FF:413-26A8: Difference between revisions

Latest revision as of 19:16, 4 June 2020

Name:	forelimb, embryo E14
Species:	Mouse (Mus musculus)
Library ID:	CNhs10577
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	forelimb
dev stage	14 days embryo
sex	mixture
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005821

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10577		CAGE		DRX008966		DRR009840

Accession ID Mm9

Library id		BAM		CTSS
CNhs10577		DRZ001265		DRZ002648

Accession ID Mm10

Library id		BAM		CTSS
CNhs10577		DRZ012615		DRZ013998

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs10577

0	0
1	0
10	0
100	0
1000	0
1001	-0.0275
1002	0.1
1003	0.208
1004	0
1005	0
1006	-0.0589
1007	0.0577
1008	0
1009	-0.00941
101	0.0717
1010	0
1011	0
1012	0
1013	-0.126
1014	0.319
1015	0.3
1016	0.386
1017	0
1018	0.321
1019	0
102	0
1020	0
1021	0.158
1022	0
1023	0
1024	-0.0337
1025	0
1026	0.0566
1027	0.0374
1028	0
1029	-0.0899
103	0.321
1030	0
1031	0.357
1032	-0.0243
1033	0.0109
1034	0
1035	0
1036	0.14
1037	0
1038	-0.00817
1039	-0.129
104	0
1040	0.101
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10577

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00477
MA0003.1	MA0003.1	0.727
MA0004.1	MA0004.1	0.959
MA0006.1	MA0006.1	0.684
MA0007.1	MA0007.1	0.278
MA0009.1	MA0009.1	0.265
MA0014.1	MA0014.1	0.155
MA0017.1	MA0017.1	1.88791e-8
MA0018.2	MA0018.2	0.728
MA0019.1	MA0019.1	0.663
MA0024.1	MA0024.1	2.87209e-4
MA0025.1	MA0025.1	0.264
MA0027.1	MA0027.1	0.107
MA0028.1	MA0028.1	0.968
MA0029.1	MA0029.1	0.617
MA0030.1	MA0030.1	0.0476
MA0031.1	MA0031.1	0.0257
MA0035.2	MA0035.2	4.46668e-5
MA0038.1	MA0038.1	0.201
MA0039.2	MA0039.2	0.248
MA0040.1	MA0040.1	0.0898
MA0041.1	MA0041.1	0.697
MA0042.1	MA0042.1	0.269
MA0043.1	MA0043.1	0.21
MA0046.1	MA0046.1	2.90481e-21
MA0047.2	MA0047.2	0.00189
MA0048.1	MA0048.1	0.465
MA0050.1	MA0050.1	2.87925e-5
MA0051.1	MA0051.1	4.26837e-4
MA0052.1	MA0052.1	7.17367e-4
MA0055.1	MA0055.1	0.272
MA0057.1	MA0057.1	0.271
MA0058.1	MA0058.1	0.874
MA0059.1	MA0059.1	0.586
MA0060.1	MA0060.1	7.66799e-7
MA0061.1	MA0061.1	0.267
MA0062.2	MA0062.2	0.2
MA0065.2	MA0065.2	8.18238e-5
MA0066.1	MA0066.1	0.0908
MA0067.1	MA0067.1	0.0944
MA0068.1	MA0068.1	0.268
MA0069.1	MA0069.1	0.933
MA0070.1	MA0070.1	0.487
MA0071.1	MA0071.1	0.0141
MA0072.1	MA0072.1	0.00727
MA0073.1	MA0073.1	0.954
MA0074.1	MA0074.1	0.782
MA0076.1	MA0076.1	0.849
MA0077.1	MA0077.1	0.171
MA0078.1	MA0078.1	0.708
MA0079.2	MA0079.2	0.0965
MA0080.2	MA0080.2	2.11135e-9
MA0081.1	MA0081.1	0.282
MA0083.1	MA0083.1	0.231
MA0084.1	MA0084.1	0.329
MA0087.1	MA0087.1	0.947
MA0088.1	MA0088.1	0.389
MA0090.1	MA0090.1	0.188
MA0091.1	MA0091.1	0.823
MA0092.1	MA0092.1	0.814
MA0093.1	MA0093.1	0.865
MA0099.2	MA0099.2	0.0127
MA0100.1	MA0100.1	0.562
MA0101.1	MA0101.1	0.451
MA0102.2	MA0102.2	0.239
MA0103.1	MA0103.1	0.00262
MA0104.2	MA0104.2	0.967
MA0105.1	MA0105.1	0.147
MA0106.1	MA0106.1	0.426
MA0107.1	MA0107.1	0.236
MA0108.2	MA0108.2	9.94962e-4
MA0111.1	MA0111.1	0.142
MA0112.2	MA0112.2	1.92679e-5
MA0113.1	MA0113.1	0.177
MA0114.1	MA0114.1	1.10185e-6
MA0115.1	MA0115.1	0.00474
MA0116.1	MA0116.1	0.00402
MA0117.1	MA0117.1	0.0914
MA0119.1	MA0119.1	0.0787
MA0122.1	MA0122.1	0.696
MA0124.1	MA0124.1	0.448
MA0125.1	MA0125.1	0.201
MA0131.1	MA0131.1	0.433
MA0135.1	MA0135.1	0.325
MA0136.1	MA0136.1	1.01077e-6
MA0137.2	MA0137.2	0.2
MA0138.2	MA0138.2	1.94066e-4
MA0139.1	MA0139.1	0.00184
MA0140.1	MA0140.1	4.91067e-5
MA0141.1	MA0141.1	1.33398e-4
MA0142.1	MA0142.1	0.521
MA0143.1	MA0143.1	0.109
MA0144.1	MA0144.1	0.39
MA0145.1	MA0145.1	0.243
MA0146.1	MA0146.1	0.977
MA0147.1	MA0147.1	0.99
MA0148.1	MA0148.1	4.49569e-5
MA0149.1	MA0149.1	0.00252
MA0150.1	MA0150.1	1.81337e-4
MA0152.1	MA0152.1	0.118
MA0153.1	MA0153.1	4.6595e-18
MA0154.1	MA0154.1	4.57562e-4
MA0155.1	MA0155.1	0.319
MA0156.1	MA0156.1	0.00182
MA0157.1	MA0157.1	0.263
MA0159.1	MA0159.1	0.00617
MA0160.1	MA0160.1	0.00191
MA0162.1	MA0162.1	0.992
MA0163.1	MA0163.1	0.291
MA0164.1	MA0164.1	0.688
MA0258.1	MA0258.1	2.42242e-4
MA0259.1	MA0259.1	0.888

