FFCP PHASE1:Hg19::chr10:105824227..105824253,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr10:105824227..105824253,+ | |||
|coexpression_cluster_id=C640 | |||
|description=CAGE_peak_at_chr10:105824227..105824253,+ | |description=CAGE_peak_at_chr10:105824227..105824253,+ | ||
|id=chr10:105824227..105824253,+ | |id=chr10:105824227..105824253,+ | ||
|ontology_enrichment_celltype=CL:0002076!1.31e-23!43;CL:0000066!4.53e-22!254;CL:0000223!2.82e-18!59;CL:0002251!1.97e-15!21;CL:0002368!5.55e-12!13;CL:0000244!3.31e-10!4;CL:0000731!3.31e-10!4;CL:0002541!4.52e-08!3;CL:0002159!5.16e-08!13;CL:0002623!5.69e-08!3;CL:0000349!7.83e-08!3;CL:0002577!7.83e-08!3;CL:0002621!8.97e-08!3;CL:0000622!1.04e-07!5;CL:0000076!4.44e-07!62 | |ontology_enrichment_celltype=CL:0002076!1.31e-23!43;CL:0000066!4.53e-22!254;CL:0000223!2.82e-18!59;CL:0002251!1.97e-15!21;CL:0002368!5.55e-12!13;CL:0000244!3.31e-10!4;CL:0000731!3.31e-10!4;CL:0002541!4.52e-08!3;CL:0002159!5.16e-08!13;CL:0002623!5.69e-08!3;CL:0000349!7.83e-08!3;CL:0002577!7.83e-08!3;CL:0002621!8.97e-08!3;CL:0000622!1.04e-07!5;CL:0000076!4.44e-07!62 | ||
|ontology_enrichment_celltype_v019=CL:0000349;1.97e-20;19!CL:0000244;2.45e-17;4!CL:0000731;2.45e-17;4!CL:0002076;8.31e-16;42!CL:0002251;2.05e-15;20!CL:0002623;2.04e-13;3!CL:0002577;4.91e-13;3!CL:0002621;6.83e-13;3!CL:0002159;2.65e-10;14!CL:0000575;3.53e-09;2!CL:0002536;5.34e-09;2!CL:0002537;2.31e-08;5!CL:0000622;3.19e-08;5!CL:0000240;3.76e-07;6!CL:0000311;3.76e-07;6!CL:0000079;3.76e-07;6!CL:0000237;3.76e-07;6!CL:0002541;4.99e-07;3!CL:0000154;6.47e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,2.10e-20,19;CL:0002076,7.34e-19,42;CL:0000066,1.65e-17,253;CL:0000244,2.03e-17,4;CL:0000731,2.03e-17,4;CL:0002251,2.07e-15,20;CL:0002623,2.52e-13,3;CL:0002577,4.52e-13,3;CL:0002621,5.80e-13,3;CL:0000223,1.04e-12,58;CL:0002159,2.45e-10,14;CL:0000575,4.00e-09,2;CL:0002536,6.29e-09,2;CL:0002537,2.37e-08,5;CL:0000622,3.61e-08,5;CL:0000240,3.57e-07,6;CL:0000311,3.57e-07,6;CL:0000079,3.57e-07,6;CL:0000237,3.57e-07,6;CL:0000036,3.57e-07,6;CL:0000357,3.57e-07,6;CL:0000114,3.57e-07,6;CL:0002541,4.99e-07,3;CL:0000154,7.17e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000357;3.76e-07;6!CL:0000114;3.76e-07;6 | |||
|ontology_enrichment_disease=DOID:1749!4.98e-20!14;DOID:305!5.79e-07!106 | |ontology_enrichment_disease=DOID:1749!4.98e-20!14;DOID:305!5.79e-07!106 | ||
|ontology_enrichment_disease_v019=DOID:1749;1.20e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.25e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0005631!3.94e-22!14;UBERON:0000158!3.94e-22!14;UBERON:0004119!3.12e-21!169;UBERON:0000925!3.12e-21!169;UBERON:0006595!3.12e-21!169;UBERON:0003124!5.31e-16!7;UBERON:0000166!3.11e-15!21;UBERON:0001004!1.67e-14!72;UBERON:0000161!5.15e-14!35;UBERON:0000165!1.37e-12!28;UBERON:0000930!1.37e-12!28;UBERON:0000365!1.19e-11!5;UBERON:0000478!1.39e-11!24;UBERON:0001007!2.16e-11!155;UBERON:0001555!2.16e-11!155;UBERON:0007026!2.16e-11!155;UBERON:0004923!1.79e-10!57;UBERON:0005910!1.27e-09!6;UBERON:0001987!1.28e-09!4;UBERON:0004340!1.28e-09!4;UBERON:0000077!2.02e-09!130;UBERON:0000305!1.86e-08!7;UBERON:0001444!4.09e-08!48;UBERON:0000476!4.52e-08!3;UBERON:0000920!4.52e-08!3;UBERON:0000344!7.90e-08!12;UBERON:0001949!8.97e-08!3;UBERON:0004921!1.08e-07!129;UBERON:0004185!1.08e-07!129;UBERON:0003729!1.40e-07!5;UBERON:0004871!2.48e-07!8;UBERON:0003408!2.68e-07!10;UBERON:0000065!2.94e-07!53;UBERON:0003102!3.01e-07!95;UBERON:0000974!6.19e-07!10;UBERON:0005911!7.18e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;3.17e-20;10!UBERON:0000158;3.17e-20;10!UBERON:0000486;3.29e-16;12!UBERON:0000478;9.29e-16;24!UBERON:0000305;7.24e-15;7!UBERON:0000365;6.83e-14;5!UBERON:0001949;6.83e-13;3!UBERON:0000165;7.72e-13;28!UBERON:0005910;1.37e-11;6!UBERON:0001987;6.81e-10;4!UBERON:0000161;7.85e-10;19!UBERON:0000166;7.85e-10;19!UBERON:0003729;7.85e-08;13!UBERON:0003124;4.99e-07;3!UBERON:0000920;4.99e-07;3!UBERON:0001044;6.47e-07;6!UBERON:0003293;6.47e-07;6!UBERON:0003294;6.47e-07;6!UBERON:0010047;6.47e-07;6!UBERON:0003408;6.47e-07;6!UBERON:0000167;6.47e-07;6!UBERON:0004923;7.14e-07;55 