FF:503-18G5: Difference between revisions

Latest revision as of 19:17, 4 June 2020

Name:	testis, embryo E18
Species:	Mouse (Mus musculus)
Library ID:	CNhs11027
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	testis
dev stage	18 days embryo
sex	male
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005973

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11027		CAGE		DRX009106		DRR009980

Accession ID Mm9

Library id		BAM		CTSS
CNhs11027		DRZ001405		DRZ002788

Accession ID Mm10

Library id		BAM		CTSS
CNhs11027		DRZ012755		DRZ014138

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs11027

0	0
1	0
10	0
100	0
1000	-0.00141
1001	0.0615
1002	0.813
1003	0.25
1004	0
1005	0
1006	0
1007	0.036
1008	0
1009	0.066
101	0.0691
1010	0
1011	0.0186
1012	0.126
1013	-0.139
1014	0.474
1015	0.137
1016	0.321
1017	0
1018	0
1019	0
102	0
1020	0
1021	0
1022	0.0678
1023	0
1024	-0.0221
1025	0.0173
1026	0
1027	0
1028	0
1029	0.225
103	0.266
1030	0
1031	0.427
1032	-0.0213
1033	0.0013
1034	0
1035	0.126
1036	0.0511
1037	0
1038	0
1039	-0.0443
104	0
1040	0.0421
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11027

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00167
MA0003.1	MA0003.1	0.972
MA0004.1	MA0004.1	0.472
MA0006.1	MA0006.1	0.0949
MA0007.1	MA0007.1	0.818
MA0009.1	MA0009.1	0.527
MA0014.1	MA0014.1	0.856
MA0017.1	MA0017.1	4.87936e-4
MA0018.2	MA0018.2	0.102
MA0019.1	MA0019.1	0.403
MA0024.1	MA0024.1	1.84804e-6
MA0025.1	MA0025.1	0.425
MA0027.1	MA0027.1	0.956
MA0028.1	MA0028.1	0.157
MA0029.1	MA0029.1	0.794
MA0030.1	MA0030.1	0.0272
MA0031.1	MA0031.1	0.0334
MA0035.2	MA0035.2	0.25
MA0038.1	MA0038.1	0.0416
MA0039.2	MA0039.2	0.19
MA0040.1	MA0040.1	0.0623
MA0041.1	MA0041.1	0.158
MA0042.1	MA0042.1	0.378
MA0043.1	MA0043.1	0.737
MA0046.1	MA0046.1	3.78685e-24
MA0047.2	MA0047.2	0.00787
MA0048.1	MA0048.1	0.0108
MA0050.1	MA0050.1	0.0796
MA0051.1	MA0051.1	0.0329
MA0052.1	MA0052.1	3.36375e-4
MA0055.1	MA0055.1	0.00511
MA0057.1	MA0057.1	0.22
MA0058.1	MA0058.1	0.238
MA0059.1	MA0059.1	0.162
MA0060.1	MA0060.1	1.42891e-7
MA0061.1	MA0061.1	0.33
MA0062.2	MA0062.2	0.977
MA0065.2	MA0065.2	0.00463
MA0066.1	MA0066.1	0.0772
MA0067.1	MA0067.1	0.587
MA0068.1	MA0068.1	0.59
MA0069.1	MA0069.1	0.78
MA0070.1	MA0070.1	0.965
MA0071.1	MA0071.1	0.788
MA0072.1	MA0072.1	0.254
MA0073.1	MA0073.1	0.229
MA0074.1	MA0074.1	0.72
MA0076.1	MA0076.1	0.131
MA0077.1	MA0077.1	0.454
MA0078.1	MA0078.1	0.0444
MA0079.2	MA0079.2	0.487
MA0080.2	MA0080.2	1.23917e-6
MA0081.1	MA0081.1	0.301
MA0083.1	MA0083.1	0.181
MA0084.1	MA0084.1	0.397
MA0087.1	MA0087.1	0.248
MA0088.1	MA0088.1	0.754
MA0090.1	MA0090.1	0.647
MA0091.1	MA0091.1	0.993
MA0092.1	MA0092.1	0.574
MA0093.1	MA0093.1	0.356
MA0099.2	MA0099.2	3.10009e-6
MA0100.1	MA0100.1	0.715
MA0101.1	MA0101.1	0.47
MA0102.2	MA0102.2	0.803
MA0103.1	MA0103.1	2.80116e-4
MA0104.2	MA0104.2	0.0329
MA0105.1	MA0105.1	0.19
MA0106.1	MA0106.1	0.521
MA0107.1	MA0107.1	0.261
MA0108.2	MA0108.2	1.59278e-4
MA0111.1	MA0111.1	0.283
MA0112.2	MA0112.2	0.0356
MA0113.1	MA0113.1	0.419
MA0114.1	MA0114.1	7.87553e-4
MA0115.1	MA0115.1	0.103
MA0116.1	MA0116.1	0.404
MA0117.1	MA0117.1	0.13
MA0119.1	MA0119.1	0.97
MA0122.1	MA0122.1	0.623
MA0124.1	MA0124.1	0.127
MA0125.1	MA0125.1	0.469
MA0131.1	MA0131.1	0.559
MA0135.1	MA0135.1	0.104
MA0136.1	MA0136.1	1.16699e-5
MA0137.2	MA0137.2	0.246
MA0138.2	MA0138.2	0.0178
MA0139.1	MA0139.1	0.867
MA0140.1	MA0140.1	0.779
MA0141.1	MA0141.1	0.0175
MA0142.1	MA0142.1	0.0134
MA0143.1	MA0143.1	0.852
MA0144.1	MA0144.1	0.16
MA0145.1	MA0145.1	0.00995
MA0146.1	MA0146.1	0.416
MA0147.1	MA0147.1	0.0488
MA0148.1	MA0148.1	0.00141
MA0149.1	MA0149.1	0.264
MA0150.1	MA0150.1	1.21479e-4
MA0152.1	MA0152.1	0.0239
MA0153.1	MA0153.1	4.0512e-16
MA0154.1	MA0154.1	0.0783
MA0155.1	MA0155.1	0.971
MA0156.1	MA0156.1	0.0321
MA0157.1	MA0157.1	0.0915
MA0159.1	MA0159.1	2.27186e-5
MA0160.1	MA0160.1	0.729
MA0162.1	MA0162.1	0.0816
MA0163.1	MA0163.1	0.327
MA0164.1	MA0164.1	0.731
MA0258.1	MA0258.1	0.0018
MA0259.1	MA0259.1	0.0341

