FFCP PHASE1:Mm9::chr17:71824625..71824680,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=74355 | |EntrezGene=74355 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=123 | |MCL_coexpression_id=123 | ||
|TSSclassifier=NA | |||
|UniProt=Q6P5D8 | |UniProt=Q6P5D8 | ||
|association_with_transcript=2bp_to_ENSMUST00000024850,ENSMUST00000127430,NM_028887,uc008dmh.1_5end | |association_with_transcript=2bp_to_ENSMUST00000024850,ENSMUST00000127430,NM_028887,uc008dmh.1_5end | ||
|cluster_id=chr17:71824625..71824680,- | |||
|description=CAGE_peak_1_at_Smchd1_5end | |description=CAGE_peak_1_at_Smchd1_5end | ||
|id=chr17:71824625..71824680,- | |id=chr17:71824625..71824680,- | ||
|ontology_enrichment_celltype=CL:0000542!3.24e-07!13;CL:0000051!3.24e-07!13;CL:0000838!5.57e-07!12;CL:0000988!5.76e-07!32;CL:0002032!5.76e-07!32;CL:0000037!5.76e-07!32;CL:0000566!5.76e-07!32;CL:0000837!5.76e-07!32 | |ontology_enrichment_celltype=CL:0000542!3.24e-07!13;CL:0000051!3.24e-07!13;CL:0000838!5.57e-07!12;CL:0000988!5.76e-07!32;CL:0002032!5.76e-07!32;CL:0000037!5.76e-07!32;CL:0000566!5.76e-07!32;CL:0000837!5.76e-07!32 | ||
|ontology_enrichment_celltype_v019_2=CL:0000542,3.24e-07,13;CL:0000051,3.24e-07,13;CL:0000838,5.57e-07,12;CL:0000988,5.76e-07,32;CL:0002032,5.76e-07,32;CL:0000037,5.76e-07,32;CL:0000837,5.76e-07,32 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!3.67e-12!29;UBERON:0002390!1.02e-09!45;UBERON:0003061!1.02e-09!45;UBERON:0002370!2.93e-09!23;UBERON:0000974!2.93e-09!23;UBERON:0004807!2.93e-09!23;UBERON:0005058!2.93e-09!23;UBERON:0003351!2.93e-09!23;UBERON:0009113!2.93e-09!23;UBERON:0003295!2.93e-09!23;UBERON:0009722!2.93e-09!23;UBERON:0005562!2.93e-09!23;UBERON:0007690!2.93e-09!23;UBERON:0002193!3.31e-09!48;UBERON:0003408!6.90e-09!24;UBERON:0000065!8.44e-09!41;UBERON:0001004!1.36e-08!42;UBERON:0006562!2.33e-08!24;UBERON:0001557!2.33e-08!24;UBERON:0001042!2.33e-08!24;UBERON:0008814!2.33e-08!24;UBERON:0009145!2.33e-08!24;UBERON:0003081!3.63e-07!88;UBERON:0005057!7.84e-07!51 | |ontology_enrichment_uberon=UBERON:0004177!3.67e-12!29;UBERON:0002390!1.02e-09!45;UBERON:0003061!1.02e-09!45;UBERON:0002370!2.93e-09!23;UBERON:0000974!2.93e-09!23;UBERON:0004807!2.93e-09!23;UBERON:0005058!2.93e-09!23;UBERON:0003351!2.93e-09!23;UBERON:0009113!2.93e-09!23;UBERON:0003295!2.93e-09!23;UBERON:0009722!2.93e-09!23;UBERON:0005562!2.93e-09!23;UBERON:0007690!2.93e-09!23;UBERON:0002193!3.31e-09!48;UBERON:0003408!6.90e-09!24;UBERON:0000065!8.44e-09!41;UBERON:0001004!1.36e-08!42;UBERON:0006562!2.33e-08!24;UBERON:0001557!2.33e-08!24;UBERON:0001042!2.33e-08!24;UBERON:0008814!2.33e-08!24;UBERON:0009145!2.33e-08!24;UBERON:0003081!3.63e-07!88;UBERON:0005057!7.84e-07!51 