FFCP PHASE1:Mm9::chr18:77094894..77094905,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=664805 | |EntrezGene=664805 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=A7M7C7 | |UniProt=A7M7C7 | ||
|association_with_transcript=-238bp_to_ENSMUST00000166956,NM_001109743,uc008fqq.1_5end | |association_with_transcript=-238bp_to_ENSMUST00000166956,NM_001109743,uc008fqq.1_5end | ||
|cluster_id=chr18:77094894..77094905,+ | |||
|description=CAGE_peak_2_at_Skor2_5end | |description=CAGE_peak_2_at_Skor2_5end | ||
|id=chr18:77094894..77094905,+ | |id=chr18:77094894..77094905,+ | ||
|ontology_enrichment_celltype=CL:0000120!3.67e-07!3;CL:0002612!6.46e-07!3 | |ontology_enrichment_celltype=CL:0000120!3.67e-07!3;CL:0002612!6.46e-07!3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000120,1.42e-23,3;CL:0002612,1.31e-22,3;CL:0000117,1.73e-15,23;CL:0000337,1.73e-15,23;CL:0000540,1.15e-10,33;CL:0000047,1.15e-10,33;CL:0000031,1.15e-10,33;CL:0000404,1.15e-10,33;CL:0000393,5.93e-09,39;CL:0000211,5.93e-09,39;CL:0002319,4.50e-08,43;CL:0000221,7.04e-08,44;CL:0000133,7.04e-08,44 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003076!3.21e-12!12;UBERON:0003057!3.21e-12!12;UBERON:0002240!1.77e-08!6;UBERON:0005174!1.77e-08!6;UBERON:0001137!1.77e-08!6;UBERON:0002257!6.46e-07!3;UBERON:0001948!7.00e-07!5;UBERON:0002315!7.00e-07!5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001948,1.10e-23,5;UBERON:0002315,1.10e-23,5;UBERON:0002257,1.31e-22,3;UBERON:0003076,7.27e-22,12;UBERON:0003057,7.27e-22,12;UBERON:0002240,8.28e-20,6;UBERON:0005174,8.28e-20,6;UBERON:0001137,8.28e-20,6;UBERON:0002037,2.08e-08,4;UBERON:0002680,2.08e-08,4;UBERON:0001895,2.08e-08,4;UBERON:0010092,2.08e-08,4;UBERON:0006215,2.08e-08,4;UBERON:0001017,1.60e-07,73;UBERON:0001016,2.69e-07,75 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340173160604279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.47412674750713,4.7609188134483,7.60597684207415,0,0,0,0,0,0,0,0,0,0,0,2.87129103237098,0,0,0,0,0,0.307213066512487,0,0,0.52091337055676,0.279182999001381,0,0,3.53554302568401,1.99320353118744,3.72798891650601,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.14839673724249,3.14170060220183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210441855886474,0,0,0,0,0,0,0.0937017245597288,0.517406741478031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.963303539926752,0.35163505977661,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178368817602071,0.493647061806363,0.304464949114599,0,0,0,0,0,0,0,0,0,0.927126510052548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03787347584177,1.19707462020309,1.36586884603307,0,0.209613162627982,0.367687016900028,0.222246727801615,0.206035057238894,0.320919209591815,0.252697211763798,0.25347929989024,0.188626341386076,0.187283014939765,0.192075457214608,0.287177344778066,0,0.347652977834566,0,0.412085900803307,0.294397840268795,0.342869252385415,0,0.238436189947321,0,0.188218760830661,0.423073039458382,0,0.263069711437843,0.271608227691724,0.561142271657738,0,0.492522411877817,0,0,0.192906610981141,0.749431733813838,0.467863216890817,0.214871054048298,0,0.220591419119515,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340173160604279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.47412674750713,4.7609188134483,7.60597684207415,0,0,0,0,0,0,0,0,0,0,0,2.87129103237098,0,0,0,0,0,0.307213066512487,0,0,0.52091337055676,0.279182999001381,0,0,3.53554302568401,1.99320353118744,3.72798891650601,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.14839673724249,3.14170060220183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210441855886474,0,0,0,0,0,0,0.0937017245597288,0.517406741478031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.963303539926752,0.35163505977661,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178368817602071,0.493647061806363,0.304464949114599,0,0,0,0,0,0,0,0,0,0.927126510052548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03787347584177,1.19707462020309,1.36586884603307,0,0.209613162627982,0.367687016900028,0.222246727801615,0.206035057238894,0.320919209591815,0.252697211763798,0.25347929989024,0.188626341386076,0.187283014939765,0.192075457214608,0.287177344778066,0,0.347652977834566,0,0.412085900803307,0.294397840268795,0.342869252385415,0,0.238436189947321,0,0.188218760830661,0.423073039458382,0,0.263069711437843,0.271608227691724,0.561142271657738,0,0.492522411877817,0,0,0.192906610981141,0.749431733813838,0.467863216890817,0.214871054048298,0,0.220591419119515,0 | ||
|short_description=p2@Skor2 | |short_description=p2@Skor2 | ||
}} | }} |
Latest revision as of 17:51, 1 October 2015
Short description: | p2@Skor2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Skor2_5end |
Coexpression cluster: | NA |
Association with transcript: | -238bp_to_ENSMUST00000166956, NM_001109743, uc008fqq.1_5end |
EntrezGene: | Skor2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granule cell | 1.42e-23 | 3 |
neuron of the ventral spinal cord | 1.31e-22 | 3 |
CNS neuron (sensu Vertebrata) | 1.73e-15 | 23 |
neuroblast (sensu Vertebrata) | 1.73e-15 | 23 |
neuron | 1.15e-10 | 33 |
neuronal stem cell | 1.15e-10 | 33 |
neuroblast | 1.15e-10 | 33 |
electrically signaling cell | 1.15e-10 | 33 |
electrically responsive cell | 5.93e-09 | 39 |
electrically active cell | 5.93e-09 | 39 |
neural cell | 4.50e-08 | 43 |
ectodermal cell | 7.04e-08 | 44 |
neurectodermal cell | 7.04e-08 | 44 |
Ontology term | p-value | n |
---|---|---|
regional part of spinal cord | 1.10e-23 | 5 |
gray matter of spinal cord | 1.10e-23 | 5 |
ventral horn of spinal cord | 1.31e-22 | 3 |
posterior neural tube | 7.27e-22 | 12 |
chordal neural plate | 7.27e-22 | 12 |
spinal cord | 8.28e-20 | 6 |
dorsal region element | 8.28e-20 | 6 |
dorsum | 8.28e-20 | 6 |
cerebellum | 2.08e-08 | 4 |
regional part of metencephalon | 2.08e-08 | 4 |
metencephalon | 2.08e-08 | 4 |
future metencephalon | 2.08e-08 | 4 |
rhombic lip | 2.08e-08 | 4 |
central nervous system | 1.60e-07 | 73 |
nervous system | 2.69e-07 | 75 |