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11027

Novel motif	Logo	P-value
1	1	0.275
10	10	0.922
100	100	0.527
101	101	0.71
102	102	0.375
103	103	0.641
104	104	0.928
105	105	0.226
106	106	1.24604e-4
107	107	0.0108
108	108	0.714
109	109	0.758
11	11	0.426
110	110	0.595
111	111	0.831
112	112	0.941
113	113	0.365
114	114	0.0465
115	115	0.503
116	116	0.27
117	117	0.525
118	118	0.465
119	119	0.22
12	12	0.427
120	120	0.364
121	121	0.946
122	122	0.955
123	123	0.235
124	124	0.328
125	125	0.261
126	126	0.811
127	127	0.412
128	128	6.17341e-4
129	129	0.19
13	13	0.77
130	130	0.391
131	131	0.59
132	132	0.788
133	133	0.537
134	134	0.988
135	135	0.178
136	136	0.227
137	137	0.879
138	138	0.635
139	139	0.201
14	14	0.127
140	140	0.741
141	141	0.0983
142	142	0.145
143	143	0.145
144	144	0.0138
145	145	0.726
146	146	0.208
147	147	0.612
148	148	0.214
149	149	0.457
15	15	0.127
150	150	0.979
151	151	0.0576
152	152	0.241
153	153	0.773
154	154	0.564
155	155	0.644
156	156	0.716
157	157	0.534
158	158	0.327
159	159	0.663
160	160	0.562
161	161	0.657
162	162	0.431
163	163	0.0415
164	164	0.597
165	165	0.0427
166	166	0.652
167	167	0.929
168	168	0.226
169	169	0.843
17	17	0.167
18	18	0.201
19	19	0.68
2	2	0.238
20	20	0.6
21	21	0.425
22	22	0.891
23	23	0.111
24	24	0.998
25	25	0.41
26	26	0.791
27	27	0.248
28	28	0.408
29	29	0.192
3	3	0.434
30	30	0.594
31	31	0.214
32	32	0.734
33	33	0.744
34	34	0.879
35	35	0.103
36	36	0.45
37	37	0.328
38	38	0.676
39	39	0.937
4	4	0.622
40	40	0.576
41	41	0.0129
42	42	0.705
43	43	0.401
44	44	0.59
45	45	0.186
46	46	0.15
47	47	0.676
48	48	0.409
49	49	0.207
5	5	0.136
50	50	0.781
51	51	0.844
52	52	0.0934
53	53	0.703
54	54	0.338
55	55	0.199
56	56	0.313
57	57	0.767
58	58	0.385
59	59	0.187
6	6	0.924
60	60	0.0283
61	61	0.841
62	62	0.124
63	63	0.309
64	64	0.836
65	65	0.262
66	66	0.771
67	67	0.192
68	68	0.00212
69	69	0.256
7	7	0.618
70	70	0.0113
71	71	0.469
72	72	0.543
73	73	0.281
74	74	0.701
75	75	0.851
76	76	0.489
77	77	0.521
78	78	0.429
79	79	0.85
8	8	0.264
80	80	0.0161
81	81	0.422
82	82	0.874
83	83	0.771
84	84	0.252
85	85	0.0103
86	86	0.0934
87	87	0.137
88	88	0.7
89	89	0.0266
9	9	0.745
90	90	0.545
91	91	0.481
92	92	0.277
93	93	0.293
94	94	0.494
95	95	0.909
96	96	0.678
97	97	0.949
98	98	0.123
99	99	0.88