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,3.67e-12,29;UBERON:0005057,3.67e-12,29;UBERON:0000077,1.62e-10,35;UBERON:0002390,1.02e-09,45;UBERON:0003061,1.02e-09,45;UBERON:0002370,2.93e-09,23;UBERON:0000974,2.93e-09,23;UBERON:0004807,2.93e-09,23;UBERON:0005058,2.93e-09,23;UBERON:0003351,2.93e-09,23;UBERON:0009113,2.93e-09,23;UBERON:0003295,2.93e-09,23;UBERON:0009722,2.93e-09,23;UBERON:0005562,2.93e-09,23;UBERON:0007690,2.93e-09,23;UBERON:0002193,3.31e-09,48;UBERON:0002405,3.31e-09,48;UBERON:0003408,6.90e-09,24;UBERON:0000153,6.92e-09,43;UBERON:0000065,8.44e-09,41;UBERON:0001004,1.36e-08,42;UBERON:0006562,2.33e-08,24;UBERON:0001557,2.33e-08,24;UBERON:0001042,2.33e-08,24;UBERON:0008814,2.33e-08,24;UBERON:0009145,2.33e-08,24;UBERON:0007811,2.10e-07,36;UBERON:0001041,5.38e-07,80;UBERON:0003081,9.48e-07,87 | |||
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| ||
|short_description=p1@Smchd1 | |short_description=p1@Smchd1 | ||
}} | }} |
Latest revision as of 20:39, 26 September 2015
Short description: | p1@Smchd1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Smchd1_5end |
Coexpression cluster: | MCL_coexpression_mm9:123 |
Association with transcript: | 2bp_to_ENSMUST00000024850, ENSMUST00000127430, NM_028887, uc008dmh.1_5end |
EntrezGene: | Smchd1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 3.24e-07 | 13 |
common lymphoid progenitor | 3.24e-07 | 13 |
lymphoid lineage restricted progenitor cell | 5.57e-07 | 12 |
hematopoietic cell | 5.76e-07 | 32 |
hematopoietic oligopotent progenitor cell | 5.76e-07 | 32 |
hematopoietic stem cell | 5.76e-07 | 32 |
hematopoietic multipotent progenitor cell | 5.76e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 3.67e-12 | 29 |
immune organ | 3.67e-12 | 29 |
mixed endoderm/mesoderm-derived structure | 1.62e-10 | 35 |
hematopoietic system | 1.02e-09 | 45 |
blood island | 1.02e-09 | 45 |
thymus | 2.93e-09 | 23 |
neck | 2.93e-09 | 23 |
respiratory system epithelium | 2.93e-09 | 23 |
hemolymphoid system gland | 2.93e-09 | 23 |
pharyngeal epithelium | 2.93e-09 | 23 |
thymic region | 2.93e-09 | 23 |
pharyngeal gland | 2.93e-09 | 23 |
entire pharyngeal arch endoderm | 2.93e-09 | 23 |
thymus primordium | 2.93e-09 | 23 |
early pharyngeal endoderm | 2.93e-09 | 23 |
hemolymphoid system | 3.31e-09 | 48 |
immune system | 3.31e-09 | 48 |
gland of gut | 6.90e-09 | 24 |
anterior region of body | 6.92e-09 | 43 |
respiratory tract | 8.44e-09 | 41 |
respiratory system | 1.36e-08 | 42 |
pharynx | 2.33e-08 | 24 |
upper respiratory tract | 2.33e-08 | 24 |
chordate pharynx | 2.33e-08 | 24 |
pharyngeal arch system | 2.33e-08 | 24 |
pharyngeal region of foregut | 2.33e-08 | 24 |
craniocervical region | 2.10e-07 | 36 |
foregut | 5.38e-07 | 80 |
lateral plate mesoderm | 9.48e-07 | 87 |