FFCP PHASE1:Hg19::chr12:100897130..100897149,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9971 | |EntrezGene=9971 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7967 | |HGNC=7967 | ||
|TSSclassifier=strong | |||
|UniProt=Q96RI1 | |UniProt=Q96RI1 | ||
|association_with_transcript=0bp_to_ENST00000188403,ENST00000551379,NM_001206992,NM_001206993,uc001ths.1,uc001tht.1_5end | |association_with_transcript=0bp_to_ENST00000188403,ENST00000551379,NM_001206992,NM_001206993,uc001ths.1,uc001tht.1_5end | ||
|cluster_id=chr12:100897130..100897149,+ | |||
|coexpression_cluster_id=C1009 | |coexpression_cluster_id=C1009 | ||
|description=CAGE_peak_3_at_NR1H4_5end | |description=CAGE_peak_3_at_NR1H4_5end | ||
|id=chr12:100897130..100897149,+ | |id=chr12:100897130..100897149,+ | ||
|ontology_enrichment_celltype=CL:0000181!2.80e-09!12;CL:0000417!2.80e-09!12;CL:0000668!2.80e-09!12;CL:0000414!2.80e-09!12;CL:0000412!2.80e-09!12;CL:0000182!2.80e-09!12 | |ontology_enrichment_celltype=CL:0000181!2.80e-09!12;CL:0000417!2.80e-09!12;CL:0000668!2.80e-09!12;CL:0000414!2.80e-09!12;CL:0000412!2.80e-09!12;CL:0000182!2.80e-09!12 | ||
|ontology_enrichment_celltype_v019=CL:0000182;4.46e-09;12!CL:0000313;5.90e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,4.46e-09,12;CL:0000313,5.70e-08,1 | |||
|ontology_enrichment_development_v019=UBERON:0003104;3.36e-12;31!UBERON:0003918;9.60e-11;10!UBERON:0007687;9.60e-11;10!UBERON:0004161;1.24e-09;11!UBERON:0009497;3.61e-08;13!UBERON:0006242;8.23e-08;1!UBERON:0001045;1.69e-07;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:2152;5.90e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:2152,5.70e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0000160!2.23e-14!27;UBERON:0009854!3.17e-14!23;UBERON:0005409!5.13e-13!35;UBERON:0009497!5.13e-13!25;UBERON:0000015!5.13e-13!25;UBERON:0002423!5.13e-13!25;UBERON:0006235!5.13e-13!25;UBERON:0004161!5.13e-13!25;UBERON:0005172!6.71e-13!55;UBERON:0005173!6.71e-13!55;UBERON:0004921!1.16e-12!129;UBERON:0004185!1.16e-12!129;UBERON:0009856!2.13e-12!26;UBERON:0008835!7.41e-12!22;UBERON:0003894!7.41e-12!22;UBERON:0002417!2.50e-11!61;UBERON:0000916!2.50e-11!61;UBERON:0002107!7.37e-11!19;UBERON:0006925!7.37e-11!19;UBERON:0008836!7.37e-11!19;UBERON:0001007!8.71e-11!155;UBERON:0001555!8.71e-11!155;UBERON:0007026!8.71e-11!155;UBERON:0004119!1.91e-10!169;UBERON:0000925!1.91e-10!169;UBERON:0006595!1.91e-10!169;UBERON:0007499!2.81e-10!25;UBERON:0000059!4.65e-10!11;UBERON:0003929!2.58e-09!54;UBERON:0001155!2.76e-08!9;UBERON:0005177!3.92e-08!107;UBERON:0005057!1.14e-07!26;UBERON:0000077!8.97e-07!130 | |ontology_enrichment_uberon=UBERON:0000160!2.23e-14!27;UBERON:0009854!3.17e-14!23;UBERON:0005409!5.13e-13!35;UBERON:0009497!5.13e-13!25;UBERON:0000015!5.13e-13!25;UBERON:0002423!5.13e-13!25;UBERON:0006235!5.13e-13!25;UBERON:0004161!5.13e-13!25;UBERON:0005172!6.71e-13!55;UBERON:0005173!6.71e-13!55;UBERON:0004921!1.16e-12!129;UBERON:0004185!1.16e-12!129;UBERON:0009856!2.13e-12!26;UBERON:0008835!7.41e-12!22;UBERON:0003894!7.41e-12!22;UBERON:0002417!2.50e-11!61;UBERON:0000916!2.50e-11!61;UBERON:0002107!7.37e-11!19;UBERON:0006925!7.37e-11!19;UBERON:0008836!7.37e-11!19;UBERON:0001007!8.71e-11!155;UBERON:0001555!8.71e-11!155;UBERON:0007026!8.71e-11!155;UBERON:0004119!1.91e-10!169;UBERON:0000925!1.91e-10!169;UBERON:0006595!1.91e-10!169;UBERON:0007499!2.81e-10!25;UBERON:0000059!4.65e-10!11;UBERON:0003929!2.58e-09!54;UBERON:0001155!2.76e-08!9;UBERON:0005177!3.92e-08!107;UBERON:0005057!1.14e-07!26;UBERON:0000077!8.97e-07!130 | ||