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11027

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011377 mouse testis- embryo E18 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000473 (testis)
0000991 (gonad)
0000479 (tissue)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003135 (male reproductive organ)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0003101 (male organism)
0000079 (male reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000302 (mouse embryonic day 18 sample)
0011377 (mouse testis- embryo E18 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0009117 (indifferent gonad)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005564 (gonad primordium)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000079,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000473,UBERON:0000479,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0000990,UBERON:0000991,UBERON:0001048,UBERON:0001062,UBERON:0002050,UBERON:0002323,UBERON:0002532,UBERON:0002553,UBERON:0003101,UBERON:0003133,UBERON:0003135,UBERON:0004120,UBERON:0004176,UBERON:0004458,UBERON:0005156,UBERON:0005423,UBERON:0005564,UBERON:0009117,UBERON:0009196
+|DRA_sample_Accession=CAGE@SAMD00005973
+|accession_numbers=CAGE;DRX009106;DRR009980;DRZ001405;DRZ002788;DRZ012755;DRZ014138
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000473,UBERON:0000991,UBERON:0000479,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003135,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0003101,UBERON:0000079
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000103,FF:0000001,FF:0000999,FF:0000292,FF:0000004,FF:0000302,FF:0011377
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:140739014..140739032,-!p1@Lhx9!2.31!252.42!Lhx9;;chr10:22539932..22539956,-!p1@Tcf21!2.09!313.58!Tcf21;;chr2:38570011..38570034,-!p1@Nr5a1!2.09!121.99!Nr5a1;;chr14:63864056..63864102,-!p1@Gata4!1.94!146.32!Gata4;;chrX:90531838..90531861,+!p1@Arx!1.94!107.96!Arx;;chr15:102828658..102828678,+!p1@Hoxc6!1.64!42.91!Hoxc6;;chr7:147129712..147129774,+!p1@Utf1!1.46!27.71!Utf1;;chr1:168168817..168168850,-!p2@Mael!1.45!27.37!Mael;;chr1:168168856..168168893,-!p1@Mael!1.45!27.20!Mael;;chr2:74529970..74529997,+!p1@Hoxd10!1.40!24.33!Hoxd10;;chr2:104966766..104966786,+!p1@Wt1!1.36!34.47!Wt1;;chr2:74549968..74549996,+!p1@Hoxd3!1.35!26.53!Hoxd3;;chr10:126778916..126778974,-!p1@Gli1!1.33!44.60!Gli1;;chr19:25580110..25580163,+!p1@Dmrt1!1.28!18.08!Dmrt1;;chr2:152758901..152758925,-!p1@Foxs1!1.27!77.55!Foxs1;;chr15:35225845..35225867,+!p1@Osr2!1.27!44.10!Osr2;;chr17:25707623..25707639,-!p1@Sox8!1.26!71.81!Sox8;;chr12:34642510..34642530,+!p1@Twist1!1.25!53.05!Twist1;;chr2:74536026..74536039,+!p1@Hoxd9!1.23!16.05!Hoxd9;;chrX:83437105..83437121,+!p1@Nr0b1!1.18!14.19!Nr0b1;;chr2:104966874..104966907,+!p2@Wt1!1.14!12.67!Wt1;;chr2:152758938..152758954,-!p2@Foxs1!1.07!14.87!Foxs1;;chrX:45245679..45245702,-!p1@Smarca1!1.05!46.29!Smarca1;;chr14:63890459..63890484,-!p4@Gata4!1.05!10.31!Gata4;;chr11:85646303..85646329,+!p1@Tbx2!1.02!63.19!Tbx2;;chr19:25580226..25580261,+!p2@Dmrt1!1.01!9.12!Dmrt1;;chr2:74550015..74550057,+!p2@Hoxd3!0.99!8.79!Hoxd3;;chr14:63864337..63864381,-!p6@Gata4!0.98!8.62!Gata4;;chr15:75578748..75578752,-!p1@Mafa!0.97!8.28!Mafa;;chr5:31271028..31271040,+!p1@Tcf23!0.97!8.28!Tcf23;;chr2:169458799..169458832,+!p5@Tshz2!0.94!13.01!Tshz2;;chr14:63890491..63890516,-!p2@Gata4!0.94!7.77!Gata4;;chr14:63890691..63890718,-!p8@Gata4!0.93!7.43!Gata4;;chrX:45245644..45245666,-!p2@Smarca1!0.92!24.16!Smarca1;;chr10:12810631..12810649,+!p1@Plagl1!0.91!196.33!Plagl1;;chr15:81633203..81633215,+!p3@Tef!0.91!11.32!Tef;;chr13:83712735..83712761,+!p9@Mef2c!0.91!7.10!Mef2c;;chr2:74529998..74530020,+!p2@Hoxd10!0.91!7.10!Hoxd10;;chr12:77278238..77278252,-!p1@Esr2!0.90!6.93!Esr2;;chr7:77511403..77511450,-!p3@Nr2f2!0.89!14.70!Nr2f2;;chr2:169458838..169458859,+!p4@Tshz2!0.89!14.02!Tshz2;;chr1:120879128..120879183,-!p3@Gli2!0.89!13.35!Gli2;;chr15:102828642..102828653,+!p2@Hoxc6!0.89!6.76!Hoxc6;;chr2:169458192..169458247,+!p1@Tshz2!0.88!62.18!Tshz2;;chr15:81633165..81633188,+!p2@Tef!0.87!56.09!Tef;;chr7:17647736..17647772,-!p1@Hif3a!0.87!23.99!Hif3a;;chr12:9581262..9581282,+!p1@Osr1!0.86!78.90!Osr1;;chr4:122911086..122911112,+!p1@Heyl!0.86!77.04!Heyl;;chr2:169458519..169458555,+!p2@Tshz2!0.86!26.86!Tshz2;;chr2:38567715..38567730,-!p2@Nr5a1!0.86!6.25!Nr5a1;;chr4:133109285..133109308,+!p1@Nr0b2!0.86!6.25!Nr0b2;;chr2:104966933..104966966,+!p3@Wt1!0.85!6.08!Wt1;;chr2:74543202..74543213,+!p3@Hoxd8!0.84!5.91!Hoxd8;;chr1:38684260..38684312,-!p2@Aff3!0.83!43.08!Aff3;;chr12