FFCP PHASE1:Mm9::chr15:67008386..67008403,-: Difference between revisions
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{{FFCP|EntrezGene=20442|HGNC=|MCL_coexpression_id=122|UniProt=P54751,Q544T4|association_with_transcript=40bp_to_NM_009177,uc007wba.1,uc007wbb.1_5end|description=CAGE_peak_3_at_St3gal1_5end|id=chr15:67008386..67008403,-|ontology_enrichment_celltype=CL:0000988!3.00e-07!32;CL:0002032!3.00e-07!32;CL:0000037!3.00e-07!32;CL:0000566!3.00e-07!32;CL:0000837!3.00e-07!32;CL:0002031!7.65e-07!25|ontology_enrichment_celltype_v019_2=CL:0002031,8.79e-08,25;CL:0000988,1.01e-07,32;CL:0002032,1.01e-07,32;CL:0000037,1.01e-07,32;CL:0000837,1.01e-07,32;CL:0000838,9.82e-07,12|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!5.67e-12!45;UBERON:0003061!5.67e-12!45;UBERON:0002193!7.29e-11!48;UBERON:0004177!7.60e-10!29;UBERON:0002405!5.40e-08!70;UBERON:0002370!3.60e-07!23;UBERON:0000974!3.60e-07!23;UBERON:0004807!3.60e-07!23;UBERON:0005058!3.60e-07!23;UBERON:0003351!3.60e-07!23;UBERON:0009113!3.60e-07!23;UBERON:0003295!3.60e-07!23;UBERON:0009722!3.60e-07!23;UBERON:0005562!3.60e-07!23;UBERON:0007690!3.60e-07!23|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.00e-13,45;UBERON:0003061,5.00e-13,45;UBERON:0002193,3.17e-12,48;UBERON:0002405,3.17e-12,48;UBERON:0004177,7.50e-11,29;UBERON:0005057,7.50e-11,29;UBERON:0002370,5.92e-08,23;UBERON:0000974,5.92e-08,23;UBERON:0004807,5.92e-08,23;UBERON:0005058,5.92e-08,23;UBERON:0003351,5.92e-08,23;UBERON:0009113,5.92e-08,23;UBERON:0003295,5.92e-08,23;UBERON:0009722,5.92e-08,23;UBERON:0005562,5.92e-08,23;UBERON:0007690,5.92e-08,23;UBERON:0006562,3.36e-07,24;UBERON:0003408,3.36e-07,24;UBERON:0001557,3.36e-07,24;UBERON:0001042,3.36e-07,24;UBERON:0008814,3.36e-07,24;UBERON:0009145,3.36e-07,24;UBERON:0000077,4.08e-07,35|phase1_expression=0.960893082628764,0.697950815278722,0,0,0,0.16787927191189,0.233612640595526,3.22808308603941,3.09735188733667,3.97909694747389,3.25314139628459,1.83475965689274,4.62241970814255,3.75907730401689,3.33109761815663,3.84703008040669,3.49780939064073,15.1421839371954,11.6547268564878,5.09267582157636,0.425216450755349,1.68794617041505,1.56719873483361,0.319984845586813,0,0.57423196411502,0,0.215471232685889,0.190023419456374,1.00812051903972,0,2.54012269383853,2.46025915033828,0,0,0,0,0.837063261473815,0.7813353445238,2.09409497589519,1.76469446409304,2.04913645487534,2.91306211818692,0.125896817975577,0.709638518536602,1.83546752161682,0.782391344348039,2.18025156380447,0.878744730937887,0.58328969722285,1.67983705950435,2.87505128729943,5.87239121202077,5.07753499407941,7.05796978199174,0.257259436035947,1.14613375975503,1.03134418455488,1.21389876515759,0.528990979272033,1.90149421051854,1.0165335962074,0.889294796111139,2.6996991518442,0.988866362566974,2.1314403448383,1.19840044207362,1.15265491596466,2.90330914463737,3.51015439662396,3.36519938162211,2.28520787523043,1.32521124570968,2.44981598429908,2.20444583341944,5.51531271966013,0,1.78762273319263,1.53606533256243,0.791317726381163,1.82975287204819,0.52091337055676,1.67509799400829,4.50210088025344,1.06958773443767,1.47314292736834,1.70846016958924,1.3047961207771,0.832988126665025,0.831287161174641,0.869593466105033,0.860423876981386,0.679971333707751,2.15881276655127,0,0.448026887097336,0.983110940922263,0.681721290312231,0.519572009205738,0,0.422530259330042,0,7.64415719119937,0,0,0.760079596425296,0,0.68510327831436,5.69663344023778,0.593768556259299,1.21439728736295,1.21786191324856,1.61430848079241,0.60289056221049,1.05829836422134,0.251333182659351,2.22475470960936,1.59059292611903,6.19227386364912,1.13236794963186,3.5334642953663,2.42437626567611,0,0.292780797011547,0,1.27728527604296,2.63593273913025,1.79970819298022,0.889491589511453,1.79748767285787,0,1.38219787324151,2.08589184230732,1.79000820131231,0.62336413367868,1.62241263067758,1.2220723662038,3.6078021476927,0.505445516867349,1.26265113531884,1.43132487258974,1.60931473103431,1.44049703844279,1.20563854268572,1.56483948048054,1.2811372028485,1.21812241927647,4.13925393182425,0.431135985865684,2.45837904218165,1.40760899331159,1.53437012699302,0.834141747676794,1.0447564995665,0.411564272815887,2.38841120182192,2.1066395619397,2.31613116403244,1.70498099637356,2.07125772535502,0.469052119962192,1.80062061461015,0.710234206755631,1.57