FFCP PHASE1:Hg19::chr11:45825996..45826007,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr11:45825996..45826007,+
|short_description=p12@SLC35C1
|description=CAGE_peak_12_at_SLC35C1_5end
|association_with_transcript=39bp_to_ENST00000314134_5end
|...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55343 | |EntrezGene=55343 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20197 | |HGNC=20197 | ||
|TSSclassifier=strong | |||
|UniProt=Q96A29 | |UniProt=Q96A29 | ||
|association_with_transcript=39bp_to_ENST00000314134_5end | |||
|cluster_id=chr11:45825996..45826007,+ | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_12_at_SLC35C1_5end | |||
|id=chr11:45825996..45826007,+ | |||
|ontology_enrichment_celltype=CL:0000223!8.68e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000182;9.88e-09;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.00e-08,12 | |||
|ontology_enrichment_development_v019=UBERON:0009143;1.01e-11;1!UBERON:0006242;1.01e-11;1!UBERON:0007123;3.04e-09;5!UBERON:0009497;6.39e-08;13 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3112;1.01e-11;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3112,1.32e-11,1 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.58e-10!169;UBERON:0000925!1.58e-10!169;UBERON:0006595!1.58e-10!169;UBERON:0001007!5.44e-09!155;UBERON:0001555!5.44e-09!155;UBERON:0007026!5.44e-09!155;UBERON:0000161!1.24e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0002423;4.40e-15;25!UBERON:0002372;1.01e-11;1!UBERON:0001961;1.01e-11;1!UBERON:0001744;1.01e-11;1!UBERON:0001042;1.01e-11;1!UBERON:0001735;1.01e-11;1!UBERON:0002368;1.08e-10;33!UBERON:0002107;2.24e-09;19!UBERON:0006925;2.24e-09;19!UBERON:0002046;3.04e-09;5!UBERON:0000949;1.02e-07;43!UBERON:0002294;6.20e-07;7!UBERON:0001173;6.20e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0009497,4.99e-15,25;UBERON:0000015,4.99e-15,25;UBERON:0002423,4.99e-15,25;UBERON:0006235,4.99e-15,25;UBERON:0004161,4.99e-15,25;UBERON:0003929,9.64e-15,54;UBERON:0008835,3.28e-12,22;UBERON:0003894,3.28e-12,22;UBERON:0002372,9.61e-12,1;UBERON:0001961,9.61e-12,1;UBERON:0001744,9.61e-12,1;UBERON:0001735,9.61e-12,1;UBERON:0009854,1.13e-11,23;UBERON:0004119,9.53e-11,160;UBERON:0000925,9.53e-11,160;UBERON:0006595,9.53e-11,160;UBERON:0007499,9.90e-11,25;UBERON:0002368,1.31e-10,35;UBERON:0009856,2.59e-10,26;UBERON:0001007,2.81e-10,145;UBERON:0001555,2.81e-10,145;UBERON:0007026,2.81e-10,145;UBERON:0002107,2.24e-09,19;UBERON:0006925,2.24e-09,19;UBERON:0008836,2.24e-09,19;UBERON:0005911,2.61e-09,82;UBERON:0002046,3.04e-09,5;UBERON:0004117,3.04e-09,5;UBERON:0007689,3.04e-09,5;UBERON:0007123,3.04e-09,5;UBERON:0003091,3.04e-09,5;UBERON:0002530,3.43e-08,59;UBERON:0000949,3.72e-08,45;UBERON:0004921,1.52e-07,118;UBERON:0001041,6.86e-07,87 | |||
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Latest revision as of 01:21, 18 September 2015
Short description: | p12@SLC35C1 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_SLC35C1_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 39bp_to_ENST00000314134_5end |
EntrezGene: | SLC35C1 |
HGNC: | 20197 |
UniProt: | Q96A29 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.00e-08 | 12 |
Ontology term | p-value | n |
---|---|---|
epithelium of foregut-midgut junction | 4.99e-15 | 25 |
anatomical boundary | 4.99e-15 | 25 |
hepatobiliary system | 4.99e-15 | 25 |
foregut-midgut junction | 4.99e-15 | 25 |
septum transversum | 4.99e-15 | 25 |
gut epithelium | 9.64e-15 | 54 |
hepatic diverticulum | 3.28e-12 | 22 |
liver primordium | 3.28e-12 | 22 |
tonsil | 9.61e-12 | 1 |
mucosa-associated lymphoid tissue | 9.61e-12 | 1 |
lymphoid tissue | 9.61e-12 | 1 |
tonsillar ring | 9.61e-12 | 1 |
digestive tract diverticulum | 1.13e-11 | 23 |
endoderm-derived structure | 9.53e-11 | 160 |
endoderm | 9.53e-11 | 160 |
presumptive endoderm | 9.53e-11 | 160 |
epithelial sac | 9.90e-11 | 25 |
endocrine gland | 1.31e-10 | 35 |
sac | 2.59e-10 | 26 |
digestive system | 2.81e-10 | 145 |
digestive tract | 2.81e-10 | 145 |
primitive gut | 2.81e-10 | 145 |
liver | 2.24e-09 | 19 |
digestive gland | 2.24e-09 | 19 |
liver bud | 2.24e-09 | 19 |
endo-epithelium | 2.61e-09 | 82 |
thyroid gland | 3.04e-09 | 5 |
pharyngeal pouch | 3.04e-09 | 5 |
thyroid diverticulum | 3.04e-09 | 5 |
pharyngeal pouch 2 | 3.04e-09 | 5 |
thyroid primordium | 3.04e-09 | 5 |
gland | 3.43e-08 | 59 |
endocrine system | 3.72e-08 | 45 |
subdivision of digestive tract | 1.52e-07 | 118 |
foregut | 6.86e-07 | 87 |
Ontology term | p-value | n |
---|---|---|
papillary adenocarcinoma | 1.32e-11 | 1 |