FFCP PHASE1:Hg19::chr12:122018409..122018432,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84678 | |EntrezGene=84678 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13610 | |HGNC=13610 | ||
|TSSclassifier=strong | |||
|UniProt=A8MRS1 | |UniProt=A8MRS1 | ||
|association_with_transcript=-45bp_to_ENST00000377069,NM_001005366,uc001uas.2_5end | |association_with_transcript=-45bp_to_ENST00000377069,NM_001005366,uc001uas.2_5end | ||
|cluster_id=chr12:122018409..122018432,- | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_12_at_KDM2B_5end | |description=CAGE_peak_12_at_KDM2B_5end | ||
|id=chr12:122018409..122018432,- | |id=chr12:122018409..122018432,- | ||
|ontology_enrichment_celltype=CL:0000542!7.17e-09!53;CL:0000051!7.17e-09!53;CL:0000838!1.31e-08!52;CL:0000084!5.20e-08!25;CL:0000827!5.20e-08!25 | |ontology_enrichment_celltype=CL:0000542!7.17e-09!53;CL:0000051!7.17e-09!53;CL:0000838!1.31e-08!52;CL:0000084!5.20e-08!25;CL:0000827!5.20e-08!25 | ||
|ontology_enrichment_celltype_v019=CL:0002322;1.49e-35;5!CL:0000039;9.67e-17;7!CL:0000586;9.67e-17;7!CL:0002321;1.33e-16;15!CL:0000540;2.18e-11;6!CL:0000404;2.18e-11;6!CL:0000148;5.47e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.08e-35,5;CL:0000039,7.61e-17,7;CL:0000586,7.61e-17,7;CL:0000540,2.55e-11,6;CL:0000031,2.55e-11,6;CL:0000404,2.55e-11,6;CL:0000047,1.32e-08,8;CL:0000148,5.15e-07,10;CL:0000541,5.15e-07,10 | |||
|ontology_enrichment_development_v019=UBERON:0009117;8.25e-18;10!UBERON:0005564;8.25e-18;10!CL:0000031;2.18e-11;6 | |||
|ontology_enrichment_disease=DOID:162!3.76e-08!235;DOID:14566!6.79e-08!239;DOID:3095!8.32e-07!22;DOID:2994!8.32e-07!22 | |ontology_enrichment_disease=DOID:162!3.76e-08!235;DOID:14566!6.79e-08!239;DOID:3095!8.32e-07!22;DOID:2994!8.32e-07!22 | ||
|ontology_enrichment_disease_v019=DOID:3095;1.98e-19;22!DOID:2994;1.98e-19;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.80e-19,22;DOID:2994,1.80e-19,22 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;1.14e-14;8!UBERON:0003135;1.05e-10;11!UBERON:0000991;2.28e-08;21!UBERON:0000922;6.98e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,9.24e-15,8;UBERON:0003135,9.01e-11,11;UBERON:0000991,2.10e-08,21;UBERON:0009196,2.10e-08,21;UBERON:0009117,2.10e-08,21;UBERON:0005564,2.10e-08,21;UBERON:0004176,5.21e-08,22 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0.602694528023977,0,0.487932798790507,0,0,0,0.286235987131057,0.547497700291537,0.125542639594803,0.458480434487708,0.328402357799783,0.708397031823113,0,0,0.309632246632152,0,0,0,0,0.284338464974843,0.293600439334847,0.553995408531877,0.401088894940283,0.434021741431704,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0.290209238628584,0.56738522469114,1.24564449799115,0,0,0,0.605399502633369,0,0,0,0.425208599930087,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,1.32171328579026,0,0.263384084775077,0.196709770113833,1.57204305099666,1.02800749499755,0.167186495390678,0.32592226663359,0.473447805734733,0,0.111410456885174,0.294605907474837,0.886135578334485,0,0.384273959177026,0,0.164437904603676,0.829050053357545,0,0.14828656316206,0.535081656179426,1.04535523804977,0.113309342697566,0.766440987203842,0.34362744548263,1.26509846009751,0.318565414324097,0,0.950452044448374,0.301150238155546,0.511946444617674,0,0,0,0.201606743224732,1.60464117470104,0.144824403882799,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225222960966644,0,0,0,0,0,0,0,0,0.132409180813219,0.286836620748814,0.354668382198357,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0.23486899728753,0,0,0,0,0,0,0,0,0,0,0.250237039743928,0,0,0,0,0,0,0.213557388818567,0,0.300091096084402,0,0,0,0.337552664482532,0.0974370051611986,0,0,0,0,0.10075209822764,0,0.193260853163297,0,0.286804595389004,4.39105342066543,2.65059536642971,5.34492137199785,2.69518743039963,4.79409616663694,1.45990943630332,0,0,0,0,0,0.473227200159376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0.144366447761074,0,0,0.790204397959275,0.858486162094873,0.246217006087397,