FFCP PHASE1:Hg19::chr6:137243060..137243064,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=340146 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15621 | |||
|TSSclassifier=strong | |||
|UniProt=Q5M8T2 | |||
|association_with_transcript=-337bp_to_ENST00000331858,NM_001008783,uc003qhe.2_5end | |||
|cluster_id=chr6:137243060..137243064,+ | |||
|description=CAGE_peak_5_at_SLC35D3_5end | |||
|id=chr6:137243060..137243064,+ | |||
|ontology_enrichment_celltype=CL:0002322!6.73e-28!5;CL:0000167!2.16e-10!1;CL:0000164!2.16e-10!1;CL:0000502!2.16e-10!1;CL:0000172!2.16e-10!1;CL:0000173!2.16e-10!1;CL:0002351!2.16e-10!1 | |||
|ontology_enrichment_celltype_v019=CL:0002535;5.04e-34;2!CL:0002586;3.27e-23;3!CL:0000149;8.69e-18;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002535,3.61e-34,2;CL:0002586,4.09e-23,3;CL:0000149,1.03e-17,4 | |||
|ontology_enrichment_development_v019=UBERON:0003056;3.27e-23;3 | |||
|ontology_enrichment_disease=DOID:4430!2.16e-10!1;DOID:3119!3.32e-10!14;DOID:4362!3.48e-08!5;DOID:169!9.69e-07!6 | |||
|ontology_enrichment_disease_v019=DOID:4362;1.60e-14;5 | |||
|ontology_enrichment_disease_v019_2=DOID:4362,1.40e-14,5 | |||
|ontology_enrichment_uberon=UBERON:0009663!9.79e-12!7;UBERON:0001874!2.59e-10!1;UBERON:0001882!1.07e-09!1;UBERON:0005403!1.07e-09!1;UBERON:0000369!1.34e-09!4;UBERON:0002435!1.34e-09!4;UBERON:0000204!1.34e-09!4;UBERON:0010082!1.34e-09!4;UBERON:0002308!3.04e-09!9;UBERON:0002420!3.04e-09!9;UBERON:0000125!3.04e-09!9;UBERON:0007245!3.04e-09!9;UBERON:0010009!3.04e-09!9;UBERON:0010011!3.04e-09!9;UBERON:0000454!3.04e-09!9;UBERON:0000966!3.36e-08!5;UBERON:0005388!3.36e-08!5;UBERON:0001802!3.36e-08!5;UBERON:0000002!5.92e-07!6;UBERON:0001560!5.92e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;2.86e-53;5!UBERON:0005388;2.86e-53;5!UBERON:0001802;2.86e-53;5!UBERON:0006955;5.04e-34;2!UBERON:0004801;5.04e-34;2!UBERON:0001781;3.27e-23;3!UBERON:0001782;3.27e-23;3!UBERON:0000019;5.27e-15;19!UBERON:0000047;5.27e-15;19!UBERON:0004088;5.27e-15;19!UBERON:0010230;5.27e-15;19!UBERON:0000970;2.58e-14;20!UBERON:0002104;1.09e-13;21!UBERON:0001456;1.09e-13;21!UBERON:0000020;1.33e-12;23!UBERON:0000002;2.45e-12;6!UBERON:0001560;2.45e-12;6!UBERON:0001032;3.97e-12;24!UBERON:0004456;3.97e-12;24!UBERON:0007625;2.47e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,1.52e-44,6;UBERON:0005388,1.52e-44,6;UBERON:0001802,1.52e-44,6;UBERON:0006955,3.61e-34,2;UBERON:0004801,3.61e-34,2;UBERON:0001782,4.09e-23,3;UBERON:0005424,4.09e-23,3;UBERON:0001781,1.03e-17,4;UBERON:0000019,2.76e-14,20;UBERON:0000047,2.76e-14,20;UBERON:0010312,2.76e-14,20;UBERON:0004088,2.76e-14,20;UBERON:0010230,2.76e-14,20;UBERON:0003072,2.76e-14,20;UBERON:0004128,2.76e-14,20;UBERON:0003071,2.76e-14,20;UBERON:0000970,1.16e-13,21;UBERON:0002104,1.16e-13,21;UBERON:0001456,4.26e-13,22;UBERON:0000002,2.19e-12,6;UBERON:0001560,2.19e-12,6;UBERON:0000020,4.20e-12,24;UBERON:0001032,4.20e-12,24;UBERON:0004456,4.20e-12,24;UBERON:0005085,1.25e-09,31;UBERON:0007625,2.63e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.132529768321485,0.232387885739037,0.414644220061482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02580050046556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.25966373927138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282706142867882,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451961481561065,0,0,0,0,0,0,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.628462359664008,0,0,0,0,1.07214816264985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.701818390386317,0.397901550322736,0,0,0,0,0.0771741581079447,0,0,0,0.707029641304878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p5@SLC35D3 | |||
}} |
Latest revision as of 01:29, 25 September 2015
Short description: | p5@SLC35D3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SLC35D3_5end |
Coexpression cluster: | NA |
Association with transcript: | -337bp_to_ENST00000331858, NM_001008783, uc003qhe.2_5end |
EntrezGene: | SLC35D3 |
HGNC: | 15621 |
UniProt: | Q5M8T2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of cervix | 3.61e-34 | 2 |
retinal pigment epithelial cell | 4.09e-23 | 3 |
visual pigment cell | 1.03e-17 | 4 |
Ontology term | p-value | n |
---|---|---|
retina | 1.52e-44 | 6 |
photoreceptor array | 1.52e-44 | 6 |
posterior segment of eyeball | 1.52e-44 | 6 |
uterine epithelium | 3.61e-34 | 2 |
cervix epithelium | 3.61e-34 | 2 |
pigmented layer of retina | 4.09e-23 | 3 |
presumptive retinal pigmented epithelium | 4.09e-23 | 3 |
layer of retina | 1.03e-17 | 4 |
camera-type eye | 2.76e-14 | 20 |
simple eye | 2.76e-14 | 20 |
immature eye | 2.76e-14 | 20 |
ocular region | 2.76e-14 | 20 |
eyeball of camera-type eye | 2.76e-14 | 20 |
optic cup | 2.76e-14 | 20 |
optic vesicle | 2.76e-14 | 20 |
eye primordium | 2.76e-14 | 20 |
eye | 1.16e-13 | 21 |
visual system | 1.16e-13 | 21 |
face | 4.26e-13 | 22 |
uterine cervix | 2.19e-12 | 6 |
neck of organ | 2.19e-12 | 6 |
sense organ | 4.20e-12 | 24 |
sensory system | 4.20e-12 | 24 |
entire sense organ system | 4.20e-12 | 24 |
ectodermal placode | 1.25e-09 | 31 |
pigment epithelium of eye | 2.63e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
cervical cancer | 1.40e-14 | 5 |