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10577

Novel motif	Logo	P-value
1	1	0.0375
10	10	0.208
100	100	0.834
101	101	0.68
102	102	0.584
103	103	0.0189
104	104	0.55
105	105	0.765
106	106	0.0311
107	107	0.2
108	108	0.77
109	109	0.275
11	11	0.206
110	110	0.282
111	111	0.00935
112	112	0.0157
113	113	0.485
114	114	0.00765
115	115	0.722
116	116	0.922
117	117	0.284
118	118	0.358
119	119	0.0295
12	12	0.551
120	120	0.759
121	121	0.466
122	122	0.863
123	123	0.108
124	124	0.232
125	125	0.141
126	126	0.232
127	127	0.0639
128	128	0.0674
129	129	0.0899
13	13	0.796
130	130	0.189
131	131	0.919
132	132	0.502
133	133	0.71
134	134	0.769
135	135	0.736
136	136	0.55
137	137	0.766
138	138	0.688
139	139	0.00175
14	14	0.275
140	140	0.105
141	141	0.388
142	142	0.81
143	143	0.584
144	144	0.531
145	145	0.308
146	146	0.426
147	147	0.334
148	148	0.16
149	149	0.511
15	15	0.0534
150	150	0.702
151	151	0.0112
152	152	0.48
153	153	0.142
154	154	0.647
155	155	0.784
156	156	4.74515e-4
157	157	0.173
158	158	0.16
159	159	0.0592
160	160	0.921
161	161	0.288
162	162	0.822
163	163	0.0431
164	164	0.25
165	165	0.18
166	166	0.157
167	167	0.313
168	168	0.728
169	169	0.183
17	17	0.171
18	18	0.222
19	19	0.267
2	2	0.645
20	20	0.902
21	21	0.802
22	22	0.64
23	23	0.217
24	24	0.79
25	25	0.232
26	26	0.664
27	27	0.513
28	28	0.192
29	29	0.286
3	3	0.158
30	30	0.669
31	31	0.379
32	32	0.412
33	33	0.632
34	34	0.966
35	35	0.0313
36	36	0.165
37	37	0.189
38	38	0.345
39	39	0.796
4	4	0.49
40	40	0.321
41	41	0.507
42	42	0.398
43	43	0.114
44	44	0.0628
45	45	0.846
46	46	0.292
47	47	0.122
48	48	0.13
49	49	0.062
5	5	0.118
50	50	0.501
51	51	0.6
52	52	0.438
53	53	0.751
54	54	0.397
55	55	0.824
56	56	0.389
57	57	0.463
58	58	0.217
59	59	0.433
6	6	0.471
60	60	0.19
61	61	0.451
62	62	0.0588
63	63	0.354
64	64	0.408
65	65	0.229
66	66	0.491
67	67	0.731
68	68	0.00457
69	69	0.47
7	7	0.261
70	70	0.00304
71	71	0.251
72	72	0.465
73	73	0.554
74	74	0.413
75	75	0.0782
76	76	0.892
77	77	0.272
78	78	0.569
79	79	0.764
8	8	0.0966
80	80	0.0639
81	81	0.435
82	82	0.113
83	83	0.492
84	84	0.54
85	85	0.019
86	86	0.758
87	87	0.625
88	88	0.891
89	89	0.511
9	9	0.834
90	90	0.028
91	91	0.652
92	92	0.114
93	93	0.364
94	94	0.677
95	95	0.335
96	96	0.243
97	97	0.701
98	98	0.208
99	99	0.95