|ontology_enrichment_uberon_v019=UBERON:0000160;3.28e-22;17!UBERON:0005409;1.65e-21;22!UBERON:0004921;6.71e-13;33!UBERON:0002108;7.59e-13;4!UBERON:0002423;4.17e-12;25!UBERON:0002107;4.68e-12;19!UBERON:0006925;4.68e-12;19!UBERON:0001155;9.71e-12;9!UBERON:0000059;1.25e-09;11!UBERON:0005172;4.60e-09;52!UBERON:0005173;4.60e-09;52!UBERON:0001007;4.44e-08;81!UBERON:0004911;5.90e-08;1!UBERON:0001154;1.69e-07;1!UBERON:0001153;1.69e-07;1!UBERON:0009854;1.69e-07;1!UBERON:0002365;3.18e-07;31!UBERON:0002330;3.18e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,3.05e-22,17;UBERON:0005409,6.98e-19,25;UBERON:0009854,3.69e-13,23;UBERON:0002108,7.75e-13,4;UBERON:0005172,1.00e-12,54;UBERON:0005173,1.00e-12,54;UBERON:0009497,4.17e-12,25;UBERON:0000015,4.17e-12,25;UBERON:0002423,4.17e-12,25;UBERON:0006235,4.17e-12,25;UBERON:0004161,4.17e-12,25;UBERON:0002107,4.64e-12,19;UBERON:0006925,4.64e-12,19;UBERON:0008836,4.64e-12,19;UBERON:0001155,9.31e-12,9;UBERON:0009856,1.53e-11,26;UBERON:0002417,2.98e-11,60;UBERON:0000916,2.98e-11,60;UBERON:0008835,2.43e-10,22;UBERON:0003894,2.43e-10,22;UBERON:0000059,1.21e-09,11;UBERON:0004921,2.24e-09,118;UBERON:0007499,4.94e-09,25;UBERON:0001007,3.03e-08,145;UBERON:0001555,3.03e-08,145;UBERON:0007026,3.03e-08,145;UBERON:0004911,5.70e-08,1;UBERON:0001154,1.54e-07,1;UBERON:0001153,1.54e-07,1;UBERON:0001045,1.54e-07,1;UBERON:0004119,3.46e-07,160;UBERON:0000925,3.46e-07,160;UBERON:0006595,3.46e-07,160;UBERON:0002365,3.57e-07,31;UBERON:0002330,3.57e-07,31;UBERON:0005177,4.44e-07,101 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.7932549921139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.1536580090211,18.6737171168749,26.5855458006632,0,2.82873408649161,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,7.93415789687461,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.14232723417828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.91844864163565,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93398740871803,1.76352923497993,0,0,0,0,0.179021174675609,0,0.789147245095469,0,0,1.93866549219044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.97157158647103,10.2610774823873,20.1639947828096,0,0,0,0,0,0,0,0,0,0,14.5188859258397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.76323085796252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0,0,3.14967940847196,0,0,0,0,0,0,0,0,0,0,39.4816593568983,4.56354916774483,0,0,0,0,0,0,0,0,0,0,0,0,0,27.1121632304453,2.65013777824443,0,0,0.684347351537318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.56241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34454203369928,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0.235479278551542,0,0,0.913158720509496,29.3661524057325,1.43325506366115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.2906997253969,0,1.09726132484042,0,0,0,0.485710993059139,0,0,0,0,0,0,26.3163879148091,38.9036017697044,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,1.46067277649303,0,0,0,0,0,22.7481541421622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.7932549921139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.1536580090211,18.6737171168749,26.