FFCP PHASE1:Hg19::chr17:63217193..63217211,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:63217193..63217211,+ | |||
|coexpression_cluster_id=C68 | |||
|description=CAGE_peak_at_chr17:63217193..63217211,+ | |description=CAGE_peak_at_chr17:63217193..63217211,+ | ||
|id=chr17:63217193..63217211,+ | |id=chr17:63217193..63217211,+ | ||
|ontology_enrichment_celltype=CL:0000349!2.47e-22!3;CL:0002577!2.47e-22!3;CL:0002537!1.55e-13!5;CL:0002541!1.41e-10!3;CL:0002563!1.01e-07!4 | |ontology_enrichment_celltype=CL:0000349!2.47e-22!3;CL:0002577!2.47e-22!3;CL:0002537!1.55e-13!5;CL:0002541!1.41e-10!3;CL:0002563!1.01e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0002577;1.80e-38;3!CL:0000349;1.65e-37;19!CL:0002537;8.09e-24;5!CL:0002541;8.99e-11;3!CL:0000322;1.14e-10;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002577,1.80e-38,3;CL:0000349,1.65e-37,19;CL:0002537,8.09e-24,5;CL:0002541,8.99e-11,3;CL:0000322,1.09e-10,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3910;2.55e-15;2!DOID:3908;6.58e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:3910,2.37e-15,2;DOID:3908,6.39e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0005631!2.44e-49!14;UBERON:0000158!2.44e-49!14;UBERON:0003124!2.05e-36!7;UBERON:0001987!6.19e-29!4;UBERON:0004340!6.19e-29!4;UBERON:0000478!4.29e-28!24;UBERON:0000305!1.39e-16!7;UBERON:0004923!1.17e-15!57;UBERON:0004871!1.56e-14!8;UBERON:0000476!1.41e-10!3;UBERON:0000920!1.41e-10!3;UBERON:0001242!1.01e-07!4;UBERON:0001262!1.01e-07!4;UBERON:0004786!1.01e-07!4;UBERON:0004808!1.01e-07!4;UBERON:0001277!1.01e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;8.12e-30;24!UBERON:0001987;3.65e-29;4!UBERON:0005631;2.78e-26;10!UBERON:0000158;2.78e-26;10!UBERON:0000305;2.46e-17;7!UBERON:0004903;2.55e-15;2!UBERON:0002173;2.55e-15;2!UBERON:0002186;2.55e-15;2!UBERON:0003124;8.99e-11;3!UBERON:0000920;8.99e-11;3!UBERON:0004821;1.14e-10;3!UBERON:0007499;1.14e-10;3!UBERON:0003215;1.14e-10;3!UBERON:0010368;1.14e-10;3!UBERON:0009911;1.14e-10;3!UBERON:0002299;1.14e-10;3!UBERON:0006524;1.14e-10;3!UBERON:0008874;1.14e-10;3!UBERON:0002169;1.14e-10;3!UBERON:0004894;1.14e-10;3!UBERON:0009856;2.52e-08;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.12e-50,14;UBERON:0000158,1.12e-50,14;UBERON:0003124,7.12e-37,7;UBERON:0000478,8.12e-30,24;UBERON:0001987,3.65e-29,4;UBERON:0004340,3.65e-29,4;UBERON:0000305,2.46e-17,7;UBERON:0004903,2.37e-15,2;UBERON:0002173,2.37e-15,2;UBERON:0002186,2.37e-15,2;UBERON:0004871,2.65e-15,8;UBERON:0004923,4.13e-11,66;UBERON:0000920,8.99e-11,3;UBERON:0004821,1.09e-10,3;UBERON:0003215,1.09e-10,3;UBERON:0010368,1.09e-10,3;UBERON:0009911,1.09e-10,3;UBERON:0002299,1.09e-10,3;UBERON:0006524,1.09e-10,3;UBERON:0008874,1.09e-10,3;UBERON:0002169,1.09e-10,3;UBERON:0004894,1.09e-10,3 | |||
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|short_description=p@chr17:63217193..63217211,+ | |short_description=p@chr17:63217193..63217211,+ | ||
}} | }} |
Latest revision as of 19:58, 25 July 2015
Short description: | p@chr17:63217193..63217211, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:63217193..63217211, + |
Coexpression cluster: | C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
placental epithelial cell | 1.80e-38 | 3 |
extraembryonic cell | 1.65e-37 | 19 |
amnion mesenchymal stem cell | 8.09e-24 | 5 |
chorionic membrane mesenchymal stem cell | 8.99e-11 | 3 |
pneumocyte | 1.09e-10 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.12e-50 | 14 |
membranous layer | 1.12e-50 | 14 |
chorion | 7.12e-37 | 7 |
extraembryonic structure | 8.12e-30 | 24 |
placenta | 3.65e-29 | 4 |
allantois | 3.65e-29 | 4 |
amnion | 2.46e-17 | 7 |
bronchoalveolar duct junction | 2.37e-15 | 2 |
alveolar duct | 2.37e-15 | 2 |
bronchiole | 2.37e-15 | 2 |
somatic layer of lateral plate mesoderm | 2.65e-15 | 8 |
organ component layer | 4.13e-11 | 66 |
egg chorion | 8.99e-11 | 3 |
pulmonary alveolus epithelium | 1.09e-10 | 3 |
alveolus | 1.09e-10 | 3 |
pulmonary lobule | 1.09e-10 | 3 |
lobule | 1.09e-10 | 3 |
alveolus of lung | 1.09e-10 | 3 |
alveolar system | 1.09e-10 | 3 |
pulmonary acinus | 1.09e-10 | 3 |
alveolar sac | 1.09e-10 | 3 |
alveolar wall | 1.09e-10 | 3 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 2.37e-15 | 2 |
non-small cell lung carcinoma | 6.39e-07 | 5 |