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10577

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011342 mouse forelimb- embryo E14 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002102 (forelimb)
0000479 (tissue)
0000026 (appendage)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0004708 (paired limb/fin)
0002101 (limb)
0004710 (pectoral appendage)
0010317 (germ layer / neural crest derived structure)
0010707 (appendage girdle complex)
0000153 (anterior region of body)
0010708 (pectoral complex)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000296 (mouse embryonic day 14 sample)
0011342 (mouse forelimb- embryo E14 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005417 (forelimb bud)
UBERON:0005733 (limb field)
UBERON:0005732 (limb/fin field)
UBERON:0005729 (forelimb/pectoral fin field)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008829
+|DRA_sample_Accession=CAGE@SAMD00005821
+|accession_numbers=CAGE;DRX008966;DRR009840;DRZ001265;DRZ002648;DRZ012615;DRZ013998
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002102,UBERON:0000479,UBERON:0000026,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0004708,UBERON:0002101,UBERON:0004710,UBERON:0010317,UBERON:0010707,UBERON:0000153,UBERON:0010708
 |ancestors_in_cell_lineage_facet=
@@ Line 8: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr12:34642510..34642530,+!p1@Twist1!2.13!405.73!Twist1;;chr2:74513125..74513143,+!p1@Hoxd12!1.71!49.98!Hoxd12;;chr6:52190467..52190500,-!p1@Hoxa10!1.68!46.69!Hoxa10;;chr1:165243591..165243625,-!p2@Prrx1!1.67!68.61!Prrx1;;chr1:136186574..136186592,+!p1@Myog!1.57!35.95!Myog;;chr3:99057269..99057306,+!p1@Tbx15!1.56!42.96!Tbx15;;chr8:59799772..59799789,+!p1@Hand2!1.50!86.36!Hand2;;chr1:140739014..140739032,-!p1@Lhx9!1.48!36.82!Lhx9;;chr6:52184901..52184959,-!p2@Hoxa10!1.46!28.06!Hoxa10;;chr7:53631837..53631850,+!p1@Myod1!1.45!26.96!Myod1;;chr12:37835120..37835133,+!p2@Meox2!1.42!35.51!Meox2;;chr12:74147689..74147711,-!p1@Six1!1.40!52.17!Six1;;chr1:165243379..165243402,-!p3@Prrx1!1.34!30.91!Prrx1;;chr6:52176164..52176195,-!p1@Hoxa9!1.34!25.87!Hoxa9;;chr5:38215819..38215823,-!p1@Msx1!1.32!51.51!Msx1;;chr12:37835141..37835194,+!p1@Meox2!1.30!58.31!Meox2;;chr9:87626083..87626108,-!p1@Tbx18!1.29!40.33!Tbx18;;chr13:53568104..53568156,-!p1@Msx2!1.29!26.96!Msx2;;chr13:40829137..40829205,-!p1@Tfap2a!1.28!20.39!Tfap2a;;chr6:52195795..52195825,-!p1@Hoxa11!1.27!17.54!Hoxa11;;chr16:25801993..25802014,+!p1@Trp63!1.26!17.32!Trp63;;chr3:66785857..66785873,-!p1@Shox2!1.26!17.10!Shox2;;chr19:25746898..25746910,+!p1@Dmrt2!1.25!24.77!Dmrt2;;chr10:12810631..12810649,+!p1@Plagl1!1.23!412.31!Plagl1;;chr15:102087737..102087801,-!p3@Rarg!1.22!25.65!Rarg;;chr4:135129538..135129558,-!p1@Grhl3!1.22!23.67!Grhl3;;chr6:52195763..52195792,-!p2@Hoxa11!1.22!15.56!Hoxa11;;chr13:72766250..72766273,+!p1@Irx2!1.21!23.45!Irx2;;chr5:120285144..120285160,+!p1@Tbx5!1.17!13.81!Tbx5;;chr2:74520048..74520064,+!p1@Hoxd11!1.17!13.81!Hoxd11;;chr11:101755669..101755686,-!p1@Meox1!1.14!23.02!Meox1;;chr11:121380640..121380655,-!p1@Zfp750!1.12!20.39!Zfp750;;chr7:144505957..144505972,-!p2@Ebf3!1.11!14.69!Ebf3;;chr14:56443806..56443848,+!p1@Nfatc4!1.10!23.67!Nfatc4;;chr13:72101178..72101203,-!p1@Irx1!1.10!17.97!Irx1;;chr6:52210774..52210787,-!p1@Hoxa13!1.10!11.62!Hoxa13;;chr15:76287876..76287894,+!p1@Scx!1.09!61.59!Scx;;chr18:7004715..7004731,-!p1@Mkx!1.08!26.52!Mkx;;chr2:120365588..120365602,-!p2@Zfp106!1.07!17.97!Zfp106;;chr13:83643159..83643226,+!p3@Mef2c!1.07!10.74!Mef2c;;chr15:35225845..35225867,+!p1@Osr2!1.06!26.52!Osr2;;chr10:126778916..126778974,-!p1@Gli1!1.06!23.67!Gli1;;chr17:86087592..86087615,-!p1@Six2!1.06!10.52!Six2;;chr12:37835203..37835218,+!p3@Meox2!1.05!12.27!Meox2;;chr12:34642682..34642753,+!p2@Twist1!1.04!26.52!Twist1;;chr6:6832076..6832092,-!p1@Dlx5!1.04!11.84!Dlx5;;chr12:28027