FFCP PHASE1:Hg19::chr16:20911722..20911768,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57149 | |EntrezGene=57149 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25074 | |HGNC=25074 | ||
|TSSclassifier=strong | |||
|UniProt=O43325 | |UniProt=O43325 | ||
|association_with_transcript=165bp_to_ENST00000439021,NM_020424,uc010bwi.1,uc010bwj.2,uc010bwk.2_5end | |association_with_transcript=165bp_to_ENST00000439021,NM_020424,uc010bwi.1,uc010bwj.2,uc010bwk.2_5end | ||
|cluster_id=chr16:20911722..20911768,+ | |||
|description=CAGE_peak_3_at_LYRM1_5end | |description=CAGE_peak_3_at_LYRM1_5end | ||
|id=chr16:20911722..20911768,+ | |id=chr16:20911722..20911768,+ | ||
|ontology_enrichment_celltype=CL:0000738!7.91e-23!140;CL:0000542!1.22e-21!53;CL:0000051!1.22e-21!53;CL:0000838!5.68e-21!52;CL:0000037!3.89e-20!172;CL:0000566!3.89e-20!172;CL:0002087!3.75e-18!119;CL:0002032!5.57e-18!165;CL:0000837!5.57e-18!165;CL:0002031!6.70e-18!124;CL:0000988!1.73e-17!182;CL:0000945!8.64e-12!24;CL:0000826!8.64e-12!24;CL:0000134!5.40e-10!358;CL:0000084!2.06e-09!25;CL:0000827!2.06e-09!25;CL:0002320!5.71e-09!365;CL:0000791!1.77e-08!18;CL:0000789!1.77e-08!18;CL:0002420!1.77e-08!18;CL:0002419!1.77e-08!18;CL:0000790!1.77e-08!18;CL:0000236!2.25e-08!14 | |ontology_enrichment_celltype=CL:0000738!7.91e-23!140;CL:0000542!1.22e-21!53;CL:0000051!1.22e-21!53;CL:0000838!5.68e-21!52;CL:0000037!3.89e-20!172;CL:0000566!3.89e-20!172;CL:0002087!3.75e-18!119;CL:0002032!5.57e-18!165;CL:0000837!5.57e-18!165;CL:0002031!6.70e-18!124;CL:0000988!1.73e-17!182;CL:0000945!8.64e-12!24;CL:0000826!8.64e-12!24;CL:0000134!5.40e-10!358;CL:0000084!2.06e-09!25;CL:0000827!2.06e-09!25;CL:0002320!5.71e-09!365;CL:0000791!1.77e-08!18;CL:0000789!1.77e-08!18;CL:0002420!1.77e-08!18;CL:0002419!1.77e-08!18;CL:0000790!1.77e-08!18;CL:0000236!2.25e-08!14 | ||
|ontology_enrichment_celltype_v019=CL:0000542;6.28e-13;53!CL:0000945;9.71e-12;24!CL:0000084;2.47e-09;25!CL:0000791;1.86e-08;18!CL:0000789;1.86e-08;18!CL:0002419;1.86e-08;18!CL:0000236;1.05e-07;13!CL:0002087;9.67e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,4.23e-24,136;CL:0000542,1.20e-21,53;CL:0000051,1.20e-21,53;CL:0000037,3.62e-21,168;CL:0000838,5.57e-21,52;CL:0002087,2.31e-19,115;CL:0002031,4.62e-19,120;CL:0002032,5.84e-19,161;CL:0000837,5.84e-19,161;CL:0000988,9.20e-19,177;CL:0000945,8.56e-12,24;CL:0000826,8.56e-12,24;CL:0000134,1.55e-10,354;CL:0002320,1.75e-09,361;CL:0000084,2.04e-09,25;CL:0000827,2.04e-09,25;CL:0000791,1.75e-08,18;CL:0000789,1.75e-08,18;CL:0002420,1.75e-08,18;CL:0002419,1.75e-08,18;CL:0000790,1.75e-08,18;CL:0000236,2.24e-08,14 | |||
|ontology_enrichment_development_v019=CL:0000051;6.28e-13;53!CL:0000790;1.86e-08;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.28e-09!115;UBERON:0002384!4.84e-08!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.59e-09,114;UBERON:0002384,1.62e-08,371;UBERON:0002390,7.01e-07,98;UBERON:0003061,7.01e-07,98 | |||
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| ||
|short_description=p3@LYRM1 | |short_description=p3@LYRM1 | ||
}} | }} |
Latest revision as of 03:08, 25 September 2015
Short description: | p3@LYRM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LYRM1_5end |
Coexpression cluster: | NA |
Association with transcript: | 165bp_to_ENST00000439021, NM_020424, uc010bwi.1, uc010bwj.2, uc010bwk.2_5end |
EntrezGene: | LYRM1 |
HGNC: | 25074 |
UniProt: | O43325 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 4.23e-24 | 136 |
lymphocyte | 1.20e-21 | 53 |
common lymphoid progenitor | 1.20e-21 | 53 |
hematopoietic stem cell | 3.62e-21 | 168 |
lymphoid lineage restricted progenitor cell | 5.57e-21 | 52 |
nongranular leukocyte | 2.31e-19 | 115 |
hematopoietic lineage restricted progenitor cell | 4.62e-19 | 120 |
hematopoietic oligopotent progenitor cell | 5.84e-19 | 161 |
hematopoietic multipotent progenitor cell | 5.84e-19 | 161 |
hematopoietic cell | 9.20e-19 | 177 |
lymphocyte of B lineage | 8.56e-12 | 24 |
pro-B cell | 8.56e-12 | 24 |
mesenchymal cell | 1.55e-10 | 354 |
connective tissue cell | 1.75e-09 | 361 |
T cell | 2.04e-09 | 25 |
pro-T cell | 2.04e-09 | 25 |
mature alpha-beta T cell | 1.75e-08 | 18 |
alpha-beta T cell | 1.75e-08 | 18 |
immature T cell | 1.75e-08 | 18 |
mature T cell | 1.75e-08 | 18 |
immature alpha-beta T cell | 1.75e-08 | 18 |
B cell | 2.24e-08 | 14 |
Ontology term | p-value | n |
---|---|---|
adult organism | 5.59e-09 | 114 |
connective tissue | 1.62e-08 | 371 |
hematopoietic system | 7.01e-07 | 98 |
blood island | 7.01e-07 | 98 |