FFCP PHASE1:Hg19::chr2:240230890..240230920,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9759 | |EntrezGene=9759 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14063 | |HGNC=14063 | ||
|TSSclassifier=strong | |||
|UniProt=C9J0X4 | |UniProt=C9J0X4 | ||
|association_with_transcript=0bp_to_ENST00000446876_5end | |association_with_transcript=0bp_to_ENST00000446876_5end | ||
|cluster_id=chr2:240230890..240230920,- | |||
|coexpression_cluster_id=C4208 | |||
|description=CAGE_peak_3_at_HDAC4_5end | |description=CAGE_peak_3_at_HDAC4_5end | ||
|id=chr2:240230890..240230920,- | |id=chr2:240230890..240230920,- | ||
|ontology_enrichment_celltype=CL:0000057!5.55e-09!75 | |ontology_enrichment_celltype=CL:0000057!5.55e-09!75 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.22e-40!115;UBERON:0001049!1.39e-15!57;UBERON:0005068!1.39e-15!57;UBERON:0006241!1.39e-15!57;UBERON:0007135!1.39e-15!57;UBERON:0003080!3.75e-15!42;UBERON:0002619!5.39e-15!22;UBERON:0002780!9.54e-15!41;UBERON:0001890!9.54e-15!41;UBERON:0006240!9.54e-15!41;UBERON:0002616!1.41e-14!59;UBERON:0001950!3.97e-14!20;UBERON:0001893!1.41e-12!34;UBERON:0000956!3.01e-12!25;UBERON:0000203!3.01e-12!25;UBERON:0002020!4.02e-12!34;UBERON:0003528!4.02e-12!34;UBERON:0002791!6.59e-12!33;UBERON:0001869!6.83e-12!32;UBERON:0000955!1.18e-11!69;UBERON:0006238!1.18e-11!69;UBERON:0000153!4.61e-11!129;UBERON:0007811!4.61e-11!129;UBERON:0001017!7.84e-11!82;UBERON:0000468!1.17e-10!659;UBERON:0005743!1.91e-10!86;UBERON:0000033!4.45e-10!123;UBERON:0002346!4.89e-10!90;UBERON:0003075!6.79e-10!86;UBERON:0007284!6.79e-10!86;UBERON:0000073!8.82e-10!94;UBERON:0001016!8.82e-10!94;UBERON:0000062!9.51e-10!511;UBERON:0000475!1.47e-09!365;UBERON:0000467!8.08e-09!625;UBERON:0000480!1.04e-08!626;UBERON:0003056!2.03e-08!61;UBERON:0000479!6.30e-08!787;UBERON:0000924!1.25e-07!173;UBERON:0006601!1.25e-07!173;UBERON:0004121!1.98e-07!169;UBERON:0000481!2.85e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;4.31e-12;20!UBERON:0002619;1.06e-10;22!UBERON:0007023;2.39e-09;114!UBERON:0000956;4.99e-09;25!UBERON:0000203;4.99e-09;25!UBERON:0001869;1.91e-07;32!UBERON:0001893;4.20e-07;34!UBERON:0000200;7.02e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.66e-37,114;UBERON:0001950,6.00e-12,20;UBERON:0002619,1.42e-10,22;UBERON:0000956,6.41e-09,25;UBERON:0000203,6.41e-09,25;UBERON:0002780,7.24e-09,41;UBERON:0001890,7.24e-09,41;UBERON:0003080,7.24e-09,41;UBERON:0006240,7.24e-09,41;UBERON:0001869,1.76e-08,32;UBERON:0001893,9.26e-08,34;UBERON:0003102,1.72e-07,99;UBERON:0002791,2.70e-07,32;UBERON:0000073,2.97e-07,53;UBERON:0002616,2.97e-07,53;UBERON:0000161,3.24e-07,36;UBERON:0000200,7.77e-07,6 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0.563817616383885,0,0,0,0,0,0,0,0,0,0,0.247532705920093,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0.651032612147555,0,0,0,0,0.755751887377619,0,0,0,0,0,0.768482119587302,0,0.689491361473237,0.645484683583826,0,0,0,0,0.612167784741805,0.962787081228281,0,0,1.39624560335142,0,0,0,0,0,0.521482918420201,0,0.605399502633369,0.736555271975129,0,0.211255286311942,0.212604299965044,0,0.22465726229299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89151321907653,2.00535164254356,1.59331170856906,0,1.94653948121054,0,0,0,2.42311289670768,0,0,0,0.174129737299267,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0.397227542439656,2.58152958673932,1.06400514659507,0,0,0,0,0.134710672069688,0,0.454072282934794,1.72852777344,0,0,0,0.597794722207204,0,0,0,2.44985005505872,0,1.75653827998801,1.18800285728205,2.47266929278557,0,1.43723628363248,0.168336113954066,0.375355559615893,0.831192346452549,1.31693286264251,0.612975591598039,2.70428506031874,0,1.4351170855109,0.85422955527427,1.48352330