561..28027591,-!p1@Sox11!1.03!64.01!Sox11;;chr12:3891810..3891829,+!p2@Dnmt3a!1.03!15.12!Dnmt3a;;chr12:37835248..37835260,+!p4@Meox2!1.03!9.64!Meox2;;chr2:30700788..30700824,+!p2@Prrx2!1.02!14.47!Prrx2;;chr18:80909801..80909819,-!p1@Nfatc1!1.01!55.02!Nfatc1;;chr3:99057256..99057268,+!p3@Tbx15!1.01!9.21!Tbx15;;chr12:9581262..9581282,+!p1@Osr1!0.99!108.72!Osr1;;chr13:72766279..72766296,+!p2@Irx2!0.99!13.15!Irx2;;chr13:72101161..72101177,-!p2@Irx1!0.99!12.27!Irx1;;chr10:119914001..119914078,-!p4@Hmga2!0.99!12.06!Hmga2;;chr6:52190668..52190682,-!p3@Hoxa10!0.99!8.77!Hoxa10;;chr1:93698030..93698064,+!p1@Twist2!0.98!17.54!Twist2;;chr2:38206744..38206766,+!p1@Lhx2!0.98!10.52!Lhx2;;chr2:74506264..74506286,+!p1@Hoxd13!0.98!8.55!Hoxd13;;chr10:119913278..119913298,-!p2@Hmga2!0.97!19.07!Hmga2;;chr19:59533221..59533271,+!p1@Emx2!0.96!10.08!Emx2;;chr10:119913310..119913366,-!p1@Hmga2!0.95!63.35!Hmga2;;chr1:93698068..93698085,+!p2@Twist2!0.95!9.43!Twist2;;chr2:74520343..74520383,+!p4@Hoxd11!0.95!7.89!Hoxd11;;chr10:119913546..119913583,-!p3@Hmga2!0.94!16.44!Hmga2;;chr11:94981424..94981439,+!p1@Dlx3!0.94!8.77!Dlx3;;chr6:52210816..52210831,-!p2@Hoxa13!0.94!7.67!Hoxa13;;chr9:71743854..71743909,-!p1@Tcf12!0.93!62.25!Tcf12;;chr14:67853425..67853454,+!p1@Ebf2!0.93!10.96!Ebf2;;chr10:106923133..106923146,-!p1@Myf5!0.93!7.45!Myf5;;chr7:144506077..144506128,-!p1@Ebf3!0.92!17.54!Ebf3;;chr1:19199236..19199258,+!p1@Tfap2b!0.92!7.23!Tfap2b;;chr7:6649134..6649167,-!p1@Zim1!0.91!40.33!Zim1;;chr2:30700881..30700916,+!p1@Prrx2!0.91!13.81!Prrx2;;chr7:144505980..144506010,-!p3@Ebf3!0.91!8.77!Ebf3;;chr1:169528720..169528749,+!p6@Rxrg!0.90!7.01!Rxrg;;chr2:30700857..30700873,+!p3@Prrx2!0.89!9.43!Prrx2;;chr6:6831950..6831985,-!p2@Dlx5!0.89!7.45!Dlx5;;chr1:165243653..165243664,-!p4@Prrx1!0.88!9.43!Prrx1;;chr3:107398056..107398082,+!p1@Alx3!0.88!6.58!Alx3;;chr15:102751603..102751630,+!p1@Hoxc13!0.88!6.58!Hoxc13;;chr1:165243792..165243808,-!p1@Prrx1!0.87!23.89!Prrx1;;chr14:67853457..67853482,+!p2@Ebf2!0.86!8.99!Ebf2;;chr8:94881733..94881790,+!p1@Irx5!0.85!12.49!Irx5;;chr12:57796615..57796687,+!p1@Pax9!0.85!6.14!Pax9;;chr11:121380594..121380609,-!p2@Zfp750!0.84!10.52!Zfp750;;chr12:3891753..3891801,+!p4@Dnmt3a!0.84!10.08!Dnmt3a;;chr2:38206580..38206600,+!p2@Lhx2!0.84!7.45!Lhx2;;chr1:136186545..136186554,+!p2@Myog!0.84!5.92!Myog;;chr7:53631818..53631829,+!p2@Myod1!0.83!5.70!Myod1;;chr6:6831928..6831949,-!p3@Dlx5!0.83!5.70!Dlx5;;chr9:31720843..31720888,-!p1@Barx2!0.82!6.36!Barx2;;chr14:56443781..56443800,+!p3@Nfatc4!0.81!7.23!Nfatc4;;chr7:123182248..123182264,-!p3@Sox6!0.81!6.58!Sox6;;chr5:42155788..42155800,-!p1@Nkx3-2!0.81!5.48!Nkx3-2;;chr9:43013917..43013968,-!p1@Pou2f3!0.81!5.48!Pou2f3;;chrX:55283799..55283813,+!p1@Zic3!0.81!5.48!Zic3;;chr2:74513064..74513089,+!p2@Hoxd12!0.81!5.48!Hoxd12;;chr13:15555670..15555771,+!p2@Gli3!0.80!14.25!Gli3;;chr6:14851440..14851497,+!p2@Foxp2!0.80!13.81!Foxp2;;chr5:120285161..120285176,+!p2@Tbx5!0.80!5.26!Tbx5;;chr7:56892217..56892221,-!p1@Dbx1!0.80!5.26!Dbx1;;chr1:19202352..19202354,+!p2@Tfap2b!0.80!5.26!Tfap2b;;chr17:25707623..25707639,-!p1@Sox8!0.79!24.11!Sox8;;chrX:98449898..98449913,+!p2@Foxo4!0.79!17.97!Foxo4;;chr13:31717548..31717596,+!p1@Foxf2!0.79!10.74!Foxf2;;chr4:134708451..134708469,+!p1@Runx3!0.79!9.64!Runx3;;chr13:72101141..72101158,-!p3@Irx1!0.79!6.58!Irx1;;chr1:14746065..14746079,-!p1@Msc!0.79!6.36!Msc;;chr6:52163319..52163342,-!p1@Hoxa3!0.78!7.67!Hoxa3;;chr7:19608891..19608895,-!p1@Foxa3!0.78!6.80!Foxa3;;chr2:147190749..147190769,+!p1@Pax1!0.78!5.04!Pax1;;chr3:66785181..66785199,-!p2@Shox2!0.78!5.04!Shox2;;chr12:109242266..109242295,-!p1@Bcl11b!0.77!45.37!Bcl11b;;chr3:99044284..99044308,+!p4@Tbx15!0.77!4.82!Tbx15;;chr9:87625971..87625992,-!p2@Tbx18!0.77!4.82!Tbx18;;chr13:31898729..31898761,+!p1@Foxc1!0.76!12.49!Foxc1;;chr15:102087880..102087927,-!p2@Rarg!0.75!11.