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.112131084345361,0.43596006883328,0.22001485746285,0,0,0,0.531876233169741,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0.179060963239896,0.112085143993527,0.394061520403854,0.431255149719035,0.898401253958239,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0.178428988797162,0,0.117141414992713,0,0,0,0,0,0,0,0,0.413536052245775,0.862856803274467,0.320182673410333,0,0,0.604780586659361,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0.232420756919918,0,0.40101294060657,0.0920809889358963,0,0.364182336013434,0,0,0,0,0,0,0,0,0.431831832204279,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0,0.27470839445503,0,0,0,0,0,0,0.15350367472613,0.137836572484531,0,0,0,0,0,0.384380134730212,0.127612712494584,0.10115778085555,0.464845549297286,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0.243713489631284,1.05650146756755,0,0.141405431953713,0,0,0,0,0,0,0,0,0.281695602532241,0,0,0,0,0,0,0.379473173765715,0.349934720244983,0,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0.79312517629427,0.534120355637366,0,0.490080431962063,0.185803175125719,0.432807638929335,0.355709216742071,0.318852545457645,0.59873811429845,0,1.05836791361941,0,0,0.228234679033192,0,0,0,0,0,0,0,0.307240764308458,0,0,0.19538809540204,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0,0,0.222617410045812,0.16480387422676,0,0,0.276283915531148,0.503865495708552,0,0.246169610922139,0,0,0,0.511572370226872,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0.0874599999961957,0,0.1137934482855,0.254253650292766,0.236387681767936,0,0,0.347249989866585,0,0,0,0.442317039724898,0,0,0,0,0,0,0.23056390438806,0.179515288819544,0.434589487688032,0,0.0915975934018623,0,2.04386596391473,0,0,0.225595660617181,0,0,0,0,0,0,0.424059214301822,0.216388639742091,0,0.0884575645033392,0,0,0.247127877893006,0.313265848516366,0.067401132980677,0,0,0.364909578431332,0,0,0,0,0,0,0.751617097072463,0.518440956986236,0,0,0.313932918407225,0,0,0.138674673013139,0,0,0.174118413160805,0.17472666824203,0,0.19351266257817,0.292357268344742,0.328461828212837,0,0.176512253383001,0,0,0.19871461170299,0,0,0.0801588202515337,0,0,0,0.114536596165916,0.171594997861965,0,0,0,0,0,0,0.288950589901519,0,0.136905378891993,0,0,0.262887354279314,0,0,0,0,0.429226048136571,0.223171457441873,0,0,1.16495949527454,0.0787831823072236,0,0.26961417541674,0,0.423366660328922,0,0,4.34033500855552,4.12618309791701,4.15440338029185,0.449947783103001,0,0.0607495566580247,0.335434687599266,0,0.0524545881349981,0,0,0,0,0,0.25426853765475,0.542999601753713,0,0,0,0.082092520749339,0.340776043570843,0.339936274560377,0,0,0,0,0,0,0,0,0,0,0.395223263795889,0,1.27668251554036,0,0,0,0,0.314108192500469,0.886068179966986,0,0.250381861413,0,0.110929051536852,0.124192805882767,0.276697269872462,0,0,0,0,0,0.28984205722165,0,0.233713309847224,0,0,0,0.889811221596536,0,0.151230923763239,0.15543720058278,0,0.159296767163702,0.449803112163605,0.155262956876259,0,0,0,0.150257608997218,0,0,0,0.322231671127465,0.464033759878494,0,0,0.343395705182793,0,0,0,0,0,0.226705925512272,0,0,0,0.308801447160972,0.219284049578707,0,0,0,0.256241518587947,0,0,0.138258436151731,0.584580926518165,0.531459361253452,0,0,0.737318726261158,0,0.19998739585493,0,0.172214979660816,0,0.184105950251841,0,0,0,0,0,0.218419276384028,0.169732529954025,0.637724760305049,0.123935764259002,2.23457967189298,0,0.157723490002507,0,0,0,0,0,0,0.205116364240755,0,0.0691572524642179,0,0,0.196295437002051,0,0.183428598521679,0.346576998451015,0.762764190934334,0,0.397832444232549,0,0.40341013740704,0,0.261906694481422,0,0,0.0675375846183947,0,0.206686796501184,0,0,0,0,0,0.127762427639595,0,0,0.606965604236632,0,0,0.230467975111559,0.342976018874837,0,0,0.236387681767936,0.333694205676207,0,0.157115589916002,0.280272163313789,0,0,0,0,0.47404083519818,0.929931402945002,0,0,0.207216164163037,0,0.691259661814092,0,0,0,0,0,0.62041277132864,0,0,0,0,0,0.102662806856247,0,0,0.935757853848423,0.397901550322736