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.09e-28,14;UBERON:0000158,2.09e-28,14;UBERON:0000478,9.77e-16,24;UBERON:0003124,2.91e-15,7;UBERON:0000305,8.39e-15,7;UBERON:0000365,5.89e-14,5;UBERON:0000166,1.58e-13,22;UBERON:0001949,5.80e-13,3;UBERON:0004871,6.42e-13,8;UBERON:0000165,2.35e-12,29;UBERON:0000930,2.35e-12,29;UBERON:0000161,1.19e-11,36;UBERON:0005910,1.21e-11,6;UBERON:0000033,2.53e-11,56;UBERON:0004119,4.26e-11,160;UBERON:0000925,4.26e-11,160;UBERON:0006595,4.26e-11,160;UBERON:0004923,6.65e-11,66;UBERON:0003102,1.10e-10,99;UBERON:0000153,6.18e-10,62;UBERON:0007811,6.18e-10,62;UBERON:0001987,6.41e-10,4;UBERON:0004340,6.41e-10,4;UBERON:0001444,1.41e-09,49;UBERON:0003729,7.34e-08,13;UBERON:0001004,1.06e-07,74;UBERON:0000920,4.99e-07,3;UBERON:0001044,7.17e-07,6;UBERON:0003293,7.17e-07,6;UBERON:0003294,7.17e-07,6;UBERON:0010047,7.17e-07,6;UBERON:0000167,7.17e-07,6 | |||
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| ||
|short_description=p@chr10:105824227..105824253,+ | |short_description=p@chr10:105824227..105824253,+ | ||
}} | }} |
Latest revision as of 10:04, 23 July 2015
Short description: | p@chr10:105824227..105824253, + |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:105824227..105824253, + |
Coexpression cluster: | C640_amniotic_salivary_chorionic_Keratinocyte_Urothelial_Prostate_Mammary |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 2.10e-20 | 19 |
endo-epithelial cell | 7.34e-19 | 42 |
epithelial cell | 1.65e-17 | 253 |
transitional epithelial cell | 2.03e-17 | 4 |
urothelial cell | 2.03e-17 | 4 |
epithelial cell of alimentary canal | 2.07e-15 | 20 |
acinar cell of salivary gland | 2.52e-13 | 3 |
placental epithelial cell | 4.52e-13 | 3 |
gingival epithelial cell | 5.80e-13 | 3 |
endodermal cell | 1.04e-12 | 58 |
general ecto-epithelial cell | 2.45e-10 | 14 |
corneal epithelial cell | 4.00e-09 | 2 |
amniotic epithelial cell | 6.29e-09 | 2 |
amnion mesenchymal stem cell | 2.37e-08 | 5 |
acinar cell | 3.61e-08 | 5 |
stratified squamous epithelial cell | 3.57e-07 | 6 |
keratin accumulating cell | 3.57e-07 | 6 |
stratified epithelial cell | 3.57e-07 | 6 |
keratinizing barrier epithelial cell | 3.57e-07 | 6 |
epithelial fate stem cell | 3.57e-07 | 6 |
stratified epithelial stem cell | 3.57e-07 | 6 |
surface ectodermal cell | 3.57e-07 | 6 |
chorionic membrane mesenchymal stem cell | 4.99e-07 | 3 |
protein secreting cell | 7.17e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.09e-28 | 14 |
membranous layer | 2.09e-28 | 14 |
extraembryonic structure | 9.77e-16 | 24 |
chorion | 2.91e-15 | 7 |
amnion | 8.39e-15 | 7 |
urothelium | 5.89e-14 | 5 |
oral opening | 1.58e-13 | 22 |
gingival epithelium | 5.80e-13 | 3 |
somatic layer of lateral plate mesoderm | 6.42e-13 | 8 |
mouth | 2.35e-12 | 29 |
stomodeum | 2.35e-12 | 29 |
orifice | 1.19e-11 | 36 |
transitional epithelium | 1.21e-11 | 6 |
head | 2.53e-11 | 56 |
endoderm-derived structure | 4.26e-11 | 160 |
endoderm | 4.26e-11 | 160 |
presumptive endoderm | 4.26e-11 | 160 |
organ component layer | 6.65e-11 | 66 |
surface structure | 1.10e-10 | 99 |
anterior region of body | 6.18e-10 | 62 |
craniocervical region | 6.18e-10 | 62 |
placenta | 6.41e-10 | 4 |
allantois | 6.41e-10 | 4 |
subdivision of head | 1.41e-09 | 49 |
mouth mucosa | 7.34e-08 | 13 |
respiratory system | 1.06e-07 | 74 |
egg chorion | 4.99e-07 | 3 |
saliva-secreting gland | 7.17e-07 | 6 |
gland of oral region | 7.17e-07 | 6 |
gland of foregut | 7.17e-07 | 6 |
oral gland | 7.17e-07 | 6 |
oral cavity | 7.17e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.25e-09 | 14 |