40!Rarg;;chr1:93698095..93698113,+!p3@Twist2!0.75!5.70!Twist2;;chr8:94881872..94881887,+!p2@Irx5!0.75!5.04!Irx5;;chr1:19199095..19199114,+!p5@Tfap2b!0.75!4.60!Tfap2b;;chr1:19199221..19199234,+!p6@Tfap2b!0.75!4.60!Tfap2b;;chr2:167363692..167363710,+!p1@Snai1!0.74!60.72!Snai1;;chr15:50720601..50720630,-!p2@Trps1!0.74!11.62!Trps1;;chr8:111227493..111227517,+!p@chr8:111227493..111227517,+!0.74!8.33!Zfhx3;;chr2:71384802..71384815,-!p1@Dlx2!0.74!5.70!Dlx2;;chr17:44951553..44951586,-!p2@Runx2!0.74!5.04!Runx2;;chr11:112643496..112643562,+!p1@Sox9!0.73!183.69!Sox9;;chr7:17647736..17647772,-!p1@Hif3a!0.73!16.88!Hif3a;;chr11:44430877..44430899,+!p6@Ebf1!0.73!5.70!Ebf1;;chr14:67853632..67853674,+!p3@Ebf2!0.73!5.48!Ebf2;;chr13:40825465..40825469,-!p2@Tfap2a!0.73!4.38!Tfap2a;;chr6:52195747..52195762,-!p3@Hoxa11!0.73!4.38!Hoxa11;;chr19:59533429..59533470,+!p4@Emx2!0.73!4.38!Emx2;;chr12:9581284..9581303,+!p2@Osr1!0.72!8.77!Osr1;;chr13:31898767..31898785,+!p4@Foxc1!0.72!5.26!Foxc1;;chr11:74981654..74981658,-!p1@Hic1!0.71!18.41!Hic1;;chr3:5218629..5218684,+!p1@Zfhx4!0.71!14.69!Zfhx4;;chr8:111227354..111227401,+!p@chr8:111227354..111227401,+!0.71!5.70!Zfhx3;;chr13:83643232..83643254,+!p5@Mef2c!0.71!4.16!Mef2c;;chr2:74529970..74529997,+!p1@Hoxd10!0.71!4.16!Hoxd10;;chr6:52184880..52184893,-!p6@Hoxa10!0.71!4.16!Hoxa10;;chr7:52471143..52471186,+!p1@Tead2!0.70!48.44!Tead2;;chr1:165243638..165243649,-!p5@Prrx1!0.70!5.04!Prrx1;;chr4:135129447..135129467,-!p2@Grhl3!0.70!5.04!Grhl3;;chr4:154010409..154010466,-!p2@Prdm16!0.69!10.08!Prdm16;;chr16:18587076..18587106,-!p1@Tbx1!0.69!5.92!Tbx1;;chr6:52190858..52190873,-!p4@Hoxa10!0.69!3.95!Hoxa10;;chr5:120285130..120285141,+!p3@Tbx5!0.69!3.95!Tbx5;;chr6:30908793..30908815,-!p1@Klf14!0.69!3.95!Klf14;;chr16:14705925..14705951,+!p1@Snai2!0.68!30.03!Snai2;;chrX:45245679..45245702,-!p1@Smarca1!0.68!19.29!Smarca1;;chr7:19679964..19679982,+!p1@Six5!0.68!12.06!Six5;;chrX:45245644..45245666,-!p2@Smarca1!0.67!13.37!Smarca1;;chr11:44430989..44431015,+!p4@Ebf1!0.67!7.01!Ebf1;;chr8:111227455..111227464,+!p@chr8:111227455..111227464,+!0.67!4.82!Zfhx3;;chr13:40826150..40826167,-!p3@Tfap2a!0.67!4.16!Tfap2a;;chr15:95485240..95485257,-!p1@Dbx2!0.67!3.73!Dbx2;;chr2:172375081..172375105,+!p1@Tfap2c!0.67!3.73!Tfap2c;;chr2:30700830..30700843,+!p4@Prrx2!0.67!3.73!Prrx2;;chr2:33496386..33496410,-!p1@Lmx1b!0.67!3.73!Lmx1b;;chr4:84320893..84320910,-!p1@Bnc2!0.66!8.77!Bnc2;;chr3:5218516..5218544,+!p2@Zfhx4!0.66!5.70!Zfhx4;;chr2:70313168..70313184,+!p1@Sp5!0.66!5.70!Sp5;;chr12:9581317..9581333,+!p3@Osr1!0.66!5.70!Osr1;;chr5:24107676..24107722,-!p4@Smarcd3!0.66!5.04!Smarcd3;;chr4:3865501..3865548,-!p1@Plag1!0.65!20.39!Plag1;;chr15:50721942..50721987,-!p13@Trps1!0.65!4.16!Trps1;;chr13:53568191..53568219,-!p2@Msx2!0.65!3.51!Msx2;;chr13:53568081..53568094,-!p3@Msx2!0.65!3.51!Msx2;;chr2:74499300..74499309,-!p@chr2:74499300..74499309,-!0.65!3.51!Evx2;;chr4:139388835..139388867,-!p1@Pax7!0.65!3.51!Pax7;;chr1:19199119..19199134,+!p4@Tfap2b!0.65!3.51!Tfap2b;;chr11:21901608..21901634,-!p1@Otx1!0.65!3.51!Otx1;;chr5:42155277..42155281,-!p2@Nkx3-2!0.65!3.51!Nkx3-2;;chr6:52176144..52176161,-!p2@Hoxa9!0.65!3.51!Hoxa9;;chrX:55284180..55284195,+!p2@Zic3!0.65!3.51!Zic3;;chr17:48061584..48061601,-!p2@Foxp4!0.64!25.21!Foxp4;;chrX:48558950..48559016,-!p1@Mbnl3!0.64!12.06!Mbnl3;;chr17:28487603..28487626,-!p2@Tead3!0.64!7.89!Tead3;;chr4:13712228..13712267,+!p3@Runx1t1!0.64!6.36!Runx1t1;;chr11:23977742..23977794,+!p6@Bcl11a!0.64!4.38!Bcl11a;;chr17:37139472..37139514,+!p1@Zfp57!0.63!26.08!Zfp57;;chr1:120949949..120950000,-!p1@Gli2!0.63!16.44!Gli2;;chr8:111227518..111227550,+!p@chr8:111227518..111227550,+!0.63!6.14!Zfhx3;;chr17:44951431..44951445,-!p3@Runx2!0.63!3.29!Runx2;;chr19:46222859..46222876,-!p1@Pitx3!0.63!3.29!Pitx3;;chr3:66785201..66785226,-!p3@Shox2!0.63!3.29!Shox2;;chr2:74520075..74520087,+!p6@