FFCP PHASE1:Mm9::chr19:8797968..8798004,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:8797968..8798004,+
|short_description=p1@Snhg1
|description=CAGE_peak_1_at_Snhg1_5end
|association_with_transcript=0bp_to_ENSMUST00000166221,ENSMUST000001...") |
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(8 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=83673 | |EntrezGene=83673 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=255 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENSMUST00000166221,ENSMUST00000171670,NR_002896,uc008gmj.2,uc008gmk.2,uc008gml.1_5end | |||
|cluster_id=chr19:8797968..8798004,+ | |||
|description=CAGE_peak_1_at_Snhg1_5end | |||
|id=chr19:8797968..8798004,+ | |||
|ontology_enrichment_celltype=CL:0000988!4.11e-12!32;CL:0002032!4.11e-12!32;CL:0000037!4.11e-12!32;CL:0000566!4.11e-12!32;CL:0000837!4.11e-12!32;CL:0002031!4.83e-10!25;CL:0000542!4.69e-09!13;CL:0000051!4.69e-09!13;CL:0000838!9.76e-09!12;CL:0000084!4.09e-08!11;CL:0000827!4.09e-08!11;CL:0000791!2.36e-07!9;CL:0000789!2.36e-07!9;CL:0002420!2.36e-07!9;CL:0002419!2.36e-07!9;CL:0000790!2.36e-07!9;CL:0002320!5.46e-07!46;CL:0000134!5.46e-07!46;CL:0000624!9.93e-07!8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,4.11e-12,32;CL:0002032,4.11e-12,32;CL:0000037,4.11e-12,32;CL:0000837,4.11e-12,32;CL:0002031,4.83e-10,25;CL:0000542,4.69e-09,13;CL:0000051,4.69e-09,13;CL:0000838,9.76e-09,12;CL:0000084,4.09e-08,11;CL:0000827,4.09e-08,11;CL:0000791,2.36e-07,9;CL:0000789,2.36e-07,9;CL:0002420,2.36e-07,9;CL:0002419,2.36e-07,9;CL:0000790,2.36e-07,9;CL:0002320,5.55e-07,46;CL:0000134,5.55e-07,46;CL:0000624,9.93e-07,8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!2.53e-07!29;UBERON:0002384!5.46e-07!46;UBERON:0002390!7.72e-07!45;UBERON:0003061!7.72e-07!45 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,2.46e-07,29;UBERON:0005057,2.46e-07,29;UBERON:0002384,5.55e-07,46;UBERON:0002390,7.56e-07,45;UBERON:0003061,7.56e-07,45;UBERON:0000153,8.79e-07,43 | |||
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|phase1_expression=20.4990524294136,8.37540978334467,6.3699893514535,11.4936400296595,15.5277676283368,5.37213670118047,6.77476657727024,48.9377395843574,77.293008461265,51.9623248434826,68.6584052584275,57.1168658406609,51.8738211691553,60.8446000836222,10.6595123781012,26.3217847606774,20.9868563438444,16.0885704332701,14.5341299622083,23.3414308488917,4.5072943780067,19.4610264353735,16.9779862940308,7.35965144849671,6.42345986988076,2.8711598205751,3.01533397311352,4.95583835177545,4.75058548640935,4.53654233567875,8.42575940490158,282.588649689536,236.79994322006,285.26702582779,36.1064524689093,19.1169842162266,28.5837098767317,6.69650609179052,8.5946887897618,9.42342739152837,25.8821854733646,6.83045484958446,5.82612423637384,6.04304726282771,6.48812359804893,9.72797786456912,2.34717403304412,2.39827672018491,1.97717564461025,2.91644848611425,2.79972843250725,1.43752564364972,30.3686516964503,29.7398478224651,33.6093799142464,5.40244815675489,12.0344044774278,5.15672092277442,1.82084814773638,6.34789175126439,3.80298842103708,5.76035704517525,5.33576877666684,3.5995988691256,3.9554654502679,4.9733608046227,2.39680088414724,2.68952813725088,9.64313394468842,5.67024940993101,5.8890989178387,3.42781181284564,1.98781686856452,4.16468717330844,3.73797336971122,11.9498442259303,2.20231761998777,1.78762273319263,3.07213066512487,3.56092976871523,3.11057988248193,5.2091337055676,1.3959149950069,1.12552522006336,3.20876320331301,2.35702868378934,4.9830088279686,3.91438836233131,14.6908815066377,13.5273092591146,26.087803983151,1.72084775396277,10.879541339324,1.61910957491345,3.24888208723835,0.896053774194671,3.23022166303029,13.1231348385104,8.83272415649754,14.1335829804136,7.60554466794075,7.69958864485907,0,0,17.9687564039308,16.9751109868316,13.6491600153991,4.45317130904334,13.2058320660058,5.34391700633369,16.8280766963152,7.91610243611567,11.761390360059,6.93324146542064,6.11461277105665,3.51866455723091,2.22475470960936,4.48258006451726,5.30766331169925,9.86777784679196,13.0296495891632,16.0008833534623,0,4.39171195517321,3.77004072264219,2.29911349687732,19.7694955434768,23.3962065087429,22.8726408731516,2.39665023047716,2.74500361691176,8.41884159156192,1.21677024134594,2.55