FFCP PHASE1:Hg19::chr11:2016471..2016492,+: Difference between revisions
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|id=chr11:2016471..2016492,+
|short_description=p3@RPSA
|description=CAGE_peak_3_at_RPSA_5end
|association_with_transcript=65bp_to_BC010054,BC010055_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3921 | |EntrezGene=3921 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=6502 | |HGNC=6502 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=65bp_to_BC010054,BC010055_5end | |||
|cluster_id=chr11:2016471..2016492,+ | |||
|coexpression_cluster_id=C227 | |||
|description=CAGE_peak_3_at_RPSA_5end | |||
|id=chr11:2016471..2016492,+ | |||
|ontology_enrichment_celltype=CL:0000188!7.53e-11!9;CL:0000515!1.64e-07!4;CL:0000349!3.18e-07!3;CL:0002577!3.18e-07!3;CL:0002541!7.18e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000349;4.30e-29;19!CL:0002577;2.39e-15;3!CL:0002536;1.34e-10;2!CL:0002537;1.58e-09;5!CL:0002541;1.32e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,4.26e-29,19;CL:0002577,2.23e-15,3;CL:0002536,1.38e-10,2;CL:0002537,1.54e-09,5;CL:0002541,1.38e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.04e-08;29 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!2.26e-19!14;UBERON:0000158!2.26e-19!14;UBERON:0001557!9.32e-19!19;UBERON:0001737!8.28e-17!9;UBERON:0003124!5.85e-14!7;UBERON:0000478!7.74e-14!24;UBERON:0000077!8.63e-09!130;UBERON:0001987!9.49e-09!4;UBERON:0004340!9.49e-09!4;UBERON:0003104!9.95e-09!238;UBERON:0009142!9.95e-09!238;UBERON:0001041!3.07e-08!98;UBERON:0000072!3.66e-08!46;UBERON:0000305!1.32e-07!7;UBERON:0004923!5.25e-07!57;UBERON:0000476!7.18e-07!3;UBERON:0000920!7.18e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;8.89e-31;9!UBERON:0001557;8.89e-31;9!UBERON:0000478;8.04e-27;24!UBERON:0005631;2.76e-23;10!UBERON:0000158;2.76e-23;10!UBERON:0000305;2.25e-17;7!UBERON:0001987;1.25e-11;4!UBERON:0000072;6.46e-08;37!UBERON:0003124;1.32e-07;3!UBERON:0000920;1.32e-07;3!UBERON:0001723;4.00e-07;3!UBERON:0001033;4.00e-07;3!UBERON:0001134;6.66e-07;16!UBERON:0002036;6.66e-07;16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,3.19e-33,14;UBERON:0000158,3.19e-33,14;UBERON:0001737,4.79e-31,9;UBERON:0000478,8.17e-27,24;UBERON:0001557,4.43e-22,19;UBERON:0003124,1.70e-17,7;UBERON:0000305,2.22e-17,7;UBERON:0004871,3.58e-15,8;UBERON:0001987,1.19e-11,4;UBERON:0004340,1.19e-11,4;UBERON:0000072,1.77e-09,47;UBERON:0001041,1.95e-08,87;UBERON:0000065,5.57e-08,54;UBERON:0004119,1.08e-07,160;UBERON:0000925,1.08e-07,160;UBERON:0006595,1.08e-07,160;UBERON:0000920,1.38e-07,3;UBERON:0004921,3.36e-07,118;UBERON:0001723,4.01e-07,3;UBERON:0001033,4.01e-07,3;UBERON:0010056,4.01e-07,3 | |||
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| ||
|short_description=p3@RPSA | |||
}} | }} |
Latest revision as of 06:01, 17 September 2015
Short description: | p3@RPSA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RPSA_5end |
Coexpression cluster: | C227_chorionic_amniotic_Mesenchymal_Placental_gastric_diaphragm_tongue |
Association with transcript: | 65bp_to_BC010054, BC010055_5end |
EntrezGene: | RPSA |
HGNC: | 6502 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 4.26e-29 | 19 |
placental epithelial cell | 2.23e-15 | 3 |
amniotic epithelial cell | 1.38e-10 | 2 |
amnion mesenchymal stem cell | 1.54e-09 | 5 |
chorionic membrane mesenchymal stem cell | 1.38e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 3.19e-33 | 14 |
membranous layer | 3.19e-33 | 14 |
larynx | 4.79e-31 | 9 |
extraembryonic structure | 8.17e-27 | 24 |
upper respiratory tract | 4.43e-22 | 19 |
chorion | 1.70e-17 | 7 |
amnion | 2.22e-17 | 7 |
somatic layer of lateral plate mesoderm | 3.58e-15 | 8 |
placenta | 1.19e-11 | 4 |
allantois | 1.19e-11 | 4 |
segment of respiratory tract | 1.77e-09 | 47 |
foregut | 1.95e-08 | 87 |
respiratory tract | 5.57e-08 | 54 |
endoderm-derived structure | 1.08e-07 | 160 |
endoderm | 1.08e-07 | 160 |
presumptive endoderm | 1.08e-07 | 160 |
egg chorion | 1.38e-07 | 3 |
subdivision of digestive tract | 3.36e-07 | 118 |
tongue | 4.01e-07 | 3 |
gustatory system | 4.01e-07 | 3 |
future tongue | 4.01e-07 | 3 |