:3891810..3891829,+!p2@Dnmt3a!0.82!9.12!Dnmt3a;;chr11:98826178..98826197,+!p7@Rara!0.82!5.58!Rara;;chr7:6649134..6649167,-!p1@Zim1!0.81!31.76!Zim1;;chr2:74542918..74542971,+!p1@Hoxd8!0.81!8.62!Hoxd8;;chr2:74536050..74536065,+!p2@Hoxd9!0.81!5.41!Hoxd9;;chr4:119960301..119960359,-!p1@Foxo6!0.80!18.42!Foxo6;;chr2:104966662..104966673,+!p4@Wt1!0.80!5.24!Wt1;;chr12:34642682..34642753,+!p2@Twist1!0.78!14.36!Twist1;;chr2:30700788..30700824,+!p2@Prrx2!0.78!7.94!Prrx2;;chr14:63890660..63890687,-!p7@Gata4!0.78!5.07!Gata4;;chr11:52096804..52096896,-!p1@Tcf7!0.77!43.59!Tcf7;;chr11:85646263..85646278,+!p2@Tbx2!0.77!13.52!Tbx2;;chr1:140739042..140739054,-!p2@Lhx9!0.75!4.56!Lhx9;;chr2:104966465..104966479,+!p6@Wt1!0.75!4.56!Wt1;;chr7:77505617..77505632,-!p1@Nr2f2!0.74!231.47!Nr2f2;;chr5:135582751..135582788,+!p1@Mlxipl!0.74!19.77!Mlxipl;;chr10:80809447..80809515,-!p5@Hmg20b!0.74!5.58!Hmg20b;;chr9:36954842..36954908,-!p1@Pknox2!0.73!56.43!Pknox2;;chr2:25702844..25702859,-!p1@Sohlh1!0.73!4.39!Sohlh1;;chr11:85646341..85646352,+!p3@Tbx2!0.72!8.95!Tbx2;;chr2:74549945..74549965,+!p4@Hoxd3!0.72!4.22!Hoxd3;;chr15:81633139..81633152,+!p4@Tef!0.70!7.10!Tef;;chr10:5636374..5636421,-!p1@Esr1!0.70!5.24!Esr1;;chr19:25580272..25580305,+!p3@Dmrt1!0.70!4.05!Dmrt1;;chr2:180377386..180377462,-!p1@Tcfl5!0.68!4.73!Tcfl5;;chr19:26822880..26822964,+!p2@Smarca2!0.67!35.99!Smarca2;;chr4:3865501..3865548,-!p1@Plag1!0.67!21.63!Plag1;;chr2:152223441..152223465,-!p2@Sox12!0.67!17.06!Sox12;;chr18:11052485..11052508,+!p2@Gata6!0.67!11.49!Gata6;;chr2:91864300..91864379,-!p2@Creb3l1!0.66!11.66!Creb3l1;;chr2:74535796..74535808,+!p3@Hoxd9!0.66!3.55!Hoxd9;;chr14:63890519..63890539,-!p3@Gata4!0.66!3.55!Gata4;;chr11:98826125..98826141,+!p12@Rara!0.66!3.55!Rara;;chr2:169458352..169458397,+!p3@Tshz2!0.65!9.80!Tshz2;;chr12:3891753..3891801,+!p4@Dnmt3a!0.65!6.08!Dnmt3a;;chrX:103070960..103070973,-!p7@Atrx!0.65!4.90!Atrx;;chr14:76904313..76904328,+!p1@Tsc22d1!0.64!763.68!Tsc22d1;;chr2:25562346..25562433,+!p1@Bmyc!0.64!72.14!Bmyc;;chr18:11052456..11052477,+!p3@Gata6!0.64!12.00!Gata6;;chr2:74542974..74542986,+!p5@Hoxd8!0.64!3.38!Hoxd8;;chr5:31270977..31270988,+!p3@Tcf23!0.64!3.38!Tcf23;;chr10:126778639..126778670,-!p3@Gli1!0.64!3.38!Gli1;;chr1:120949925..120949947,-!p4@Gli2!0.63!6.93!Gli2;;chr10:5734525..5734569,-!p3@Esr1!0.63!5.91!Esr1;;chr1:38684383..38684394,-!p4@Aff3!0.63!4.73!Aff3;;chr11:5761889..5761969,+!p1@Aebp1!0.62!156.96!Aebp1;;chr1:120949949..120950000,-!p1@Gli2!0.62!16.05!Gli2;;chr2:181194069..181194144,-!p1@Zbtb46!0.61!20.44!Zbtb46;;chr18:65741358..65741415,+!p1@Zfp532!0.61!15.71!Zfp532;;chr6:48395825..48395846,-!p3@Zfp467!0.61!13.52!Zfp467;;chr1:9690424..9690467,-!p1@Mybl1!0.61!7.10!Mybl1;;chr2:105003277..105003280,+!p5@Wt1!0.61!3.04!Wt1;;chr2:74543397..74543435,+!p2@Hoxd8!0.61!3.04!Hoxd8;;chr7:6615049..6615056,-!p1@uc009fbu.1!0.61!3.04!Zim2;;chr15:76701495..76701535,-!p3@Zfp251!0.61!3.04!Zfp251;;chr12:12948633..12948651,-!p1@Mycn!0.60!34.47!Mycn;;chr2:169458496..169458516,+!p6@Tshz2!0.60!7.10!Tshz2;;chr4:108151497..108151514,+!p3@Zcchc11!0.60!6.59!Zcchc11;;chr7:77511622..77511657,-!p5@Nr2f2!0.59!3.89!Nr2f2;;chr15:35225873..35225889,+!p2@Osr2!0.59!2.87!Osr2;;chr2:74536071..74536083,+!p4@Hoxd9!0.59!2.87!Hoxd9;;chr7:77511234..77511302,-!p2@Nr2f2!0.58!22.64!Nr2f2;;chr4:84320893..84320910,-!p1@Bnc2!0.58!7.10!Bnc2;;chr11:5761979..5761992,+!p2@Aebp1!0.58!6.42!Aebp1;;chr4:122911056..122911065,+!p2@Heyl!0.58!4.73!Heyl;;chr15:75578637..75578669,-!p2@Mafa!0.58!3.21!Mafa;;chr2:30700857..30700873,+!p3@Prrx2!0.57!4.05!Prrx2;;chr17:35642997..35643014,+!p1@Pou5f1!0.57!2.70!Pou5f1;;chr7:19679964..19679982,+!p1@Six5!0.56!8.79!Six5;;chr18:65741935..65741964,+!p2@Zfp532!0.56!8.45!Zfp532;;chr14:55711114..55711159,-!p2@Zfhx2!0.56!6.76!Zfhx2;;chr7:77511311..77511352,-!p4@Nr2f2!0.56!6.08!Nr2f2;;chr15:76287876..76287894,+!p1@Scx!0.55!17.40!Scx;;chr11:74981654..74981658,-!p1@Hic1!0.55!12.33!Hic1;;chr13:22036953..22037009,+!p1@Zfp184!0.55!8.11!Zfp184;;chr4:58956447..58956510,+!p1@Zkscan16!0.55!6.42!Zkscan16;;chr2:30700881..30700916,+!p1@Prrx2!0.55!5.41!Prrx2;;chrX:103070746..103070764,-!p5@Atrx!0.55!4.22!Atrx;;chr8:90483433..90483457,-!p2@Zfp423!0.55!3.72!Zfp423;;chr15:103164702..103164778,-!p3@Zfp385a!0.55!3.21!Zfp385a;;chr8:26958093..26958148,-!p2@Ash2l!0.55!2.53!Ash2l;;chr10:5734582..5734595,-!p10@Esr1!0.55!2.53!Esr1;;chr17:47278081..47278103,+!p1@Trerf1!0.54!6.76!Trerf1;;chr2:152223469..152223512,-!p1@Sox12!0.53!15.71!Sox12;;chr15:50720601..50720630,-!p2@Trps1!0.53!6.76!Trps1;;chr17:35642973..35642994,+!p2@Pou5f1!0.53!2.37!Pou5f1;;chr5:31271010..31271019,+!p2@