,0.118920090777569,0.5647304101948,0,0.603851374266694,0.0771741581079447,0,0,0,0.235676547101626,0,0,0,0,0,0.0644578879735772,0.799529247399431,0.178553938605658,0,0.0802413666891683,0,0.458729283404541,0.143339583151451,0.473314686579554,0,0,0,0,0.462175628631418,0,2.14482922219634,2.07604586731021,1.26698501011437,6.01734095477692,4.80991329478009,2.84874188558019,5.51556586443225,0.0757786982182394,0,0,0.103432995861895,0,0,0.258355639344024,0.496597714366863,0.112131862580613,0,0,0,0.342233301085281,0,0,0,0.162806537221949,0.320182037633146,0,0.0898252021065869,0,0.122241444182866,0,0,0,0 | |phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0.602694528023977,0,0.487932798790507,0,0,0,0.286235987131057,0.547497700291537,0.125542639594803,0.458480434487708,0.328402357799783,0.708397031823113,0,0,0.309632246632152,0,0,0,0,0.284338464974843,0.293600439334847,0.553995408531877,0.401088894940283,0.434021741431704,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0.290209238628584,0.56738522469114,1.24564449799115,0,0,0,0.605399502633369,0,0,0,0.425208599930087,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,1.32171328579026,0,0.263384084775077,0.196709770113833,1.57204305099666,1.02800749499755,0.167186495390678,0.32592226663359,0.473447805734733,0,0.111410456885174,0.294605907474837,0.886135578334485,0,0.384273959177026,0,0.164437904603676,0.829050053357545,0,0.14828656316206,0.535081656179426,1.04535523804977,0.113309342697566,0.766440987203842,0.34362744548263,1.26509846009751,0.318565414324097,0,0.950452044448374,0.301150238155546,0.511946444617674,0,0,0,0.201606743224732,1.60464117470104,0.144824403882799,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225222960966644,0,0,0,0,0,0,0,0,0.132409180813219,0.286836620748814,0.354668382198357,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0.23486899728753,0,0,0,0,0,0,0,0,0,0,0.250237039743928,0,0,0,0,0,0,0.213557388818567,0,0.300091096084402,0,0,0,0.337552664482532,0.0974370051611986,0,0,0,0,0.10075209822764,0,0.193260853163297,0,0.286804595389004,4.39105342066543,2.65059536642971,5.34492137199785,2.69518743039963,4.79409616663694,1.45990943630332,0,0,0,0,0,0.473227200159376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0.144366447761074,0,0,0.790204397959275,0.858486162094873,0.246217006087397,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.112131084345361,0.43596006883328,0.22001485746285,0,0,0,0.531876233169741,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0.179060963239896,0.112085143993527,0.394061520403854,0.431255149719035,0.898401253958239,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0.178428988797162,0,0.117141414992713,0,0,0,0,0,0,0,0,0.413536052245775,0.862856803274467,0.320182673410333,0,0,0.604780586659361,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0.232420756919918,0,0.40101294060657,0.0920809889358963,0,0.364182336013434,0,0,0,0,0,0,0,0,0.431831832204279,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0,0.27470839445503,0,0,0,0,0,0,0.15350367472613,0.137836572484531,0,0,0,0,0,0.384380134730212,0.127612712494584,0.10115778085555,0.464845549297286,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0.243713489631284,1.05650146756755,0,0.141405431953713,0,0,0,0,0,0,0,0,0.281695602532241,0,0,0,0,0,0,0.379473173765715,0.349934720244983,0,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0.79312517629427,0.534120355637366,0,0.490080431962063,0.185803175125719,0.432807638929335,0.355709216742071,0.318852545457645,0.59873811429845,0,1.05836791361941,0,0,0.228234679033192,0,0,0,0,0,0,0,0.307240764308458,0,0,0.19538809540204,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0,0,0.222617410045812,0.16480387422676,0,0,0.276283915531148,0.503865495708552,0,0.246169610922139,0,0,0,0.511572370226872,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0.0874599999961957,0,0.1137934482855,0.254253650292766,0.236387681767936,0,0,0.347249989866585,0,0,0,0.442317039724898,0,0,0,0,0,0,0.23056390438806,0.179515288819