Personal tools

FFCP PHASE1:Mm9::chr6:29476684..29476685,+: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{FFCP
{{FFCP
|DHSsupport=NA
|DPIdataset=NA
|EntrezGene=27056
|EntrezGene=27056
|HGNC=
|HGNC=
|MCL_coexpression_id=38
|MCL_coexpression_id=38
|TSSclassifier=NA
|UniProt=Q3U169
|UniProt=Q3U169
|association_with_transcript=-47bp_to_uc009bdu.1,uc009bdv.1_5end
|association_with_transcript=-47bp_to_uc009bdu.1,uc009bdv.1_5end
|cluster_id=chr6:29476684..29476685,+
|description=CAGE_peak_6_at_Irf5_5end
|description=CAGE_peak_6_at_Irf5_5end
|id=chr6:29476684..29476685,+
|id=chr6:29476684..29476685,+
|ontology_enrichment_celltype=CL:0000988!8.37e-07!32;CL:0002032!8.37e-07!32;CL:0000037!8.37e-07!32;CL:0000566!8.37e-07!32;CL:0000837!8.37e-07!32
|ontology_enrichment_celltype=CL:0000988!8.37e-07!32;CL:0002032!8.37e-07!32;CL:0000037!8.37e-07!32;CL:0000566!8.37e-07!32;CL:0000837!8.37e-07!32
|ontology_enrichment_celltype_v019_2=CL:0002092,3.35e-23,3;CL:0002540,3.35e-23,3;CL:0002476,3.44e-16,2;CL:0000839,1.63e-09,13;CL:0002194,1.48e-08,4;CL:0000766,1.48e-08,4;CL:0000234,1.48e-08,4;CL:0000576,1.48e-08,4;CL:0000235,1.48e-08,4;CL:0000864,1.48e-08,4;CL:0002009,1.48e-08,4;CL:0000040,1.48e-08,4;CL:0000559,1.48e-08,4;CL:0000763,8.99e-08,16;CL:0002320,1.48e-07,46;CL:0000134,1.48e-07,46
|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0002193!4.56e-12!48;UBERON:0002405!6.84e-11!70;UBERON:0002390!1.53e-10!45;UBERON:0003061!1.53e-10!45;UBERON:0002371!4.22e-09!16;UBERON:0002204!5.82e-09!32;UBERON:0001474!1.27e-08!22;UBERON:0004765!1.27e-08!22;UBERON:0001434!1.27e-08!22;UBERON:0003081!5.03e-08!88
|ontology_enrichment_uberon=UBERON:0002193!4.56e-12!48;UBERON:0002405!6.84e-11!70;UBERON:0002390!1.53e-10!45;UBERON:0003061!1.53e-10!45;UBERON:0002371!4.22e-09!16;UBERON:0002204!5.82e-09!32;UBERON:0001474!1.27e-08!22;UBERON:0004765!1.27e-08!22;UBERON:0001434!1.27e-08!22;UBERON:0003081!5.03e-08!88
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.52e-22,16;UBERON:0001474,2.65e-16,22;UBERON:0004765,2.65e-16,22;UBERON:0001434,2.65e-16,22;UBERON:0002204,4.45e-11,32;UBERON:0002390,9.78e-08,45;UBERON:0003061,9.78e-08,45;UBERON:0002384,1.48e-07,46;UBERON:0002193,3.21e-07,48;UBERON:0002405,3.21e-07,48
|phase1_expression=0,0,0,0,0,0.16787927191189,0.233612640595526,0.258246646883153,0.140788722151667,0.468129052643987,0,0.239316476986009,0,0,0.333109761815663,0.202475267389826,0,2.36596624018678,1.09691546884591,0,0.0850432901510698,0.297872853602656,0.261199789138935,0.319984845586813,0.22940928106717,0,0,0.430942465371778,0,0,0,0,0,0,0,0,0,0,0,0,1.17646297606203,0.683045484958446,0,0.125896817975577,0.101376931219515,0,0,0,0,0.194429899074283,0,0,0.838913030288682,0,0,0.257259436035947,0.286533439938757,0.515672092277442,0,0,0,0,0,3.5995988691256,1.97773272513395,2.1314403448383,0.599200221036809,0.768436610643109,0.103689612308478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142371680799103,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0.258937883647172,0.148442139064825,0,0,0,0,0,0.125666591329675,0,0.144599356919912,0.884610551949874,0.161766849947409,0.441683036920787,0,0,0,0,0,0.479260498023681,0,0.381210681219194,0,0,0,0,0,0,0,0,0.248813941220186,0.252722758433675,0,0,0,0,0.150704817835715,0.0680364991513279,0,0,0,0,0,0.175951124163949,0,0,0,0,0,0,0.51469581422943,0.284163499395593,0,0,0.180062061461015,0,0,0,0,0,0,0,0.164167464079095,0,0,0,0,0,0,0,0,0.213288250535234,0,0,0.403367049246685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156998727841375,0.123397163921801,0.296452627087149,0.166845105716094,0,0,0.202860121388503,0,0,0,0.486405680325106,0,1.43768206527355,0.744281895337007,0,1.01031551178845,0.538192240565737,0,0,0,0,0,0,0,0,0,0.315270288212382,0.221464689648775,0.159454768657487,0.163863314715738,0.518054945597687,0.144649058581512,3.01582567878545,2.17562273527484,0,0,0,0,0.163934945376675,0.252470927204373,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0.162886959353576,0.164970122972535,1.32745138339963,0,0,0,0,0,0,0,0,0,0,1.03135543248187,0,0,0,0,0,0,0,0,0,0,0,0.65954501176592,0.161464426695906,0.0603129249281559,0.238744688006273,0.164140899745061,0,0.18542530201051