Tcf23!0.53!2.37!Tcf23;;chrX:35232210..35232214,-!p1@Rhox8!0.53!2.37!Rhox8;;chrX:35474351..35474366,+!p1@Rhox13!0.53!2.37!Rhox13;;chr2:104966436..104966455,+!p7@Wt1!0.53!2.37!Wt1;;chr16:14705925..14705951,+!p1@Snai2!0.52!20.95!Snai2;;chr18:75527030..75527055,+!p2@Smad7!0.52!18.25!Smad7;;chr14:65977324..65977372,+!p2@Zfp395!0.52!16.73!Zfp395;;chr14:56443806..56443848,+!p1@Nfatc4!0.52!5.41!Nfatc4;;chr11:85646427..85646451,+!p4@Tbx2!0.52!4.56!Tbx2;;chr11:98605517..98605539,+!p5@Thra!0.52!3.72!Thra;;chr7:25372631..25372684,-!p1@Zfp575!0.51!8.28!Zfp575;;chr9:122812356..122812381,+!p@chr9:122812356..122812381,+!0.51!5.07!Gm8008;;chrX:45245621..45245632,-!p3@Smarca1!0.51!3.38!Smarca1;;chr6:72850124..72850210,-!p7@Kcmf1!0.51!3.21!Kcmf1;;chr7:52471143..52471186,+!p1@Tead2!0.50!30.07!Tead2;;chr8:90483459..90483475,-!p1@Zfp423!0.50!7.27!Zfp423;;chr7:77511928..77511937,-!p12@Nr2f2!0.50!2.20!Nr2f2;;chr2:169458593..169458603,+!p13@Tshz2!0.50!2.20!Tshz2;;chr15:102797288..102797302,+!p1@Hoxc10!0.50!2.20!Hoxc10;;chr2:74543235..74543246,+!p7@Hoxd8!0.50!2.20!Hoxd8;;chr4:89354729..89354776,+!p1@Dmrta1!0.50!2.20!Dmrta1;;chr10:5636354..5636373,-!p2@Esr1!0.50!2.20!Esr1;;chr16:4594740..4594759,+!p1@Glis2!0.49!31.93!Glis2;;chr7:37483231..37483263,+!p2@Tshz3!0.49!3.55!Tshz3;;chr12:9581243..9581254,+!p4@Osr1!0.49!3.21!Osr1;;chr7:17642018..17642045,-!p4@Hif3a!0.49!2.53!Hif3a;;chr11:44430812..44430838,+!p1@Ebf1!0.48!26.53!Ebf1;;chr17:37139472..37139514,+!p1@Zfp57!0.48!18.08!Zfp57;;chr4:62626594..62626651,+!p1@Zfp618!0.48!9.80!Zfp618;;chr4:84321280..84321298,-!p5@Bnc2!0.48!2.03!Bnc2;;chr11:112643496..112643562,+!p1@Sox9!0.47!98.84!Sox9;;chr2:167363692..167363710,+!p1@Snai1!0.47!32.10!Snai1;;chr4:128483534..128483613,-!p1@Zfp362!0.47!18.08!Zfp362;;chr3:94641455..94641486,+!p4@Pogz!0.47!6.42!Pogz;;chr1:120950098..120950132,-!p2@Gli2!0.47!5.41!Gli2;;chr8:87237732..87237745,-!p7@Nfix!0.47!3.55!Nfix;;chr11:102177921..102177960,-!p9@Ubtf!0.47!3.21!Ubtf;;chr15:102865088..102865107,+!p1@Hoxc4!0.47!2.87!Hoxc4;;chr4:154335024..154335039,+!p1@Hes5!0.47!2.53!Hes5;;chr18:75527009..75527027,+!p1@Smad7!0.46!54.07!Smad7;;chr9:32443818..32443854,+!p2@Ets1!0.46!10.98!Ets1;;chr15:50721616..50721632,-!p4@Trps1!0.46!6.25!Trps1;;chr4:97439519..97439539,+!p11@Nfia!0.46!4.90!Nfia;;chr4:126700650..126700678,+!p5@Sfpq!0.46!4.56!Sfpq;;chr12:9581284..9581303,+!p2@Osr1!0.46!4.39!Osr1;;chr11:85646469..85646488,+!p5@Tbx2!0.46!3.21!Tbx2;;chr10:126779021..126779032,-!p2@Gli1!0.46!2.53!Gli1;;chr14:63890545..63890560,-!p5@Gata4!0.4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Hoxa7;;chr6:92041372..92041383,+!p6@Nr2c2!0.20!1.01!Nr2c2;;chr18:3281725..3281740,-!p3@Crem!0.20!1.01!Crem;;chr3:133207369..133207376,-!p3@Tet2!0.20!1.01!Tet2;;chr1:4486453..4486470,-!p3@Sox17!0.20!1.01!Sox17;;chr1:33871240..33871251,-!p5@Zfp451!0.20!1.01!Zfp451;;chr7:6315994..6316007,+!p2@Zfp78!0.20!1.01!Zfp78;;chr4:108132526..108132533,+!p11@Zcchc11!0.20!0.84!Zcchc11;;chr10:79896360..79896400,-!p1@Tcf3!0.19!56.43!Tcf3;;chr16:91044627..91044703,-!p1@Gcfc1!0.19!44.27!Gcfc1;;chr9:56266612..56266654,+!p1@Hmg20a!0.19!38.35!Hmg20a;;chr16:20141134..20141213,+!p1@Yeats2!0.19!35.99!Yeats2;;chr12:100801772..100801861,-!p1@Foxn3!0.19!28.22!Foxn3;;chr11:83943084..83943122,-!p1@Tada2a!0.19!20.78!Tada2a;;chr6:128312937..128313076,+!p1@Foxm1!0.19!18.75!Foxm1;;chr6:53523358..53523388,+!p1@Creb5!0.19!16.39!Creb5;;chr10:20032304..20032324,+!p2@Bclaf1!0.19!12.67!Bclaf1;;chr19:55816770..55816793,+!p2@Tcf7l2!0.19!11.32!Tcf7l2;;chr6:47785649..47785724,+!p1@Zfp398!0.19!10.81!Zfp398;;chr13:21622953..21622972,-!p2@Zfp192!0.19!7.60!Zfp192;;chr18:35721834..35721851,+!p2@Matr3!0.19!6.59!Matr3;;chr7:134169810..134169824,-!p7@Maz!0.19!4.56!Maz;;chr9:71959562..71959624,-!p3@Tcf12!0.19!4.05!Tcf12;;chr1:64579440..64579451,+!p4@Creb1!0.19!4.05!Creb1;;chr11:80196900..80196917,+!p3@Zfp207!0.19!3.89!Zfp207;;chr12:37835141..37835194,+!p1@Meox2!0.19!3.55!Meox2;;chr14:52634234..52634281,-!p3@Zfp219!0.19!3.04!Zfp219;;chr2:153475210..153475252,+!p2@Dnmt3b!0.19!3.04!Dnmt3b;;chr6:47827570..47827593,+!p3@Zfp282!0.19!3.04!Zfp282;;chr18:74427866..74427881,+!p3@Mbd1!0.19!2.87!Mbd1;;chr18:84255649..84255661,-!p4@Tshz1!0.19!2.87!Tshz1;;chr5:139060915..139060929,-!p3@Zfp68!0.19!2.70!Zfp68;;chr10:107769750..107769799,+!p2@Pawr!0.19!2.20!Pawr;;chr13:5860740..5860747,+!p4@Klf6!0.19!2.20!Klf6;;chr13:58501849..58501853,-!p5@Hnrnpk!0.19!1.69!Hnrnpk;;chr11:99092280..99092302,-!p3@Smarce1!0.19!1.35!Smarce1;;chr4:135840552..135840567,+!p4@Zfp46!0.19!1.35!Zfp46;;chr5:138187411..138187422,+!p8@Tsc22d4!0.19!1.35!Tsc22d4;;chr5:125659510..125659