FFCP PHASE1:Hg19::chr14:36990416..36990438,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7080 | |EntrezGene=7080 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11825 | |HGNC=11825 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-62bp_to_ENST00000518149_5end | |association_with_transcript=-62bp_to_ENST00000518149_5end | ||
|cluster_id=chr14:36990416..36990438,- | |||
|coexpression_cluster_id=C113 | |||
|description=CAGE_peak_4_at_NKX2-1_5end | |description=CAGE_peak_4_at_NKX2-1_5end | ||
|id=chr14:36990416..36990438,- | |id=chr14:36990416..36990438,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0007123;1.59e-27;5 | |||
|ontology_enrichment_disease=DOID:3112!6.31e-10!1;DOID:3905!5.52e-09!9;DOID:3908!1.15e-07!5 | |ontology_enrichment_disease=DOID:3112!6.31e-10!1;DOID:3905!5.52e-09!9;DOID:3908!1.15e-07!5 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002046!1.11e-27!5;UBERON:0004117!1.11e-27!5;UBERON:0007689!1.11e-27!5;UBERON:0007123!1.11e-27!5;UBERON:0003091!1.11e-27!5;UBERON:0000341!2.44e-18!2;UBERON:0003127!1.88e-17!2;UBERON:0005178!8.50e-15!34;UBERON:0002224!8.50e-15!34;UBERON:0005181!2.41e-14!35;UBERON:0002048!1.93e-13!22;UBERON:0000117!1.93e-13!22;UBERON:0000171!1.93e-13!22;UBERON:0000170!1.93e-13!22;UBERON:0005597!1.93e-13!22;UBERON:0000118!1.93e-13!22;UBERON:0008947!3.94e-13!38;UBERON:0003258!3.94e-13!38;UBERON:0009722!1.03e-12!11;UBERON:0007690!1.03e-12!11;UBERON:0005911!1.15e-10!82;UBERON:0002171!4.87e-10!1;UBERON:0006518!4.87e-10!1;UBERON:0008949!4.87e-10!1;UBERON:0000101!4.87e-10!1;UBERON:0002167!4.87e-10!1;UBERON:0008814!2.30e-09!15;UBERON:0000915!2.59e-09!52;UBERON:0000065!4.06e-09!53;UBERON:0005153!8.55e-08!37;UBERON:0005157!2.37e-07!51;UBERON:0001007!7.33e-07!155;UBERON:0001555!7.33e-07!155;UBERON:0007026!7.33e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0000341;3.96e-66;2!UBERON:0002171;5.05e-34;1!UBERON:0006518;5.05e-34;1!UBERON:0008949;5.05e-34;1!UBERON:0000101;5.05e-34;1!UBERON:0002167;5.05e-34;1!UBERON:0002046;1.59e-27;5!UBERON:0000974;6.78e-23;6!UBERON:0002048;5.91e-07;22!UBERON:0000117;5.91e-07;22!UBERON:0000171;5.91e-07;22!UBERON:0000170;5.91e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000341,3.96e-66,2;UBERON:0002171,5.05e-34,1;UBERON:0006518,5.05e-34,1;UBERON:0008949,5.05e-34,1;UBERON:0000101,5.05e-34,1;UBERON:0002167,5.05e-34,1;UBERON:0002046,1.59e-27,5;UBERON:0004117,1.59e-27,5;UBERON:0007689,1.59e-27,5;UBERON:0007123,1.59e-27,5;UBERON:0003091,1.59e-27,5;UBERON:0000974,3.47e-14,10;UBERON:0009722,4.00e-13,11;UBERON:0007690,4.00e-13,11;UBERON:0008814,2.09e-08,18;UBERON:0005911,5.36e-07,82;UBERON:0002048,5.91e-07,22;UBERON:0000117,5.91e-07,22;UBERON:0000171,5.91e-07,22;UBERON:0000170,5.91e-07,22;UBERON:0005597,5.91e-07,22;UBERON:0000118,5.91e-07,22 | |||
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|short_description=p4@NKX2-1 | |short_description=p4@NKX2-1 | ||
}} | }} |
Latest revision as of 22:41, 19 September 2015
Short description: | p4@NKX2-1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_NKX2-1_5end |
Coexpression cluster: | C113_thyroid_throat_lung_lymph_small_colon_trachea |
Association with transcript: | -62bp_to_ENST00000518149_5end |
EntrezGene: | NKX2-1 |
HGNC: | 11825 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
throat | 3.96e-66 | 2 |
lower lobe of right lung | 5.05e-34 | 1 |
right lung lobe | 5.05e-34 | 1 |
lower lobe of lung | 5.05e-34 | 1 |
lobe of lung | 5.05e-34 | 1 |
right lung | 5.05e-34 | 1 |
thyroid gland | 1.59e-27 | 5 |
pharyngeal pouch | 1.59e-27 | 5 |
thyroid diverticulum | 1.59e-27 | 5 |
pharyngeal pouch 2 | 1.59e-27 | 5 |
thyroid primordium | 1.59e-27 | 5 |
neck | 3.47e-14 | 10 |
entire pharyngeal arch endoderm | 4.00e-13 | 11 |
early pharyngeal endoderm | 4.00e-13 | 11 |
pharyngeal arch system | 2.09e-08 | 18 |
endo-epithelium | 5.36e-07 | 82 |
lung | 5.91e-07 | 22 |
respiratory tube | 5.91e-07 | 22 |
respiration organ | 5.91e-07 | 22 |
pair of lungs | 5.91e-07 | 22 |
lung primordium | 5.91e-07 | 22 |
lung bud | 5.91e-07 | 22 |