715457330331,2.70124457927428,2.92034273521964,12.1188842981876,10.4501855312478,4.29628689337247,1.47309299120532,17.0457780281142,13.3343220571414,9.72335500948886,11.1521565198429,10.8858398642125,12.811372028485,10.026084527891,2.58703370739016,15.3053274982318,21.1798809787958,20.762232651346,10.9597866213787,9.73165372289593,19.1538691587192,14.404749548556,19.3063238813938,7.02213187313235,11.3233079130475,21.8805894534606,9.32065976409758,8.44293815931946,7.38254451990161,9.46978942340841,8.26409773339096,5.39934895105824,6.0458825635106,5.09719462659276,7.58974725386602,7.5697530960201,5.58169377868924,3.24275238183423,3.94739966048397,4.83010253640311,3.08674763148855,2.94405927989778,6.38008596751563,1.98251269790279,8.99131926656051,16.8497717922835,14.6309103272076,14.6908905907186,12.5043785266472,8.45036566610507,7.41879941838981,5.69434873853414,7.08205505313247,4.27269854960458,1.98956472041151,2.9244613067868,3.59527763461689,5.18731319699266,4.77939055810481,15.7424357791058,14.738058126655,24.7957018480777,13.4409876377907,10.6673867942194,13.3959415990508,7.3986748435381,1.18088118383682,3.767969468193,4.07210640941942,4.15033677922008,22.0235539545244,19.4593405162071,24.9596944747188,12.3744674046987,16.6412240229168,18.8423130318251,6.04161888646702,7.94462611197673,15.1008777253445,4.31304619582064,5.58211421502755,6.55279113540577,4.54641980304801,4.4849353380478,2.8946611281802,3.8798169934987,16.8647356475731,14.6668478797823,14.2585872051158,15.7242466353296,10.2178817039508,3.57065461329021,6.04914308359176,7.56648691709717,2.87904096543407,5.10255259703959,3.93271955317771,7.08008425650172,5.20736610893442,10.5553898757491,9.79030230873677,5.90117127622843,8.82997588175144,1.76605648986571,3.39913891117389,7.04920265119704,2.7771801992481,8.20321370482267,7.02789739733949,6.89354872744957,12.6653462914853,9.80314165962534,9.05844898524264,9.31064613852257,8.47541987942804,8.69633111482352,1.92792789853084,7.66476460124651,10.3278050127008,12.0536349921646,8.24850614862677,7.96470830039777,16.0235219862288,21.4649725444973,11.8821200246216,11.2214719294694,10.1453598821496,13.6966995379157,19.9943551212628,16.3988794056972,21.1744627816997,8.4334886859999,4.12542172992747,7.83011093233712,12.6042765821917,10.4780533864031,13.9319072770535,16.4926417287314,10.167022603318,8.39200005070817,13.3964577610424,3.98941903708308,3.1774810629573,7.05690873775878,11.2122652000206,7.91175690809937,15.8019863311768,7.16234064018819,6.89391778929257,2.33184669303881,2.59595422814714,10.9357363710626,12.5895989457566,18.3342582096015,27.8785316366943,7.38148829693536,21.2763701082066,13.4282959695146,19.5932033253121,16.1693969351176,1.90934123603023,17.0821436533813,15.2489600345137,12.8526355577944,14.21800412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| ||
|short_description=p1@Snhg1 | |||
}} | }} |
Latest revision as of 04:27, 26 September 2015
Short description: | p1@Snhg1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Snhg1_5end |
Coexpression cluster: | MCL_coexpression_mm9:255 |
Association with transcript: | 0bp_to_ENSMUST00000166221, ENSMUST00000171670, NR_002896, uc008gmj.2, uc008gmk.2, uc008gml.1_5end |
EntrezGene: | Snhg1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 4.11e-12 | 32 |
hematopoietic oligopotent progenitor cell | 4.11e-12 | 32 |
hematopoietic stem cell | 4.11e-12 | 32 |
hematopoietic multipotent progenitor cell | 4.11e-12 | 32 |
hematopoietic lineage restricted progenitor cell | 4.83e-10 | 25 |
lymphocyte | 4.69e-09 | 13 |
common lymphoid progenitor | 4.69e-09 | 13 |
lymphoid lineage restricted progenitor cell | 9.76e-09 | 12 |
T cell | 4.09e-08 | 11 |
pro-T cell | 4.09e-08 | 11 |
mature alpha-beta T cell | 2.36e-07 | 9 |
alpha-beta T cell | 2.36e-07 | 9 |
immature T cell | 2.36e-07 | 9 |
mature T cell | 2.36e-07 | 9 |
immature alpha-beta T cell | 2.36e-07 | 9 |
connective tissue cell | 5.55e-07 | 46 |
mesenchymal cell | 5.55e-07 | 46 |
CD4-positive, alpha-beta T cell | 9.93e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 2.46e-07 | 29 |
immune organ | 2.46e-07 | 29 |
connective tissue | 5.55e-07 | 46 |
hematopoietic system | 7.56e-07 | 45 |
blood island | 7.56e-07 | 45 |
anterior region of body | 8.79e-07 | 43 |