517,-!p3@Ncor2!0.19!1.18!Ncor2;;chr16:43619156..43619171,+!p16@Zbtb20!0.19!1.01!Zbtb20;;chr18:69680960..69681007,+!p10@Tcf4!0.19!1.01!Tcf4;;chr11:4604619..4604634,+!p2@Zmat5!0.19!1.01!Zmat5;;chr1:4486505..4486527,-!p5@Sox17!0.19!1.01!Sox17;;chr19:7342786..7342803,+!p2@Rcor2!0.19!1.01!Rcor2;;chr1:9690398..9690410,-!p2@Mybl1!0.19!0.84!Mybl1;;chr16:43503594..43503634,+!p15@Zbtb20!0.19!0.84!Zbtb20;;chr4:128483422..128483430,-!p6@Zfp362!0.19!0.84!Zfp362;;chr4:107107175..107107204,+!p1@Glis1!0.19!0.84!Glis1;;chr6:52664406..52664434,+!p3@Tax1bp1!0.19!0.84!Tax1bp1;;chr2:34227273..34227292,-!p4@Pbx3!0.19!0.68!Pbx3;;chr13:29045559..29045574,-!p1@Sox4!0.18!113.88!Sox4;;chr12:75008961..75009002,+!p1@Hif1a!0.18!82.62!Hif1a;;chr12:81213989..81214006,-!p1@Zfp36l1!0.18!69.61!Zfp36l1;;chr7:30954720..30954785,-!p1@LOC677248,p1@Zfp146!0.18!35.31!Zfp146;;chr11:98798983..98799049,+!p1@Rara!0.18!34.47!Rara;;chr4:97444297..97444323,+!p2@Nfia!0.18!20.78!Nfia;;chrX:98728131..98728214,+!p1@Taf1!0.18!18.92!Taf1;;chr8:108939219..108939296,+!p1@Zfp90!0.18!14.02!Zfp90;;chr9:121669118..121669179,+!p1@Zfp651!0.18!14.02!Zfp651;;chr1:74634538..74634615,-!p1@Zfp142!0.18!10.64!Zfp142;;chr9:122795920..122795977,+!p1@Zfp167!0.18!10.48!Zfp167;;chr14:52935876..52935928,-!p1@Sall2!0.18!10.48!Sall2;;chr7:50835064..50835134,+!p1@Zfp719!0.18!10.14!Zfp719;;chr2:162880327..162880385,+!p2@Mybl2!0.18!8.45!Mybl2;;chr17:48061409..48061431,-!p4@Foxp4!0.18!6.59!Foxp4;;chr16:3847206..3847307,+!p1@Zfp174!0.18!5.91!Zfp174;;chr5:139060892..139060911,-!p2@Zfp68!0.18!5.91!Zfp68;;chr16:33380881..33380909,+!p1@Zfp148!0.18!5.24!Zfp148;;chrX:132420525..132420558,+!p3@Bhlhb9!0.18!5.07!Bhlhb9;;chrX:109714331..109714347,+!p1@Zfp711!0.18!4.90!Zfp711;;chr6:117813087..117813121,+!p1@Zfp239!0.18!4.39!Zfp239;;chr7:25101609..25101678,-!p1@Zfp94!0.18!4.22!Zfp94;;chr4:122673278..122673336,+!p1@Mycl1!0.18!3.55!Mycl1;;chr2:44966659..44966675,-!p7@Zeb2!0.18!3.21!Zeb2;;chr13:23460838..23460880,-!p2@Zfp322a!0.18!3.21!Zfp322a;;chr15:75447162..75447217,+!p2@Zfp41!0.18!3.21!Zfp41;;chr3:14578741..14578759,+!p3@E2f5!0.18!2.87!E2f5;;chr18:5334765..5334833,-!p2@Zfp438!0.18!2.87!Zfp438;;chr11:59285966..59285990,-!p2@Zfp867!0.18!2.70!Zfp867;;chr2:165818108..165818119,+!p2@Ncoa3!0.18!2.70!Ncoa3;;chrX:35542909..35542927,+!p4@Zbtb33!0.18!2.70!Zbtb33;;chr10:67000609..67000625,+!p1@Egr2!0.18!2.37!Egr2;;chr6:90412556..90412581,+!p3@Klf15!0.18!2.20!Klf15;;chr10:119913546..119913583,-!p3@Hmga2!0.18!2.03!Hmga2;;chr18:75979866..75979890,+!p3@Zbtb7c!0.18!2.03!Zbtb7c;;chr18:79306577..79306592,-!p3@Setbp1!0.18!1.86!Setbp1;;chr6:146744563..146744594,+!p1@Arntl2!0.18!1.69!Arntl2;;chr4:45024818..45024846,-!p4@Zbtb5!0.18!1.69!Zbtb5;;chr11:70043257..70043263,-!p1@Bcl6b!0.18!1.52!Bcl6b;;chr12:25336286..25336297,+!p2@Klf11!0.18!1.18!Klf11;;chr7:134169459..134169468,-!p15@Maz!0.18!1.01!Maz;;chr17:37139432..37139444,+!p4@Zfp57!0.18!1.01!Zfp57;;chr18:65741911..65741929,+!p3@Zfp532!0.18!1.01!Zfp532;;chr1:120950197..120950215,-!p5@Gli2!0.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scan22;;chr13:67784412..67784499,-!p1@Zfp738!0.16!11.32!Zfp738;;chr4:94718861..94718872,-!p2@Jun!0.16!9.12!Jun;;chr5:31754831..31754876,+!p1@Zfp512!0.16!8.95!Zfp512;;chrX:103124643..103124660,-!p2@Atrx!0.16!8.11!Atrx;;chr7:28764174..28764200,-!p1@Zfp780b!0.16!8.11!Zfp780b;;chr7:17200422..17200487,-!p3@Grlf1!0.16!7.77!Grlf1;;chr4:118967125..118967143,-!p2@Ybx1!0.16!7.60!Ybx1;;chr5:92391901..92391936,+!p1@Thap6!0.16!5.74!Thap6;;chr6:115803364..115803407,-!p1@Mbd4!0.16!4.90!Mbd4;;chr3:14578786..14578807,+!p2@E2f5!0.16!4.22!E2f5;;chr17:45570455..45570479,-!p2@Cdc5l!0.16!4.05!Cdc5l;;chr3:95021663..95021687,-!p3@Gabpb2!0.16!3.72!Gabpb2;;chr13:15555496..15555544,+!p1@Gli3!0.16!3.72!Gli3;;chr10:79896328..79896339,-!p3@Tcf3!0.16!3.72!Tcf3;;chr13:58503894..58503895,-!p4@Hnrnpk!0.16!3.55!Hnrnpk;;chr4:133310175..133310212,-!p5@Arid1a!0.16!3.38!Arid1a;;chr14:52898807..52898863,+!p2@Tox4!0.16!3.04!Tox4;;chrX:20527723..20527739,-!p2@Elk1!0.16!3.04!Elk1;;chr5:130175949..130175975,-!p1@Zfp11!0.16!2.87!Zfp11;;chr7:30857891..30857943,-!p1@LOC100505067,p3@Zfp82!0.16!2.70!Zfp82;;chr2:166888481..166888548,-!p3@Znfx1!0.16!2.70!Znfx1;;chr3:30500978..30501018,+!p1@Mynn!0.16!2.70!Mynn;;chr2:34227446..34227511,-!p1@Pbx3!0.16!2.20!Pbx3;;chr13:37918094..37918119,+!p6@Rreb1!0.16!2.03!Rreb1;;chr7:74517732..74517743,-!p4@Mef2a!0.16!1.69!Mef2a;;chr4:126700683..126700704,+!p6@Sfpq!0.16!1.69!Sfpq;;chr19:55817590..55817625,+!p11@Tcf7l2!0.16!1.18!Tcf7l2;;chr10:127176667..127176679,+!p2@Zbtb39!0.16!1.18!Zbtb39;;chr6:47785727..47785738,+!p6@Zfp398!0.16!1.