,0.683483523191411,0.412773735926445,0.185194527369712,0.753473828018764,0.820165366326151,0.915112692826091,0,0.279902904647316,0.414599921413271,0,0.158167996790568,0,0.324016022465404,0,0,0.539457385539283,0.247960367176008,0,0,0,0,0.149516546043979,0,0.194451188344048,0,0.337912250981556,0,0,0,0.241584120826006,0,0,0.405450430580328,0.102710957164827,0,0,0.198681354781265,0,0.147689527174577,0.201932899896295,0.0762068066549998,0.100826185136841,0.0974578807397524,0,0.116876902181569,0.453460767230423,0,0,0,0,0,0,0.428736758158132,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170733605754134,0,0,0,0,0,0,0.252697211763798,0,0,0,0.0640251524048693,0,0,0.231768651889711,0,0,0,0,0,0,0,0,0,0.182927972872773,0.263069711437843,0,0,0,0,0,0,0.192906610981141,0.499621155875892,0,0.214871054048298,0,0,0.231867835620421
|phase1_expression=0,0,0,0,0,0.16787927191189,0.233612640595526,0.258246646883153,0.140788722151667,0.468129052643987,0,0.239316476986009,0,0,0.333109761815663,0.202475267389826,0,2.36596624018678,1.09691546884591,0,0.0850432901510698,0.297872853602656,0.261199789138935,0.319984845586813,0.22940928106717,0,0,0.430942465371778,0,0,0,0,0,0,0,0,0,0,0,0,1.17646297606203,0.683045484958446,0,0.125896817975577,0.101376931219515,0,0,0,0,0.194429899074283,0,0,0.838913030288682,0,0,0.257259436035947,0.286533439938757,0.515672092277442,0,0,0,0,0,3.5995988691256,1.97773272513395,2.1314403448383,0.599200221036809,0.768436610643109,0.103689612308478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142371680799103,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0.258937883647172,0.148442139064825,0,0,0,0,0,0.125666591329675,0,0.144599356919912,0.884610551949874,0.161766849947409,0.441683036920787,0,0,0,0,0,0.479260498023681,0,0.381210681219194,0,0,0,0,0,0,0,0,0.248813941220186,0.252722758433675,0,0,0,0,0.150704817835715,0.0680364991513279,0,0,0,0,0,0.175951124163949,0,0,0,0,0,0,0.51469581422943,0.284163499395593,0,0,0.180062061461015,0,0,0,0,0,0,0,0.164167464079095,0,0,0,0,0,0,0,0,0.213288250535234,0,0,0.403367049246685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156998727841375,0.123397163921801,0.296452627087149,0.166845105716094,0,0,0.202860121388503,0,0,0,0.486405680325106,0,1.43768206527355,0.744281895337007,0,1.01031551178845,0.538192240565737,0,0,0,0,0,0,0,0,0,0.315270288212382,0.221464689648775,0.159454768657487,0.163863314715738,0.518054945597687,0.144649058581512,3.01582567878545,2.17562273527484,0,0,0,0,0.163934945376675,0.252470927204373,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0.162886959353576,0.164970122972535,1.32745138339963,0,0,0,0,0,0,0,0,0,0,1.03135543248187,0,0,0,0,0,0,0,0,0,0,0,0.65954501176592,0.161464426695906,0.0603129249281559,0.238744688006273,0.164140899745061,0,0.18542530201051,0.683483523191411,0.412773735926445,0.185194527369712,0.753473828018764,0.820165366326151,0.915112692826091,0,0.279902904647316,0.414599921413271,0,0.158167996790568,0,0.324016022465404,0,0,0.539457385539283,0.247960367176008,0,0,0,0,0.149516546043979,0,0.194451188344048,0,0.337912250981556,0,0,0,0.241584120826006,0,0,0.405450430580328,0.102710957164827,0,0,0.198681354781265,0,0.147689527174577,0.201932899896295,0.0762068066549998,0.100826185136841,0.0974578807397524,0,0.116876902181569,0.453460767230423,0,0,0,0,0,0,0.428736758158132,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170733605754134,0,0,0,0,0,0,0.252697211763798,0,0,0,0.0640251524048693,0,0,0.231768651889711,0,0,0,0,0,0,0,0,0,0.182927972872773,0.263069711437843,0,0,0,0,0,0,0.192906610981141,0.499621155875892,0,0.214871054048298,0,0,0.231867835620421
|short_description=p6@Irf5
|short_description=p6@Irf5
}}
}}

Latest revision as of 00:57, 27 September 2015

Short description:p6@Irf5
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_6_at_Irf5_5end
Coexpression cluster:MCL_coexpression_mm9:38
Association with transcript: -47bp_to_uc009bdu.1, uc009bdv.1_5end
EntrezGene:Irf5
Link to Zenbu:ZENBU


View on UCSC genome browser


Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression




0.0
0.5
1.0
1.5
2.0
2.5
3.0
3.5
4.0




  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data