5855458006632,0,2.82873408649161,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,7.93415789687461,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.14232723417828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.91844864163565,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93398740871803,1.76352923497993,0,0,0,0,0.179021174675609,0,0.789147245095469,0,0,1.93866549219044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.97157158647103,10.2610774823873,20.1639947828096,0,0,0,0,0,0,0,0,0,0,14.5188859258397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.76323085796252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0,0,3.14967940847196,0,0,0,0,0,0,0,0,0,0,39.4816593568983,4.56354916774483,0,0,0,0,0,0,0,0,0,0,0,0,0,27.1121632304453,2.65013777824443,0,0,0.684347351537318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.56241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34454203369928,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0.235479278551542,0,0,0.913158720509496,29.3661524057325,1.43325506366115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.2906997253969,0,1.09726132484042,0,0,0,0.485710993059139,0,0,0,0,0,0,26.3163879148091,38.9036017697044,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,1.46067277649303,0,0,0,0,0,22.7481541421622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p3@NR1H4 | |short_description=p3@NR1H4 | ||
}} | }} |
Latest revision as of 07:26, 25 September 2015
Short description: | p3@NR1H4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NR1H4_5end |
Coexpression cluster: | C1009_kidney_liver_renal_Hepatocyte_small_temporal_pineal |
Association with transcript: | 0bp_to_ENST00000188403, ENST00000551379, NM_001206992, NM_001206993, uc001ths.1, uc001tht.1_5end |
EntrezGene: | NR1H4 |
HGNC: | 7967 |
UniProt: | Q96RI1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 4.46e-09 | 12 |
serous secreting cell | 5.70e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
intestine | 3.05e-22 | 17 |
gastrointestinal system | 6.98e-19 | 25 |
digestive tract diverticulum | 3.69e-13 | 23 |
small intestine | 7.75e-13 | 4 |
abdomen element | 1.00e-12 | 54 |
abdominal segment element | 1.00e-12 | 54 |
epithelium of foregut-midgut junction | 4.17e-12 | 25 |
anatomical boundary | 4.17e-12 | 25 |
hepatobiliary system | 4.17e-12 | 25 |
foregut-midgut junction | 4.17e-12 | 25 |
septum transversum | 4.17e-12 | 25 |
liver | 4.64e-12 | 19 |
digestive gland | 4.64e-12 | 19 |
liver bud | 4.64e-12 | 19 |
colon | 9.31e-12 | 9 |
sac | 1.53e-11 | 26 |
abdominal segment of trunk | 2.98e-11 | 60 |
abdomen | 2.98e-11 | 60 |
hepatic diverticulum | 2.43e-10 | 22 |
liver primordium | 2.43e-10 | 22 |
large intestine | 1.21e-09 | 11 |
subdivision of digestive tract | 2.24e-09 | 118 |
epithelial sac | 4.94e-09 | 25 |
digestive system | 3.03e-08 | 145 |
digestive tract | 3.03e-08 | 145 |
primitive gut | 3.03e-08 | 145 |
epithelium of female gonad | 5.70e-08 | 1 |
vermiform appendix | 1.54e-07 | 1 |
caecum | 1.54e-07 | 1 |
midgut | 1.54e-07 | 1 |
endoderm-derived structure | 3.46e-07 | 160 |
endoderm | 3.46e-07 | 160 |
presumptive endoderm | 3.46e-07 | 160 |
exocrine gland | 3.57e-07 | 31 |
exocrine system | 3.57e-07 | 31 |
trunk region element | 4.44e-07 | 101 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 5.70e-08 | 1 |