01!Zfp398;;chr7:87171081..87171101,+!p6@Zfp710!0.16!1.01!Zfp710;;chr9:68501549..68501564,+!p6@Rora!0.16!0.84!Rora;;chr17:35031524..35031539,+!p4@Zbtb12!0.16!0.84!Zbtb12;;chr18:5593564..5593584,+!p2@Zeb1!0.16!0.68!Zeb1;;chr10:127896295..127896304,+!p6@Smarcc2!0.16!0.68!Smarcc2;;chr10:126726112..126726123,-!p12@Mbd6!0.16!0.68!Mbd6;;chr8:90328310..90328362,-!p3@Zfp423!0.16!0.68!Zfp423;;chr10:75384307..75384370,-!p1@Smarcb1!0.15!98.50!Smarcb1;;chr15:102301149..102301221,+!p2@Pcbp2!0.15!46.63!Pcbp2;;chr8:13869673..13869740,+!p1@Zfp828!0.15!30.07!Zfp828;;chr18:14131126..14131211,-!p1@Zfp521!0.15!26.53!Zfp521;;chr18:61336648..61336711,-!p1@Hmgxb3!0.15!23.32!Hmgxb3;;chr8:108583462..108583523,+!p1@Nfatc3!0.15!23.15!Nfatc3;;chr1:182499095..182499141,+!p2@Parp1!0.15!21.80!Parp1;;chr2:75542592..75542609,-!p2@Nfe2l2!0.15!21.46!Nfe2l2;;chr15:100058266..100058287,+!p1@Atf1!0.15!19.43!Atf1;;chr15:76701830..76701883,-!p1@Zfp251!0.15!16.56!Zfp251;;chr6:47870583..47870635,+!p1@Zfp212!0.15!15.38!Zfp212;;chr1:193961880..193961929,-!p1@Rcor3!0.15!13.35!Rcor3;;chr6:47827642..47827707,+!p1@Zfp282!0.15!13.01!Zfp282;;chr16:87699149..87699204,+!p2@Bach1!0.15!9.63!Bach1;;chr14:56223010..56223067,+!p1@Irf9!0.15!9.29!Irf9;;chr7:25292331..25292421,+!p1@Zfp428!0.15!8.45!Zfp428;;chr7:13563183..13563249,+!p1@Zfp446!0.15!8.28!Zfp446;;chr6:133985993..133986029,+!p2@Etv6!0.15!7.60!Etv6;;chr7:50568603..50568655,-!p1@Zfp715!0.15!6.76!Zfp715;;chr7:50834947..50835010,+!p2@Zfp719!0.15!6.08!Zfp719;;chr1:133904670..133904731,+!p2@Elk4!0.15!5.91!Elk4;;chr15:76709732..76709764,+!p1@Zfp7!0.15!5.41!Zfp7;;chr5:147760305..147760324,+!p2@Gtf3a!0.15!5.41!Gtf3a;;chr1:170362335..170362356,-!p4@Pbx1!0.15!5.07!Pbx1;;chr18:69504195..69504213,+!p4@Tcf4!0.15!5.07!Tcf4;;chr13:37917925..37917950,+!p4@Rreb1!0.15!4.22!Rreb1;;chr13:99954640..99954681,+!p1@Zfp366!0.15!3.89!Zfp366;;chr12:3806536..3806571,+!p3@Dnmt3a!0.15!3.89!Dnmt3a;;chr16:33380851..33380873,+!p3@Zfp148!0.15!3.72!Zfp148;;chr6:48552000..48552042,+!p@chr6:48552000..48552042,+!0.15!3.04!Zfp775;;chr4:54957910..54957954,+!p2@Zfp462!0.15!3.04!Zfp462;;chr9:21420744..21420755,+!p3@Smarca4!0.15!2.87!Smarca4;;
+|ffid_belonging_in_development=UBERON:0009117,UBERON:0002532,UBERON:0006603,UBERON:0005564,UBERON:0010316,FF:0000294
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |has_quality=
 |id=FF:503-18G5
-|is_a=EFO:0002091;;FF:0000004;;FF:0000103;;FF:0011377
+|is_a=EFO:0002091;;FF:0011377
+|is_obsolete=
+|library_id=CNhs11027
+|library_id_phase_based=2:CNhs11027
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;503
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;503
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/testis%252c%2520embryo%2520E18.CNhs11027.503-18G5.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/testis%252c%2520embryo%2520E18.CNhs11027.503-18G5.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/testis%252c%2520embryo%2520E18.CNhs11027.503-18G5.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/testis%252c%2520embryo%2520E18.CNhs11027.503-18G5.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/testis%252c%2520embryo%2520E18.CNhs11027.503-18G5.mm9.nobarcode.rdna.fa.gz
 |name=testis, embryo E18
 |namespace=FANTOM5
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11027,LSID731,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|repeat_enrich_byfamily=0.134536977653555,0.00400486479939107,0,0,0,0.0799255472522492,0.482875574142178,0,0.0346913682098433,0,0,1.37875781052753,0,0,0,0,0,0,0.289187000339151,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145293815157343,0,0,0,0,0.0223434283728741,0.129669905960361,0.0293877911183118,-0.239133020404513,0.778753739236654,-0.0456401021288386,0,0,0,0,0,0,0,0,0,0,0.126427630498926,0.481080351221726,0.112069771195608,0.0677982110636083,0,0,0,0,0,-0.0185822975100304,0.0677982110636083,0,0.0507915782763898,0.101435958588134,0.0283419741168008,-0.0902928317074742,0.170945568723887,0,0.0677982110636083,0,0,0.224228535881513,0,0.0602093813031488,-0.00273800289785185,-0.16623344092899,0.099243723919141,0,0,0,0,0,0,-0.0136883900067283,0.233875636314083,-0.1029315320349,0.0328690594148007,0,0.0677982110636083,0,0
 |rna_box=18
 |rna_catalog_number=
@@ Line 57: / Line 76: @@
 |rna_weight_ug=
 |sample_age=
+|sample_category=developmental
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 76: / Line 96: @@
 |sample_tissue=testis