Hoxd11!0.63!3.29!Hoxd11;;chr12:37835219..37835230,+!p5@Meox2!0.63!3.29!Meox2;;chr1:169528823..169528860,+!p5@Rxrg!0.63!3.29!Rxrg;;chr2:147190725..147190747,+!p2@Pax1!0.63!3.29!Pax1;;chr1:19199079..19199092,+!p7@Tfap2b!0.63!3.29!Tfap2b;;chr3:130813200..130813252,+!p1@Lef1!0.62!16.44!Lef1;;chr14:22807216..22807231,-!p3@Zfp503!0.62!5.92!Zfp503;;chr14:56443698..56443726,+!p2@Nfatc4!0.61!6.36!Nfatc4;;chr15:102828658..102828678,+!p1@Hoxc6!0.61!3.07!Hoxc6;;chr19:59533595..59533628,+!p6@Emx2!0.61!3.07!Emx2;;chr1:19199151..19199170,+!p3@Tfap2b!0.61!3.07!Tfap2b;;chr16:95808192..95808202,-!p2@Erg!0.61!3.07!Erg;;chr3:99057677..99057730,+!p2@Tbx15!0.61!3.07!Tbx15;;chr2:73110004..73110016,+!p2@Sp9!0.61!3.07!Sp9;;chr14:22807083..22807104,-!p1@Zfp503!0.60!62.91!Zfp503;;chr14:22807107..22807119,-!p2@Zfp503!0.60!15.56!Zfp503;;chr11:23980664..23980706,+!p2@Bcl11a!0.60!15.34!Bcl11a;;chr13:15555496..15555544,+!p1@Gli3!0.60!12.06!Gli3;;chr2:74542918..74542971,+!p1@Hoxd8!0.60!4.82!Hoxd8;;chr13:15555428..15555440,+!p7@Gli3!0.60!3.51!Gli3;;chr15:102865131..102865151,+!p2@Hoxc4!0.60!3.51!Hoxc4;;chr6:72739185..72739232,-!p1@Tcf7l1!0.59!35.95!Tcf7l1;;chr16:14705961..14705978,+!p2@Snai2!0.59!16.00!Snai2;;chr19:7342725..7342784,+!p1@Rcor2!0.59!14.25!Rcor2;;chr2:156666727..156666753,+!p2@Tgif2!0.59!4.60!Tgif2;;chr19:5560600..5560617,-!p1@Ovol1!0.59!3.73!Ovol1;;chr11:121380611..121380625,-!p3@Zfp750!0.59!3.73!Zfp750;;chr19:5560570..5560582,-!p2@Ovol1!0.59!2.85!Ovol1;;chr16:25684232..25684285,+!p2@Trp63!0.59!2.85!Trp63;;chr13:40826961..40827001,-!p4@Tfap2a!0.59!2.85!Tfap2a;;chr15:102865088..102865107,+!p1@Hoxc4!0.58!3.95!Hoxc4;;chr13:15555555..15555574,+!p5@Gli3!0.58!3.95!Gli3;;chr11:23978353..23978379,+!p10@Bcl11a!0.58!3.51!Bcl11a;;chr6:52167459..52167492,-!p1@Hoxa7!0.58!3.51!Hoxa7;;chr9:106356211..106356242,+!p1@Pcbp4!0.57!65.10!Pcbp4;;chr3:30408603..30408668,-!p1@Mecom!0.57!7.23!Mecom;;chr15:102076652..102076679,-!p4@Rarg!0.57!5.48!Rarg;;chr13:31898496..31898519,+!p3@Foxc1!0.57!4.82!Foxc1;;chr3:130813736..130813752,+!p3@Lef1!0.57!4.16!Lef1;;chr2:168427252..168427273,-!p2@Nfatc2!0.57!3.51!Nfatc2;;chr4:82151274..82151290,-!p3@Nfib!0.56!53.48!Nfib;;chr13:15555035..15555073,+!p4@Gli3!0.56!8.33!Gli3;;chr3:30408674..30408716,-!p2@Mecom!0.56!4.82!Mecom;;chr3:30408384..30408431,-!p4@Mecom!0.56!3.51!Mecom;;chr6:144157924..144157955,-!p2@Sox5!0.56!3.51!Sox5;;chr6:144152648..144152680,-!p5@Sox5!0.56!2.63!Sox5;;chr2:74536026..74536039,+!p1@Hoxd9!0.56!2.63!Hoxd9;;chr14:67853682..67853702,+!p4@Ebf2!0.56!2.63!Ebf2;;chr15:102839948..102839975,+!p3@Hoxc6!0.56!2.63!Hoxc6;;chr15:102767247..102767265,+!p1@Hoxc12!0.56!2.63!Hoxc12;;chr19:59533163..59533185,+!p3@Emx2!0.56!2.63!Emx2;;chr18:14130694..14130697,-!p2@Zfp521!0.55!6.80!Zfp521;;chr11:44431016..44431045,+!p5@Ebf1!0.55!3.95!Ebf1;;chr1:120950197..120950215,-!p5@Gli2!0.55!3.73!Gli2;;chr2:152561980..152561997,+!p1@Id1!0.54!92.28!Id1;;chr1:120950098..120950132,-!p2@Gli2!0.54!6.58!Gli2;;chr8:123640063..123640077,+!p1@Foxc2!0.54!5.04!Foxc2;;chr4:13712168..13712218,+!p4@Runx1t1!0.54!4.60!Runx1t1;;chr6:52154414..52154462,-!p1@Hoxa5!0.54!3.73!Hoxa5;;chr18:14131020..14131033,-!p4@Zfp521!0.54!3.51!Zfp521;;chr6:72185232..72185272,-!p1@Atoh8!0.53!8.33!Atoh8;;chr13:31898637..31898653,+!p2@Foxc1!0.53!4.82!Foxc1;;chr18:69752912..69752928,+!p9@Tcf4!0.53!3.95!Tcf4;;chr6:128250380..128250442,-!p2@Tead4!0.53!3.29!Tead4;;chr6:70906450..70906454,+!p1@Foxi3!0.53!2.41!Foxi3;;chr6:6831986..6832007,-!p4@Dlx5!0.53!2.41!Dlx5;;chr6:14851377..14851396,+!p10@Foxp2!0.53!2.41!Foxp2;;chr6:14851403..14851422,+!p8@Foxp2!0.53!2.41!Foxp2;;chr2:74517742..74517758,+!p2@Hoxd11!0.53!2.41!Hoxd11;;chr9:87626109..87626120,-!p3@Tbx18!0.53!2.41!Tbx18;;chr19:59532915..59532940,+!p5@Emx2!0.53!2.41!Emx2;;chr1:19199064..19199075,+!p10@Tfap2b!0.53!2.41!Tfap2b;;chr15:102844431..102844445,+!p1@Hoxc5!0.53!2.41!Hoxc5;;