FFCP PHASE1:Hg19::chr15:33447055..33447064,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr15:33447055..33447064,- | |||
|coexpression_cluster_id=C897 | |||
|description=CAGE_peak_at_chr15:33447055..33447064,- | |description=CAGE_peak_at_chr15:33447055..33447064,- | ||
|id=chr15:33447055..33447064,- | |id=chr15:33447055..33447064,- | ||
|ontology_enrichment_celltype=CL:0002057!5.67e-11!42;CL:0000148!2.56e-10!10;CL:0000541!2.56e-10!10;CL:0000860!5.36e-10!45;CL:0002194!4.15e-09!63;CL:0000576!4.15e-09!63;CL:0000040!4.15e-09!63;CL:0000559!4.15e-09!63;CL:0002009!1.06e-08!65;CL:0000710!6.93e-08!20;CL:0000839!8.66e-08!70;CL:0000557!1.27e-07!71;CL:0000147!4.09e-07!14;CL:0000766!7.34e-07!76 | |ontology_enrichment_celltype=CL:0002057!5.67e-11!42;CL:0000148!2.56e-10!10;CL:0000541!2.56e-10!10;CL:0000860!5.36e-10!45;CL:0002194!4.15e-09!63;CL:0000576!4.15e-09!63;CL:0000040!4.15e-09!63;CL:0000559!4.15e-09!63;CL:0002009!1.06e-08!65;CL:0000710!6.93e-08!20;CL:0000839!8.66e-08!70;CL:0000557!1.27e-07!71;CL:0000147!4.09e-07!14;CL:0000766!7.34e-07!76 | ||
|ontology_enrichment_celltype_v019=CL:0000148;4.76e-23;10!CL:0000147;1.08e-16;14!CL:0000710;6.62e-12;20!CL:0002567;1.01e-09;3!CL:0000075;5.43e-09;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,4.76e-23,10;CL:0000541,4.76e-23,10;CL:0000147,1.08e-16,14;CL:0000710,6.62e-12,20;CL:0002567,1.01e-09,3;CL:0000333,1.12e-09,41;CL:0000075,5.43e-09,27;CL:0002077,2.89e-07,34;CL:0000133,6.26e-07,59 | |||
|ontology_enrichment_development_v019=UBERON:0006241;1.30e-09;3!UBERON:0003057;1.30e-09;3!UBERON:0003056;1.60e-09;3 | |||
|ontology_enrichment_disease=DOID:1909!5.32e-07!2 | |ontology_enrichment_disease=DOID:1909!5.32e-07!2 | ||
|ontology_enrichment_disease_v019=DOID:1909;7.77e-14;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,7.30e-14,2 | |||
|ontology_enrichment_uberon=UBERON:0001049!3.37e-21!57;UBERON:0005068!3.37e-21!57;UBERON:0006241!3.37e-21!57;UBERON:0007135!3.37e-21!57;UBERON:0002616!1.85e-16!59;UBERON:0000955!6.63e-16!69;UBERON:0006238!6.63e-16!69;UBERON:0003075!7.19e-16!86;UBERON:0007284!7.19e-16!86;UBERON:0005743!1.09e-15!86;UBERON:0001017!3.01e-15!82;UBERON:0002346!7.51e-15!90;UBERON:0000073!9.29e-15!94;UBERON:0001016!9.29e-15!94;UBERON:0002308!1.05e-13!9;UBERON:0000125!1.05e-13!9;UBERON:0002020!4.15e-13!34;UBERON:0003528!4.15e-13!34;UBERON:0003076!1.81e-12!15;UBERON:0003057!1.81e-12!15;UBERON:0002780!7.70e-12!41;UBERON:0001890!7.70e-12!41;UBERON:0006240!7.70e-12!41;UBERON:0002791!1.40e-11!33;UBERON:0003080!1.79e-11!42;UBERON:0002298!3.01e-11!8;UBERON:0001893!3.72e-11!34;UBERON:0003056!2.76e-10!61;UBERON:0009663!1.74e-09!7;UBERON:0004733!2.41e-09!12;UBERON:0002028!2.41e-09!12;UBERON:0007277!2.41e-09!12;UBERON:0001474!4.30e-09!86;UBERON:0006331!6.92e-09!3;UBERON:0000033!8.17e-09!123;UBERON:0004121!1.06e-08!169;UBERON:0001869!1.31e-08!32;UBERON:0004732!1.51e-08!13;UBERON:0000924!2.54e-08!173;UBERON:0006601!2.54e-08!173;UBERON:0002371!3.65e-08!80;UBERON:0000988!4.09e-08!3;UBERON:0000153!4.12e-08!129;UBERON:0007811!4.12e-08!129;UBERON:0007023!1.06e-07!115;UBERON:0002420!2.75e-07!9;UBERON:0007245!2.75e-07!9;UBERON:0010009!2.75e-07!9;UBERON:0010011!2.75e-07!9;UBERON:0000454!2.75e-07!9;UBERON:0004765!5.36e-07!101;UBERON:0001434!5.36e-07!101;UBERON:0001875!9.89e-07!2;UBERON:0006514!9.89e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0002038;8.64e-26;1!UBERON:0009661;8.64e-26;1!UBERON:0002950;8.64e-26;1!UBERON:0001891;8.64e-26;1!UBERON:0002240;1.30e-09;3!UBERON:0005174;1.30e-09;3!UBERON:0001137;1.30e-09;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002038,1.26e-25,1;UBERON:0009661,1.26e-25,1;UBERON:0002950,1.26e-25,1;UBERON:0001891,1.26e-25,1;UBERON:0009616,1.26e-25,1;UBERON:0010286,1.26e-25,1;UBERON:0002240,1.30e-09,3;UBERON:0005174,1.30e-09,3;UBERON:0001137,1.30e-09,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.401088894940283,0.217010870715852,0,0,0.257575567634187,0,0,0,0,0.411167888021826,0.309706370895104,0,0.512321413058201,0.236482229888585,0.344745680736619,0.645484683583826,0,0,0.545812300115692,0,0,0,0.639337125799041,0.329851300186716,0,0,0,0.56738522469114,0,0,0.521482918420201,0,0,0.368277635987565,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0.221729397462564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0.63497894292169,0.763976851116555,4.68869788840188,0,1.85089486865982,0.901029173531752,3.42991719156694,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300946099727719,0,0,0,0,0,