 |top_motifs=ZNF384:1.90752305673;HIF1A:1.65347025196;ZNF238:1.54465382127;MYBL2:1.51375575477;NKX3-1:1.422757012;NKX6-1,2:1.42141542128;EVI1:1.39109181793;GATA4:1.3613778501;FOXP1:1.35954102866;TEF:1.3510709058;GLI1..3:1.34519387766;IKZF2:1.31718097434;NR6A1:1.22716801103;PITX1..3:1.22288729411;ZBTB16:1.21748868467;PAX4:1.19385875336;NRF1:1.1158588185;FOXP3:1.09630498082;HOX{A5,B5}:1.03005076776;GCM1,2:1.0127183419;STAT1,3:1.00003409948;NR5A1,2:0.982802366988;NFY{A,B,C}:0.97951442769;ZNF143:0.938976021836;AIRE:0.919729719512;GFI1B:0.896763105516;RXR{A,B,G}:0.855935286078;FOXD3:0.84564904531;CRX:0.825509691907;SP1:0.807615394902;E2F1..5:0.805520296606;PATZ1:0.778799435275;HSF1,2:0.755892618403;POU1F1:0.741139494344;GFI1:0.719867436267;IKZF1:0.709726510718;ZIC1..3:0.641608520114;NANOG{mouse}:0.639781239105;XCPE1{core}:0.614686953024;TOPORS:0.610342548084;EGR1..3:0.606500585283;NFIX:0.593952488297;SOX5:0.555139245282;CDX1,2,4:0.549299226023;TLX1..3_NFIC{dimer}:0.534267821171;UFEwm:0.5230900577;ZNF423:0.500724040808;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.481764178575;CDC5L:0.46102355505;HMGA1,2:0.457968891636;RBPJ:0.451049274771;EP300:0.449847623346;TEAD1:0.433741431983;NFATC1..3:0.408381775184;NR1H4:0.394551243105;KLF4:0.375438478878;RREB1:0.374876951762;BPTF:0.374282563175;DBP:0.361469254613;ARID5B:0.361176197237;NKX2-2,8:0.347163030628;TFAP2{A,C}:0.345196952455;HOXA9_MEIS1:0.340848286427;GTF2I:0.28640720415;TFDP1:0.261143224884;PAX6:0.229989987894;RFX2..5_RFXANK_RFXAP:0.226416660771;MAZ:0.205913687637;HBP1_HMGB_SSRP1_UBTF:0.195495987149;BREu{core}:0.155573207743;ELK1,4_GABP{A,B1}:0.138009620616;ADNP_IRX_SIX_ZHX:0.125314682542;CREB1:0.119011985723;MYB:0.117502273382;MZF1:0.108033833531;POU6F1:0.0996559602942;ZFP161:0.0848431517489;LHX3,4:0.0731146329524;MTE{core}:0.0522326004919;SOX2:0.0379416208283;GZF1:0.0239186513223;bHLH_family:0.0124307533023;TAL1_TCF{3,4,12}:0.00722514145592;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.00737288337301;RFX1:-0.0171887386286;GTF2A1,2:-0.0274356782675;GATA6:-0.0358175308178;SOX17:-0.0460925689301;ESRRA:-0.0673343425716;MED-1{core}:-0.0720701734636;T:-0.0946439099834;FOXL1:-0.0975922554525;TFAP4:-0.102764011227;SPIB:-0.105979994068;YY1:-0.12490164785;AHR_ARNT_ARNT2:-0.128217584444;PRDM1:-0.131866903012;HIC1:-0.134557941614;POU5F1:-0.135916736983;SRF:-0.154638467985;PRRX1,2:-0.198027362775;REST:-0.227117575339;MEF2{A,B,C,D}:-0.229225649598;AR:-0.251840183493;LEF1_TCF7_TCF7L1,2:-0.255401768318;PAX5:-0.256482273258;TFCP2:-0.258139162721;FOXN1:-0.266649803502;ATF2:-0.271973351803;IRF1,2:-0.27886895525;CUX2:-0.279214774315;TFAP2B:-0.27978058279;NKX2-3_NKX2-5:-0.280018819256;ELF1,2,4:-0.280982877265;IRF7:-0.296888557489;ESR1:-0.30659865441;ALX4:-0.311407347518;RUNX1..3:-0.336518471597;ATF4:-0.350086234737;MTF1:-0.352727597255;POU2F1..3:-0.364049780957;MYFfamily:-0.371727382576;FOX{D1,D2}:-0.378976374923;EN1,2:-0.379155888083;SOX{8,9,10}:-0.389423124799;ZNF148:-0.440706193739;NKX2-1,4:-0.453338098713;FOXO1,3,4:-0.455539585612;HES1:-0.462478899769;NKX3-2:-0.470108164314;PAX1,9:-0.481973757194;PBX1:-0.485906020141;FOXQ1:-0.502129897188;OCT4_SOX2{dimer}:-0.503187492574;RORA:-0.504744806299;ALX1:-0.510688732483;ETS1,2:-0.520936711982;ONECUT1,2:-0.536331109318;BACH2:-0.541293530751;SPI1:-0.547355607504;SPZ1:-0.555038425243;DMAP1_NCOR{1,2}_SMARC:-0.556121661369;TP53:-0.581290106358;TBP:-0.58367476114;CEBPA,B_DDIT3:-0.586703076914;NFKB1_REL_RELA:-0.595294549915;HNF4A_NR2F1,2:-0.597188879613;HLF:-0.614865161941;EBF1:-0.619301225963;RXRA_VDR{dimer}:-0.628080533315;HNF1A:-0.693667361038;SMAD1..7,9:-0.696353893341;TBX4,5:-0.701250301331;POU3F1..4:-0.703100601325;HOX{A4,D4}:-0.710463895347;FOXM1:-0.712996535049;SREBF1,2:-0.722469070265;STAT5{A,B}:-0.765058431302;MAFB:-0.774788259521;PAX2:-0.806634469247;PDX1:-0.824976377751;LMO2:-0.834583415178;NFIL3:-0.84956098405;STAT2,4,6:-0.857694525135;NFE2:-0.891672692327;HAND1,2:-0.901219510104;FOXA2:-0.919481329161;NHLH1,2:-0.949384258722;VSX1,2:-0.960259202731;ZBTB6:-0.985543281208;NANOG:-1.04240192652;TGIF1:-1.05964767508;FOX{F1,F2,J1}:-1.06950527215;HMX1:-1.09791975652;ATF6:-1.10067148836;NFE2L2:-1.14715590372;JUN:-1.15331283934;FOS_FOS{B,L1}_JUN{B,D}:-1.16388143855;TLX2:-1.18483346695;FOX{I1,J2}:-1.22493363227;SNAI1..3:-1.23561429954;ZEB1:-1.34519257114;ATF5_CREB3:-1.39155107949;NFE2L1:-1.46138813613;NR3C1:-1.57536401701;PPARG:-1.6200864783;MYOD1:-1.64978673977;PAX8:-1.68462719497;FOSL2:-1.74250349497
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:503-18G5;search_select_hide=table117:503-18G5
 }}

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FF:503-18G5: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:17, 4 June 2020

CNhs11027

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0