chr11:96880072..96880079,+!p1@Sp6!0.53!2.41!Sp6;;chr2:133377954..133377973,+!p1@Bmp2!0.52!8.99!Bmp2;;chr1:179374784..179374800,+!p2@Zfp238!0.52!2.85!Zfp238;;chr4:82151178..82151262,-!p1@Nfib!0.51!118.80!Nfib;;chr18:14131126..14131211,-!p1@Zfp521!0.51!62.25!Zfp521;;chr13:96095150..96095184,+!p2@Zbed3!0.51!19.95!Zbed3;;chr11:99092233..99092273,-!p2@Smarce1!0.51!13.59!Smarce1;;chr8:90483459..90483475,-!p1@Zfp423!0.51!7.45!Zfp423;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!0.51!3.07!Pou3f3;;chr7:6683123..6683142,-!p1@Peg3!0.50!150.81!Peg3;;chr16:4559608..4559681,-!p1@Tfap4!0.50!23.23!Tfap4;;chr11:44431687..44431706,+!p2@Ebf1!0.50!12.93!Ebf1;;chr2:9800207..9800234,-!p1@Gata3!0.50!8.11!Gata3;;chr2:65683890..65683907,+!p1@Csrnp3!0.50!4.82!Csrnp3;;chr11:98789140..98789168,+!p5@Rara!0.50!3.95!Rara;;chr16:4594853..4594884,+!p3@Glis2!0.50!3.95!Glis2;;chr14:17407549..17407575,-!p3@Rarb!0.50!3.73!Rarb;;chr15:50720589..50720600,-!p12@Trps1!0.50!3.07!Trps1;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@@ Line 42: / Line 44: @@
 |is_a=EFO:0002091;;FF:0011342
 |is_obsolete=
-|library_ids=CNhs10577
+|library_id=CNhs10577
+|library_id_phase_based=2:CNhs10577
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;413
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;413
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/forelimb%252c%2520embryo%2520E14.CNhs10577.413-26A8.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/forelimb%252c%2520embryo%2520E14.CNhs10577.413-26A8.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/forelimb%252c%2520embryo%2520E14.CNhs10577.413-26A8.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/forelimb%252c%2520embryo%2520E14.CNhs10577.413-26A8.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/forelimb%252c%2520embryo%2520E14.CNhs10577.413-26A8.mm9.nobarcode.rdna.fa.gz
 |name=forelimb, embryo E14
 |namespace=FANTOM5
@@ Line 48: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10577,LSID653,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
 |repeat_enrich_byfamily=-0.074758879425622,0,0,0,0,0,-0.046733438096705,0,0,0,0,0.646758925983398,0,0,0,0,0,0,-0.191893350882575,0,0,0,0,0,0.0860734338295156,0,0,0,0,0,0,0.0430367169147578,-0.11852732398507,0,0,0,0,0,0.0101536582190847,0.0193797264334572,0.000974241535991904,0.610835482805632,0.0515182190403889,0,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0.157877097374896,0,0,0,0.115030142292021,0,-0.0209583735933314,0,0,0,0.0605420303870589,0.129244810999575,0.0613853409438282,0.0229421507790771,0,0.0417885722229298,0.0122397884496523,0.000533810078872987,0.0860734338295156,0,0,-0.14783611576212,-0.0105055339530752,-0.0788315948399074,0,0,0,0,0,0,-0.0927377001344191,-0.249706019137554,-0.133095979900642,0,0,0,0,0
@@ Line 85: / Line 97: @@
 |top_motifs=ZNF238:2.14080746963;ZNF384:1.62564447556;NANOG{mouse}:1.51330070519;SOX5:1.47267621688;CDC5L:1.39324124175;RREB1:1.37186509596;NKX2-3_NKX2-5:1.34581799947;MYBL2:1.332523418;HIF1A:1.3108880898;IKZF1:1.310211311;ATF6:1.29753939947;PATZ1:1.27618643872;TFCP2:1.25847982627;GFI1:1.18813992288;ZNF143:1.18767573527;TFAP2{A,C}:1.17966151804;NKX2-1,4:1.13527312889;HMGA1,2:1.12385449596;CDX1,2,4:1.11075394739;LEF1_TCF7_TCF7L1,2:1.08402054189;MAZ:1.06684715905;NFATC1..3:1.0461413341;TOPORS:1.04275029301;KLF4:1.02972971058;XCPE1{core}:1.00950563088;HES1:1.002959522;TEAD1:0.969752947093;PAX6:0.961798106954;SOX2:0.960761750984;STAT5{A,B}:0.950402545639;FOXP3:0.946256813391;EP300:0.933873854258;GFI1B:0.919237052687;TFAP4:0.905114945173;GATA4:0.899254135694;FOXL1:0.898122613752;SPZ1:0.896075231603;E2F1..5:0.868487325826;RXR{A,B,G}:0.843128088633;GCM1,2:0.834422810925;MZF1:0.832773028586;GLI1..3:0.805524768122;EN1,2:0.784085472584;VSX1,2:0.745426238181;NFY{A,B,C}:0.739701700237;IKZF2:0.737925998244;TAL1_TCF{3,4,12}:0.730061259513;ESR1:0.726