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0.082509499920588,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0,0,0,0,0,0.62962469366128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274083849293502,0,0,0,0,0,0,0,0.114536596165916,0,0,0,0,0,0,0.101998217636322,1.15580235960608,0.600420288709789,0.547621515567972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.52893040697076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3755727921195,0,0.332787154610557,0.18628920882415,0,0,0.606596470166591,3.99651466962954,0,0,0,0,0,0,0.378806010550178,0,0,0,0,0,0,0,0,0,0,0.265841714557995,0,0,0,0,0,0,0,0,0.800055529326307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0.920529751259204,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0.205116364240755,0,0.0691572524642179,0,0,0,0,0,0,0.381382095467167,0,0.198916222116275,0,0.40341013740704,0,0,0,0,0,0.781078098613847,0.826747186004736,0,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0.0679697329768317,0.0657727735628491,0,0,0,0,0,0,0,0,1.85839014859306,0,0,0,0,0,0,0,0,0,0.170426809518315,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0.11294608203896,0,0,0,0,0,0,0,0.588925401344836,2.37637120261669,0,0,0,0,0,0,0,0,0,0,1.14671666521161,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413731983447581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.401088894940283,0.217010870715852,0,0,0.257575567634187,0,0,0,0,0.411167888021826,0.309706370895104,0,0.512321413058201,0.236482229888585,0.344745680736619,0.645484683583826,0,0,0.545812300115692,0,0,0,0.639337125799041,0.329851300186716,0,0,0,0.56738522469114,0,0,0.521482918420201,0,0,0.368277635987565,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0.221729397462564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0.63497894292169,0.763976851116555,4.68869788840188,0,1.85089486865982,0.901029173531752,3.42991719156694,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300946099727719,0,0,0,0,0,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0.082509499920588,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0,0,0,0,0,0.62962469366128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274083849293502,0,0,0,0,0,0,0,0.114536596165916,0,0,0,0,0,0,0.101998217636322,1.15580235960608,0.600420288709789,0.547621515567972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.52893040697076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3755727921195,0,0.332787154610557,0.18628920882415,0,0,0.606596470166591,3.99651466962954,0,0,0,0,0,0,0.378806010550178,0,0,0,0,0,0,0,0,0,0,0.265841714557995,0,0,0,0,0,0,0,0,0.800055529326307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0.920529751259204,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0.205116364240755,0,0.0691572524642179,0,0,0,0,0,0,0.381382095467167,0,0.198916222116275,0,0.40341013740704,0,0,0,0,0,0.781078098613847,0.826747186004736,0,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0.0679697329768317,0.0657727735628491,0,0,0,0,0,0,0,0,1.85839014859306,0,0,0,0,0,0,0,0,0,0.170426809518315,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0.11294608203896,0,0,0,0,0,0,0,0.588925401344836,2.37637120261669,0,0,0,0,0,0,0,0,0,0,1.14671666521161,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413731983447581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr15:33447055..33447064,- | |short_description=p@chr15:33447055..33447064,- | ||
}} | }} |
Latest revision as of 00:52, 25 July 2015
Short description: | p@chr15:33447055..33447064, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr15:33447055..33447064, - |
Coexpression cluster: | C897_melanoma_Melanocyte_CD14_Macrophage_retina_myxofibrosarcoma_Monocytederived |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 4.76e-23 | 10 |
melanoblast | 4.76e-23 | 10 |
pigment cell | 1.08e-16 | 14 |
neurecto-epithelial cell | 6.62e-12 | 20 |
light melanocyte | 1.01e-09 | 3 |
migratory neural crest cell | 1.12e-09 | 41 |
columnar/cuboidal epithelial cell | 5.43e-09 | 27 |
ecto-epithelial cell | 2.89e-07 | 34 |
neurectodermal cell | 6.26e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
substantia nigra | 1.26e-25 | 1 |
midbrain nucleus | 1.26e-25 | 1 |
regional part of midbrain | 1.26e-25 | 1 |
midbrain | 1.26e-25 | 1 |
presumptive midbrain | 1.26e-25 | 1 |
midbrain neural tube | 1.26e-25 | 1 |
spinal cord | 1.30e-09 | 3 |
dorsal region element | 1.30e-09 | 3 |
dorsum | 1.30e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
melanoma | 7.30e-14 | 2 |