544,0.434589487688032,0,0.0915975934018623,0,2.04386596391473,0,0,0.225595660617181,0,0,0,0,0,0,0.424059214301822,0.216388639742091,0,0.0884575645033392,0,0,0.247127877893006,0.313265848516366,0.067401132980677,0,0,0.364909578431332,0,0,0,0,0,0,0.751617097072463,0.518440956986236,0,0,0.313932918407225,0,0,0.138674673013139,0,0,0.174118413160805,0.17472666824203,0,0.19351266257817,0.292357268344742,0.328461828212837,0,0.176512253383001,0,0,0.19871461170299,0,0,0.0801588202515337,0,0,0,0.114536596165916,0.171594997861965,0,0,0,0,0,0,0.288950589901519,0,0.136905378891993,0,0,0.262887354279314,0,0,0,0,0.429226048136571,0.223171457441873,0,0,1.16495949527454,0.0787831823072236,0,0.26961417541674,0,0.423366660328922,0,0,4.34033500855552,4.12618309791701,4.15440338029185,0.449947783103001,0,0.0607495566580247,0.335434687599266,0,0.0524545881349981,0,0,0,0,0,0.25426853765475,0.542999601753713,0,0,0,0.082092520749339,0.340776043570843,0.339936274560377,0,0,0,0,0,0,0,0,0,0,0.395223263795889,0,1.27668251554036,0,0,0,0,0.314108192500469,0.886068179966986,0,0.250381861413,0,0.110929051536852,0.124192805882767,0.276697269872462,0,0,0,0,0,0.28984205722165,0,0.233713309847224,0,0,0,0.889811221596536,0,0.151230923763239,0.15543720058278,0,0.159296767163702,0.449803112163605,0.155262956876259,0,0,0,0.150257608997218,0,0,0,0.322231671127465,0.464033759878494,0,0,0.343395705182793,0,0,0,0,0,0.226705925512272,0,0,0,0.308801447160972,0.219284049578707,0,0,0,0.256241518587947,0,0,0.138258436151731,0.584580926518165,0.531459361253452,0,0,0.737318726261158,0,0.19998739585493,0,0.172214979660816,0,0.184105950251841,0,0,0,0,0,0.218419276384028,0.169732529954025,0.637724760305049,0.123935764259002,2.23457967189298,0,0.157723490002507,0,0,0,0,0,0,0.205116364240755,0,0.0691572524642179,0,0,0.196295437002051,0,0.183428598521679,0.346576998451015,0.762764190934334,0,0.397832444232549,0,0.40341013740704,0,0.261906694481422,0,0,0.0675375846183947,0,0.206686796501184,0,0,0,0,0,0.127762427639595,0,0,0.606965604236632,0,0,0.230467975111559,0.342976018874837,0,0,0.236387681767936,0.333694205676207,0,0.157115589916002,0.280272163313789,0,0,0,0,0.47404083519818,0.929931402945002,0,0,0.207216164163037,0,0.691259661814092,0,0,0,0,0,0.62041277132864,0,0,0,0,0,0.102662806856247,0,0,0.935757853848423,0.397901550322736,0.118920090777569,0.5647304101948,0,0.603851374266694,0.0771741581079447,0,0,0,0.235676547101626,0,0,0,0,0,0.0644578879735772,0.799529247399431,0.178553938605658,0,0.0802413666891683,0,0.458729283404541,0.143339583151451,0.473314686579554,0,0,0,0,0.462175628631418,0,2.14482922219634,2.07604586731021,1.26698501011437,6.01734095477692,4.80991329478009,2.84874188558019,5.51556586443225,0.0757786982182394,0,0,0.103432995861895,0,0,0.258355639344024,0.496597714366863,0.112131862580613,0,0,0,0.342233301085281,0,0,0,0.162806537221949,0.320182037633146,0,0.0898252021065869,0,0.122241444182866,0,0,0,0 | ||
|short_description=p12@KDM2B | |short_description=p12@KDM2B | ||
}} | }} |
Latest revision as of 22:14, 16 September 2015
Short description: | p12@KDM2B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_KDM2B_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | -45bp_to_ENST00000377069, NM_001005366, uc001uas.2_5end |
EntrezGene: | KDM2B |
HGNC: | 13610 |
UniProt: | A8MRS1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.08e-35 | 5 |
germ line cell | 7.61e-17 | 7 |
germ cell | 7.61e-17 | 7 |
neuron | 2.55e-11 | 6 |
neuroblast | 2.55e-11 | 6 |
electrically signaling cell | 2.55e-11 | 6 |
neuronal stem cell | 1.32e-08 | 8 |
melanocyte | 5.15e-07 | 10 |
melanoblast | 5.15e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
testis | 9.24e-15 | 8 |
male reproductive organ | 9.01e-11 | 11 |
gonad | 2.10e-08 | 21 |
indifferent external genitalia | 2.10e-08 | 21 |
indifferent gonad | 2.10e-08 | 21 |
gonad primordium | 2.10e-08 | 21 |
external genitalia | 5.21e-08 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.80e-19 | 22 |
germ cell cancer | 1.80e-19 | 22 |