FFCP PHASE1:Hg19::chr13:32889605..32889653,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=675 | |EntrezGene=675 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1101 | |HGNC=1101 | ||
|TSSclassifier=strong | |||
|UniProt=P51587,E9PIQ1 | |UniProt=P51587,E9PIQ1 | ||
|association_with_transcript=0bp_to_ENST00000380152,ENST00000530893,ENST00000544455,NM_000059,uc001uua.1,uc001uub.1_5end | |association_with_transcript=0bp_to_ENST00000380152,ENST00000530893,ENST00000544455,NM_000059,uc001uua.1,uc001uub.1_5end | ||
|cluster_id=chr13:32889605..32889653,+ | |||
|description=CAGE_peak_1_at_BRCA2_5end | |description=CAGE_peak_1_at_BRCA2_5end | ||
|id=chr13:32889605..32889653,+ | |id=chr13:32889605..32889653,+ | ||
|ontology_enrichment_celltype=CL:0000037!1.49e-19!172;CL:0000566!1.49e-19!172;CL:0002032!3.82e-18!165;CL:0000837!3.82e-18!165;CL:0000988!1.00e-17!182;CL:0000763!4.98e-14!112;CL:0000049!4.98e-14!112;CL:0000012!1.52e-10!682;CL:0000548!4.08e-10!679;CL:0000004!4.08e-10!679;CL:0000255!4.08e-10!679;CL:0000738!6.64e-10!140;CL:0002031!8.77e-10!124;CL:0000063!2.79e-08!578;CL:0002087!3.28e-08!119;CL:0000219!2.47e-07!390;CL:0000945!8.29e-07!24;CL:0000826!8.29e-07!24 | |ontology_enrichment_celltype=CL:0000037!1.49e-19!172;CL:0000566!1.49e-19!172;CL:0002032!3.82e-18!165;CL:0000837!3.82e-18!165;CL:0000988!1.00e-17!182;CL:0000763!4.98e-14!112;CL:0000049!4.98e-14!112;CL:0000012!1.52e-10!682;CL:0000548!4.08e-10!679;CL:0000004!4.08e-10!679;CL:0000255!4.08e-10!679;CL:0000738!6.64e-10!140;CL:0002031!8.77e-10!124;CL:0000063!2.79e-08!578;CL:0002087!3.28e-08!119;CL:0000219!2.47e-07!390;CL:0000945!8.29e-07!24;CL:0000826!8.29e-07!24 | ||
|ontology_enrichment_celltype_v019=CL:0000945;6.47e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,6.14e-20,168;CL:0002032,1.63e-18,161;CL:0000837,1.63e-18,161;CL:0000988,3.01e-18,177;CL:0000763,2.70e-14,108;CL:0000049,2.70e-14,108;CL:0000738,4.06e-10,136;CL:0002031,5.78e-10,120;CL:0002087,2.34e-08,115;CL:0000219,3.44e-07,386;CL:0000945,7.71e-07,24;CL:0000826,7.71e-07,24 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.20e-41!235;DOID:14566!2.65e-40!239;DOID:0050686!2.69e-21!137;DOID:0050687!2.82e-21!143;DOID:2531!3.43e-19!51;DOID:0060083!3.43e-19!51;DOID:1240!2.14e-15!39;DOID:305!1.38e-14!106;DOID:8692!4.97e-12!31 | |ontology_enrichment_disease=DOID:162!1.20e-41!235;DOID:14566!2.65e-40!239;DOID:0050686!2.69e-21!137;DOID:0050687!2.82e-21!143;DOID:2531!3.43e-19!51;DOID:0060083!3.43e-19!51;DOID:1240!2.14e-15!39;DOID:305!1.38e-14!106;DOID:8692!4.97e-12!31 | ||
|ontology_enrichment_disease_v019=DOID:1240;1.82e-12;39!DOID:2531;5.09e-12;51!DOID:0060083;5.09e-12;51!DOID:8692;7.73e-12;31 | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.59e-41,235;DOID:14566,3.08e-40,239;DOID:0050686,4.19e-21,137;DOID:0050687,4.25e-21,143;DOID:2531,2.68e-19,51;DOID:0060083,2.68e-19,51;DOID:1240,1.76e-15,39;DOID:305,1.43e-14,106;DOID:8692,4.29e-12,31 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p1@BRCA2 | |short_description=p1@BRCA2 | ||
}} | }} |
Latest revision as of 03:59, 17 September 2015
Short description: | p1@BRCA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_BRCA2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000380152, ENST00000530893, ENST00000544455, NM_000059, uc001uua.1, uc001uub.1_5end |
EntrezGene: | BRCA2 |
HGNC: | 1101 |
UniProt: | P51587E9PIQ1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 6.14e-20 | 168 |
hematopoietic oligopotent progenitor cell | 1.63e-18 | 161 |
hematopoietic multipotent progenitor cell | 1.63e-18 | 161 |
hematopoietic cell | 3.01e-18 | 177 |
myeloid cell | 2.70e-14 | 108 |
common myeloid progenitor | 2.70e-14 | 108 |
leukocyte | 4.06e-10 | 136 |
hematopoietic lineage restricted progenitor cell | 5.78e-10 | 120 |
nongranular leukocyte | 2.34e-08 | 115 |
motile cell | 3.44e-07 | 386 |
lymphocyte of B lineage | 7.71e-07 | 24 |
pro-B cell | 7.71e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.59e-41 | 235 |
disease of cellular proliferation | 3.08e-40 | 239 |
organ system cancer | 4.19e-21 | 137 |
cell type cancer | 4.25e-21 | 143 |
hematologic cancer | 2.68e-19 | 51 |
immune system cancer | 2.68e-19 | 51 |
leukemia | 1.76e-15 | 39 |
carcinoma | 1.43e-14 | 106 |
myeloid leukemia | 4.29e-12 | 31 |