;1!UBERON:0004914;4.18e-07;1!UBERON:0002372;8.67e-07;1!UBERON:0002171;8.67e-07;1!UBERON:0001764;8.67e-07;1!UBERON:0001961;8.67e-07;1!UBERON:0001825;8.67e-07;1!UBERON:0001744;8.67e-07;1!UBERON:0006518;8.67e-07;1!UBERON:0008949;8.67e-07;1!UBERON:0000101;8.67e-07;1!UBERON:0001042;8.67e-07;1!UBERON:0002167;8.67e-07;1!UBERON:0001735;8.67e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002108,5.33e-19,4;UBERON:0005409,1.28e-16,25;UBERON:0000160,7.04e-15,17;UBERON:0004921,2.97e-13,118;UBERON:0000341,4.98e-13,2;UBERON:0003127,6.32e-13,2;UBERON:0001007,2.09e-11,145;UBERON:0001555,2.09e-11,145;UBERON:0007026,2.09e-11,145;UBERON:0004119,5.89e-10,160;UBERON:0000925,5.89e-10,160;UBERON:0006595,5.89e-10,160;UBERON:0002114,9.82e-09,2;UBERON:0001301,1.98e-07,1;UBERON:0004913,4.31e-07,1;UBERON:0003703,4.31e-07,1;UBERON:0001174,4.31e-07,1;UBERON:0004914,4.31e-07,1;UBERON:0001764,7.29e-07,1;UBERON:0001825,7.29e-07,1 | |||
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| ||
|short_description=p2@TMC5 | |short_description=p2@TMC5 | ||
}} | }} |
Latest revision as of 23:47, 24 September 2015
Short description: | p2@TMC5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TMC5_5end |
Coexpression cluster: | C81_trachea_salivary_throat_aorta_eye_submaxillary_parotid |
Association with transcript: | 6bp_to_ENST00000542583, uc010var.1_5end |
EntrezGene: | TMC5 |
HGNC: | 22999 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
peptide hormone secreting cell | 2.84e-07 | 1 |
enteroendocrine cell | 2.84e-07 | 1 |
type D enteroendocrine cell | 2.84e-07 | 1 |
somatostatin secreting cell | 2.84e-07 | 1 |
pancreatic D cell | 2.84e-07 | 1 |
progenitor cell of endocrine pancreas | 2.84e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
small intestine | 5.33e-19 | 4 |
gastrointestinal system | 1.28e-16 | 25 |
intestine | 7.04e-15 | 17 |
subdivision of digestive tract | 2.97e-13 | 118 |
throat | 4.98e-13 | 2 |
open tracheal system trachea | 6.32e-13 | 2 |
digestive system | 2.09e-11 | 145 |
digestive tract | 2.09e-11 | 145 |
primitive gut | 2.09e-11 | 145 |
endoderm-derived structure | 5.89e-10 | 160 |
endoderm | 5.89e-10 | 160 |
presumptive endoderm | 5.89e-10 | 160 |
duodenum | 9.82e-09 | 2 |
epididymis | 1.98e-07 | 1 |
hepatopancreatic ampulla | 4.31e-07 | 1 |
extrahepatic bile duct | 4.31e-07 | 1 |
common bile duct | 4.31e-07 | 1 |
duodenal papilla | 4.31e-07 | 1 |
maxillary sinus | 7.29e-07 | 1 |
paranasal sinus | 7.29e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 2.58e-13 | 2 |
adenocarcinoma | 6.27e-08 | 25 |
somatostatinoma | 2.84e-07 | 1 |
cystadenocarcinoma | 3.60e-07 | 1 |
mucinous cystadenocarcinoma | 3.60e-07 | 1 |
paranasal sinus cancer | 7.29e-07 | 1 |
maxillary sinus cancer | 7.29e-07 | 1 |