FFCP PHASE1:Hg19::chr17:46608354..46608385,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3211 | |EntrezGene=3211 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5111 | |HGNC=5111 | ||
|TSSclassifier=strong | |||
|UniProt=P14653 | |UniProt=P14653 | ||
|association_with_transcript=0bp_to_ENST00000239174_5end | |association_with_transcript=0bp_to_ENST00000239174_5end | ||
|cluster_id=chr17:46608354..46608385,- | |||
|coexpression_cluster_id=C128 | |coexpression_cluster_id=C128 | ||
|description=CAGE_peak_1_at_HOXB1_5end | |description=CAGE_peak_1_at_HOXB1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002322!1.62e-89!5;CL:0000039!1.09e-41!7;CL:0000586!1.09e-41!7;CL:0000148!5.55e-17!10;CL:0000541!5.55e-17!10;CL:0000540!8.27e-13!6;CL:0000031!8.27e-13!6;CL:0000404!8.27e-13!6;CL:0000147!2.53e-12!14;CL:0000047!7.59e-10!8;CL:0000710!8.30e-09!20;CL:0000133!1.89e-07!59 | |ontology_enrichment_celltype=CL:0002322!1.62e-89!5;CL:0000039!1.09e-41!7;CL:0000586!1.09e-41!7;CL:0000148!5.55e-17!10;CL:0000541!5.55e-17!10;CL:0000540!8.27e-13!6;CL:0000031!8.27e-13!6;CL:0000404!8.27e-13!6;CL:0000147!2.53e-12!14;CL:0000047!7.59e-10!8;CL:0000710!8.30e-09!20;CL:0000133!1.89e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0002322;6.81e-122;5!CL:0002321;4.69e-41;15!CL:0000039;1.15e-32;7!CL:0000586;1.15e-32;7!CL:0000148;6.19e-23;10!CL:0000147;1.30e-16;14!CL:0000710;7.54e-12;20!CL:0000075;5.98e-09;27!CL:0002077;6.12e-07;34 | |ontology_enrichment_celltype_v019=CL:0002322;6.81e-122;5!CL:0002321;4.69e-41;15!CL:0000039;1.15e-32;7!CL:0000586;1.15e-32;7!CL:0000148;6.19e-23;10!CL:0000147;1.30e-16;14!CL:0000710;7.54e-12;20!CL:0000075;5.98e-09;27!CL:0002077;6.12e-07;34 | ||
|ontology_enrichment_celltype_v019_2=CL:0002322,7.72e-122,5;CL:0000039,1.09e-32,7;CL:0000586,1.09e-32,7;CL:0000148,6.42e-23,10;CL:0000541,6.42e-23,10;CL:0000147,1.33e-16,14;CL:0000710,7.68e-12,20;CL:0000075,6.06e-09,27;CL:0002077,3.15e-07,34 | |||
|ontology_enrichment_development_v019=UBERON:0009117;3.94e-23;10!UBERON:0005564;3.94e-23;10 | |ontology_enrichment_development_v019=UBERON:0009117;3.94e-23;10!UBERON:0005564;3.94e-23;10 | ||
|ontology_enrichment_disease=DOID:3095!1.39e-13!22;DOID:2994!1.39e-13!22 | |ontology_enrichment_disease=DOID:3095!1.39e-13!22;DOID:2994!1.39e-13!22 | ||
|ontology_enrichment_disease_v019=DOID:3095;6.37e-11;22!DOID:2994;6.37e-11;22 | |ontology_enrichment_disease_v019=DOID:3095;6.37e-11;22!DOID:2994;6.37e-11;22 | ||
|ontology_enrichment_disease_v019_2=DOID:3095,6.26e-11,22;DOID:2994,6.26e-11,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!1.49e-36!8;UBERON:0003135!9.88e-27!11;UBERON:0000991!3.27e-14!21;UBERON:0009196!3.27e-14!21;UBERON:0009117!3.27e-14!21;UBERON:0005564!3.27e-14!21;UBERON:0004176!1.39e-13!22;UBERON:0003101!1.39e-13!22;UBERON:0000079!1.39e-13!22 | |ontology_enrichment_uberon=UBERON:0000473!1.49e-36!8;UBERON:0003135!9.88e-27!11;UBERON:0000991!3.27e-14!21;UBERON:0009196!3.27e-14!21;UBERON:0009117!3.27e-14!21;UBERON:0005564!3.27e-14!21;UBERON:0004176!1.39e-13!22;UBERON:0003101!1.39e-13!22;UBERON:0000079!1.39e-13!22 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;1.07e-28;8!UBERON:0003135;4.20e-21;11!UBERON:0000922;6.05e-20;49!UBERON:0000991;2.07e-11;21!UBERON:0003101;6.37e-11;22!UBERON:0000079;6.37e-11;22 | |ontology_enrichment_uberon_v019=UBERON:0000473;1.07e-28;8!UBERON:0003135;4.20e-21;11!UBERON:0000922;6.05e-20;49!UBERON:0000991;2.07e-11;21!UBERON:0003101;6.37e-11;22!UBERON:0000079;6.37e-11;22 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.02e-28,8;UBERON:0003135,4.06e-21,11;UBERON:0000991,2.03e-11,21;UBERON:0009196,2.03e-11,21;UBERON:0009117,2.03e-11,21;UBERON:0005564,2.03e-11,21;UBERON:0004176,6.26e-11,22;UBERON:0003101,6.26e-11,22;UBERON:0000079,6.26e-11,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58565817968474,1.32529768321485,4.76395165765025,9.64047811642945,2.52320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.643012593860077,0.137539436597234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.1988829741982,26.721740526556,4.96232457488162,0.250707539292375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58565817968474,1.32529768321485,4.76395165765025,9.64047811642945,2.52320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.643012593860077,0.137539436597234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.1988829741982,26.721740526556,4.96232457488162,0.250707539292375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p1@HOXB1 | |short_description=p1@HOXB1 | ||
}} | }} |
Latest revision as of 06:32, 25 September 2015
Short description: | p1@HOXB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HOXB1_5end |
Coexpression cluster: | C128_testicular_choriocarcinoma_H9_teratocarcinoma_pancreatic_iPS_HES3GFP |
Association with transcript: | 0bp_to_ENST00000239174_5end |
EntrezGene: | HOXB1 |
HGNC: | 5111 |
UniProt: | P14653 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 7.72e-122 | 5 |
germ line cell | 1.09e-32 | 7 |
germ cell | 1.09e-32 | 7 |
melanocyte | 6.42e-23 | 10 |
melanoblast | 6.42e-23 | 10 |
pigment cell | 1.33e-16 | 14 |
neurecto-epithelial cell | 7.68e-12 | 20 |
columnar/cuboidal epithelial cell | 6.06e-09 | 27 |
ecto-epithelial cell | 3.15e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
testis | 1.02e-28 | 8 |
male reproductive organ | 4.06e-21 | 11 |
gonad | 2.03e-11 | 21 |
indifferent external genitalia | 2.03e-11 | 21 |
indifferent gonad | 2.03e-11 | 21 |
gonad primordium | 2.03e-11 | 21 |
external genitalia | 6.26e-11 | 22 |
male organism | 6.26e-11 | 22 |
male reproductive system | 6.26e-11 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 6.26e-11 | 22 |
germ cell cancer | 6.26e-11 | 22 |