FFCP PHASE1:Hg19::chr3:137729026..137729037,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51208 | |EntrezGene=51208 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2039 | |HGNC=2039 | ||
|TSSclassifier=strong | |||
|UniProt=F8WEY4,P56856 | |UniProt=F8WEY4,P56856 | ||
|association_with_transcript=-20bp_to_,20bp_to_ENST00000479660,NM_016369,uc003erp.1,uc010hue.1_5end | |association_with_transcript=-20bp_to_,20bp_to_ENST00000479660,NM_016369,uc003erp.1,uc010hue.1_5end | ||
|cluster_id=chr3:137729026..137729037,+ | |||
|coexpression_cluster_id=C131 | |coexpression_cluster_id=C131 | ||
|description=CAGE_peak_3_at_CLDN18_5end | |description=CAGE_peak_3_at_CLDN18_5end | ||
|id=chr3:137729026..137729037,+ | |id=chr3:137729026..137729037,+ | ||
|ontology_enrichment_celltype=CL:0002322!3.93e-10!5 | |ontology_enrichment_celltype=CL:0002322!3.93e-10!5 | ||
|ontology_enrichment_celltype_v019=CL:0002563;1.86e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,1.92e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.85e-08;29!UBERON:0001041;3.38e-08;30 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002171!2.06e-13!1;UBERON:0006518!2.06e-13!1;UBERON:0008949!2.06e-13!1;UBERON:0000101!2.06e-13!1;UBERON:0002167!2.06e-13!1;UBERON:0002135!4.77e-13!1;UBERON:0002048!6.35e-09!22;UBERON:0000117!6.35e-09!22;UBERON:0000171!6.35e-09!22;UBERON:0000170!6.35e-09!22;UBERON:0005597!6.35e-09!22;UBERON:0000118!6.35e-09!22;UBERON:0002133!3.70e-07!2 | |ontology_enrichment_uberon=UBERON:0002171!2.06e-13!1;UBERON:0006518!2.06e-13!1;UBERON:0008949!2.06e-13!1;UBERON:0000101!2.06e-13!1;UBERON:0002167!2.06e-13!1;UBERON:0002135!4.77e-13!1;UBERON:0002048!6.35e-09!22;UBERON:0000117!6.35e-09!22;UBERON:0000171!6.35e-09!22;UBERON:0000170!6.35e-09!22;UBERON:0005597!6.35e-09!22;UBERON:0000118!6.35e-09!22;UBERON:0002133!3.70e-07!2 | ||
|ontology_enrichment_uberon_v019=UBERON:0002171;3.58e-26;1!UBERON:0006518;3.58e-26;1!UBERON:0008949;3.58e-26;1!UBERON:0000101;3.58e-26;1!UBERON:0002167;3.58e-26;1!UBERON:0002048;6.05e-11;22!UBERON:0000117;6.05e-11;22!UBERON:0000171;6.05e-11;22!UBERON:0000170;6.05e-11;22!UBERON:0001242;1.86e-07;4!UBERON:0001262;1.86e-07;4!UBERON:0004786;1.86e-07;4!UBERON:0004808;1.86e-07;4!UBERON:0001277;1.86e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002171,3.58e-26,1;UBERON:0006518,3.58e-26,1;UBERON:0008949,3.58e-26,1;UBERON:0000101,3.58e-26,1;UBERON:0002167,3.58e-26,1;UBERON:0002048,6.05e-11,22;UBERON:0000117,6.05e-11,22;UBERON:0000171,6.05e-11,22;UBERON:0000170,6.05e-11,22;UBERON:0005597,6.05e-11,22;UBERON:0000118,6.05e-11,22;UBERON:0001242,1.92e-07,4;UBERON:0001262,1.92e-07,4;UBERON:0004786,1.92e-07,4;UBERON:0004808,1.92e-07,4;UBERON:0001277,1.92e-07,4;UBERON:0005178,2.65e-07,34;UBERON:0002224,2.65e-07,34;UBERON:0005181,4.12e-07,35;UBERON:0005153,9.30e-07,37 | |||
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|short_description=p3@CLDN18 | |short_description=p3@CLDN18 | ||
}} | }} |
Latest revision as of 00:26, 25 September 2015
Short description: | p3@CLDN18 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CLDN18_5end |
Coexpression cluster: | C131_lung_trachea_Alveolar_thyroid_umbilical_throat_skin |
Association with transcript: | -20bp_to_, 20bp_to_ENST00000479660, NM_016369, uc003erp.1, uc010hue.1_5end |
EntrezGene: | CLDN18 |
HGNC: | 2039 |
UniProt: | F8WEY4P56856 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 1.92e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
lower lobe of right lung | 3.58e-26 | 1 |
right lung lobe | 3.58e-26 | 1 |
lower lobe of lung | 3.58e-26 | 1 |
lobe of lung | 3.58e-26 | 1 |
right lung | 3.58e-26 | 1 |
lung | 6.05e-11 | 22 |
respiratory tube | 6.05e-11 | 22 |
respiration organ | 6.05e-11 | 22 |
pair of lungs | 6.05e-11 | 22 |
lung primordium | 6.05e-11 | 22 |
lung bud | 6.05e-11 | 22 |
intestinal mucosa | 1.92e-07 | 4 |
wall of intestine | 1.92e-07 | 4 |
gastrointestinal system mucosa | 1.92e-07 | 4 |
gastrointestinal system epithelium | 1.92e-07 | 4 |
intestinal epithelium | 1.92e-07 | 4 |
thoracic cavity element | 2.65e-07 | 34 |
thoracic cavity | 2.65e-07 | 34 |
thoracic segment organ | 4.12e-07 | 35 |
epithelial bud | 9.30e-07 | 37 |