411385397923,1.23413690309903,0.465067889500816,1.07309360559848,1.40118410840603,0.987359099480883,0.985004784474571,0.486412857275134,0.730999937126662,1.3173006917463,0.805238512562231,2.73376933133365,2.26390147234426,0.330418782983798,0.528901133327089,0.853153002140936,0.928946687441754,0.902072229254653,0.605050573870028,1.33426826306922,0.570676878337677,0,0.658795818896044,2.01068167040216,0.795825888164603,0.974820435595601,1.79763881730844,0.648414149624083,0.597423819763102,2.0863469104839,1.14248512609729,2.25415471346161,0.610953983535943,1.74557238450863,0.911765658574141,0.885311519739602,0.442830443938806,0.627994911365499,0.987177311374404,0.592905254174298,1.83529616287703,1.76903095601883,2.02375901146368,3.85434230638156,1.92941727801933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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20442 | |||
|HGNC= | |||
|MCL_coexpression_id=122 | |||
|TSSclassifier=NA | |||
|UniProt=P54751,Q544T4 | |||
|association_with_transcript=40bp_to_NM_009177,uc007wba.1,uc007wbb.1_5end | |||
|cluster_id=chr15:67008386..67008403,- | |||
|description=CAGE_peak_3_at_St3gal1_5end | |||
|id=chr15:67008386..67008403,- | |||
|ontology_enrichment_celltype=CL:0000988!3.00e-07!32;CL:0002032!3.00e-07!32;CL:0000037!3.00e-07!32;CL:0000566!3.00e-07!32;CL:0000837!3.00e-07!32;CL:0002031!7.65e-07!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002031,8.79e-08,25;CL:0000988,1.01e-07,32;CL:0002032,1.01e-07,32;CL:0000037,1.01e-07,32;CL:0000837,1.01e-07,32;CL:0000838,9.82e-07,12 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!5.67e-12!45;UBERON:0003061!5.67e-12!45;UBERON:0002193!7.29e-11!48;UBERON:0004177!7.60e-10!29;UBERON:0002405!5.40e-08!70;UBERON:0002370!3.60e-07!23;UBERON:0000974!3.60e-07!23;UBERON:0004807!3.60e-07!23;UBERON:0005058!3.60e-07!23;UBERON:0003351!3.60e-07!23;UBERON:0009113!3.60e-07!23;UBERON:0003295!3.60e-07!23;UBERON:0009722!3.60e-07!23;UBERON:0005562!3.60e-07!23;UBERON:0007690!3.60e-07!23 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.00e-13,45;UBERON:0003061,5.00e-13,45;UBERON:0002193,3.17e-12,48;UBERON:0002405,3.17e-12,48;UBERON:0004177,7.50e-11,29;UBERON:0005057,7.50e-11,29;UBERON:0002370,5.92e-08,23;UBERON:0000974,5.92e-08,23;UBERON:0004807,5.92e-08,23;UBERON:0005058,5.92e-08,23;UBERON:0003351,5.92e-08,23;UBERON:0009113,5.92e-08,23;UBERON:0003295,5.92e-08,23;UBERON:0009722,5.92e-08,23;UBERON:0005562,5.92e-08,23;UBERON:0007690,5.92e-08,23;UBERON:0006562,3.36e-07,24;UBERON:0003408,3.36e-07,24;UBERON:0001557,3.36e-07,24;UBERON:0001042,3.36e-07,24;UBERON:0008814,3.36e-07,24;UBERON:0009145,3.36e-07,24;UBERON:0000077,4.08e-07,35 | |||
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| |||
|short_description=p3@St3gal1 | |||
}} |
Latest revision as of 22:22, 26 September 2015
Short description: | p3@St3gal1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_St3gal1_5end |
Coexpression cluster: | MCL_coexpression_mm9:122 |
Association with transcript: | 40bp_to_NM_009177, uc007wba.1, uc007wbb.1_5end |
EntrezGene: | St3gal1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic lineage restricted progenitor cell | 8.79e-08 | 25 |
hematopoietic cell | 1.01e-07 | 32 |
hematopoietic oligopotent progenitor cell | 1.01e-07 | 32 |
hematopoietic stem cell | 1.01e-07 | 32 |
hematopoietic multipotent progenitor cell | 1.01e-07 | 32 |
lymphoid lineage restricted progenitor cell | 9.82e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 5.00e-13 | 45 |
blood island | 5.00e-13 | 45 |
hemolymphoid system | 3.17e-12 | 48 |
immune system | 3.17e-12 | 48 |
hemopoietic organ | 7.50e-11 | 29 |
immune organ | 7.50e-11 | 29 |
thymus | 5.92e-08 | 23 |
neck | 5.92e-08 | 23 |
respiratory system epithelium | 5.92e-08 | 23 |
hemolymphoid system gland | 5.92e-08 | 23 |
pharyngeal epithelium | 5.92e-08 | 23 |
thymic region | 5.92e-08 | 23 |
pharyngeal gland | 5.92e-08 | 23 |
entire pharyngeal arch endoderm | 5.92e-08 | 23 |
thymus primordium | 5.92e-08 | 23 |
early pharyngeal endoderm | 5.92e-08 | 23 |
pharynx | 3.36e-07 | 24 |
gland of gut | 3.36e-07 | 24 |
upper respiratory tract | 3.36e-07 | 24 |
chordate pharynx | 3.36e-07 | 24 |
pharyngeal arch system | 3.36e-07 | 24 |
pharyngeal region of foregut | 3.36e-07 | 24 |
mixed endoderm/mesoderm-derived structure | 4.08e-07 | 35 |