999321243;PAX5:0.715449933072;HMX1:0.705536223969;GTF2I:0.704336906551;HIC1:0.698640060025;SOX{8,9,10}:0.694251300827;PDX1:0.68659525197;UFEwm:0.667023131713;TGIF1:0.663594764327;HOXA9_MEIS1:0.646490199947;SOX17:0.632064816541;NKX3-1:0.629189860244;NRF1:0.581457615642;ZNF148:0.579699773856;HOX{A4,D4}:0.564068827074;MTE{core}:0.543434653969;PAX1,9:0.516124834648;GTF2A1,2:0.507270477438;ATF2:0.500356056544;MTF1:0.48108548684;HSF1,2:0.478793167153;MEF2{A,B,C,D}:0.470297610453;PRDM1:0.449653257268;TLX1..3_NFIC{dimer}:0.429828954685;ALX4:0.407571672696;BREu{core}:0.395859879001;NANOG:0.386585181483;NHLH1,2:0.37606054809;SMAD1..7,9:0.373997958047;HBP1_HMGB_SSRP1_UBTF:0.370550592529;MED-1{core}:0.360522149691;TFDP1:0.348391536643;TFAP2B:0.346461593942;TBP:0.342737160219;FOXD3:0.336292438184;POU5F1:0.336084741273;SRF:0.316236133858;T:0.294819557242;EGR1..3:0.29157991345;SP1:0.262714550619;TP53:0.217971710736;ELK1,4_GABP{A,B1}:0.178686698637;PRRX1,2:0.173254771051;DBP:0.17187993913;STAT1,3:0.169085379378;ZIC1..3:0.154197675462;PITX1..3:0.153396032228;RBPJ:0.142174289652;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.139221228389;TLX2:0.127372090063;HOX{A5,B5}:0.125872661173;TEF:0.111639178912;ZNF423:0.102871598904;ZFP161:0.075781201665;NFE2L1:0.0574274039364;LHX3,4:0.0452880469443;TBX4,5:0.040490114076;NKX3-2:0.0165622737793;POU3F1..4:0.0156958011164;SPIB:0.00485860060279;POU2F1..3:0.00348935549367;ELF1,2,4:0.00338548120666;MYFfamily:0.00121930001118;FOXP1:-0.000441624758045;GZF1:-0.0195699770256;MYOD1:-0.0455304765189;ZBTB6:-0.056715594291;PAX4:-0.0593215196496;FOSL2:-0.0616072862762;MYB:-0.0662352606793;REST:-0.101300625749;DMAP1_NCOR{1,2}_SMARC:-0.102667011349;NKX6-1,2:-0.114670342578;FOS_FOS{B,L1}_JUN{B,D}:-0.120649109221;MAFB:-0.125282050459;NFKB1_REL_RELA:-0.125768486041;NR6A1:-0.128787380917;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.165019840436;CUX2:-0.167550904308;ALX1:-0.168470186104;RUNX1..3:-0.170727749113;RFX1:-0.175547796299;AHR_ARNT_ARNT2:-0.198365042027;HAND1,2:-0.211172265851;RXRA_VDR{dimer}:-0.220831210386;EVI1:-0.234412718817;SNAI1..3:-0.24157327859;SPI1:-0.253094120026;ADNP_IRX_SIX_ZHX:-0.279539625683;HLF:-0.283588163212;FOXA2:-0.302549382116;AIRE:-0.329315973663;RFX2..5_RFXANK_RFXAP:-0.346317553252;ZEB1:-0.347596874428;ARID5B:-0.371576836227;JUN:-0.375707895116;SREBF1,2:-0.386325730085;POU6F1:-0.39576110536;ETS1,2:-0.397169161536;YY1:-0.402390923355;ZBTB16:-0.407039838573;NKX2-2,8:-0.414282446402;PBX1:-0.42046450977;PAX8:-0.440826831089;RORA:-0.462454150807;FOXN1:-0.465726372269;ONECUT1,2:-0.473314174927;BACH2:-0.476063823848;ATF4:-0.50781583691;CRX:-0.517736199691;PAX2:-0.519154523949;IRF7:-0.521582356271;POU1F1:-0.525177130081;ATF5_CREB3:-0.541500694246;HNF4A_NR2F1,2:-0.544287081271;OCT4_SOX2{dimer}:-0.551687345082;FOXO1,3,4:-0.628146320157;PPARG:-0.640271360995;EBF1:-0.645574161198;FOX{I1,J2}:-0.651249936498;HNF1A:-0.657264855234;BPTF:-0.729094655387;AR:-0.748293249827;LMO2:-0.76499999232;CREB1:-0.78689220377;bHLH_family:-0.845787836993;IRF1,2:-0.850680097488;NFIX:-0.852947953044;GATA6:-0.879361692296;NR3C1:-0.929595498285;FOX{F1,F2,J1}:-0.940414080756;FOXM1:-0.942730243422;NFE2L2:-0.973209147165;NFE2:-1.02580409011;NR5A1,2:-1.04490490152;CEBPA,B_DDIT3:-1.08566365722;NR1H4:-1.08671786922;FOXQ1:-1.12205765081;STAT2,4,6:-1.12228820853;NFIL3:-1.26224107521;ESRRA:-1.36261903642;FOX{D1,D2}:-1.42146375644
 |xref=
-}} {{DRAAccessionNumbers
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:413-26A8;search_select_hide=table117:413-26A8
-|DRA_sample_Accession=CAGE@DRS008829
-|accession_numbers=DRX008966;DRR009840;DRZ001265;DRZ002648;CAGE
-|library_id=CNhs10577
 }}

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From FANTOM5_SSTAR

Latest revision as of 19:16, 4 June 2020

CNhs10577

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0