811693,3.30100205692843,1.44273540933814,1.8034837803194,1.67505170698431,1.0126579934476,0.292311015483596,1.51460264546469,1.74894807420369,1.93975268182574,2.84007674013291,0.503760491138201,0,0,0,0,0,0,0,0,0,0,0,1.92972281457866,0,0.464367928031979,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,0,0,0,0,0,0,0,0,0,0,0,1.03993478527958,0,0,0,0,0,0,0,0,0.492434012174795,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0.224262168690721,0,0,0,0,0,0.797814349754612,1.04007436911366,0,0,0,0,2.71310802695722,0.823240336780769,0,1.06617584622764,0,0.602878754119172,0,0.299918973546171,0,0,0,0,0,0,0.289562613335158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0,0.415941723061614,0.178428988797162,1.26161932027148,2.57711112983969,0.601892199455438,0,0,0,0,0.260650843404249,0,0,0,0,0.106727557803444,0,0,0,0.248107807818777,0.153461973288062,0.280660094433074,0.768834895534206,0,0.160853921143607,0,0.462629081407967,0,0.410635780069046,0.519254429183621,0.232420756919918,0,0,0,0.114814448164607,0.182091168006717,1.70461739447251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515205058238611,0,0,0,0,1.6068392984416,0.290012154876366,0.154048617114644,0.15350367472613,0.137836572484531,0.537101224341368,0.870100163485371,0.255679882248303,3.20515328328254,0,0,0,0,0.464845549297286,0.62962469366128,0,0.924100740528266,0,1.73986598415015,0,0,0,0,0.190630193923825,0,0,0.318203247925937,0,0.719489830333259,0.274537029736055,0.589062011728432,0,0,0,0,1.21856744815642,0,1.50149902548784,0.989838023675989,0,1.65409603063837,0,0.438450885253763,0,0,0,0,0,0.143411352204052,0.0982490410131212,0,0.709522128141196,0.422215270595328,2.30506425071931,0,0,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.66270448179735,0,0,0,0,0,0,0.994147647766298,0.281338832821026,0,0,0,1.39473591775749,6.07824614168525,0,0,0,0,0,0,0,10.5548444031519,0,0,0.969332746095218,2.13366625772258,0,0,0,0.724999575434793,0,0,0,0,0,0.173624994933292,0,0.241192877250816,0,0.552896299656123,0,1.75508317723178,0,0,10.4652351565164,0,0,0,0,0.638002319463839,0.641183153813036,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,8.95735737970654,7.34197785377715,2.4441205797345,0,0,0,0.471807930864739,14.4463976513782,0.234264445725339,0,0,0,1.18375320854817,2.41981432097328,0.30607276163049,5.2444861091645,0,0,0,0,0,0,0,0,0,0,0,6.46488672495512,0,0,0,0,4.26751672549045,0,2.71176888936639,0,0,2.27918865441163,0,0,39.7022570215196,0,0,0,0,0,0,0,0,0,0,0,0,0.547621515567972,0,0,0,5.02708322290058,8.47893568843229,0,0.998395002494955,1.71690419254628,1.11585728720936,0.671834724867263,0.720599767084807,0,0,0,0,0,0,0.795229689809303,0.953423842781029,0,0,0,0,0.77380195455795,2.06548492637284,0,0.157611414598396,0.314727528809989,0,0,0,2.85878130549347,0,0,1.08599920350743,0,0.653174720218818,0,0,0,0,0,0,0.387848869084652,0.39669780522807,0,0,0.320362237703084,0.943225830597996,3.31391244277756,0.496166021811951,0,0,0,2.1760712134779,1.7548292581589,1.83807346058077,3.60659893780785,0,0.886068179966986,1.46431517882356,5.13282815896649,0,1.22021956690538,1.05563885000352,0,0,0,0,0,0,0,1.64180283175561,1.16856654923612,0,0,0.50313580350515,0,0.228840068396924,1.20984739010591,1.5543720058278,0.147855149989634,0.318593534327405,0,0.155262956876259,0.829412415681711,0.265841714557995,0,0.150257608997218,0.380805212168795,1.22061219961398,0.181848659202559,0.107410557042488,0,0,0,1.03018711554838,1.34699795506368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.14775308455192,0,0,0,0,0,0,0,0,0,0,0.552317850755522,0,0,0.127894371303652,0.431299245586727,0,0.109209638192014,0.848662649770126,1.2754495206101,0,0,0.318004350653419,0,0,1.76337971845342,1.8374728641192,1.73418907760441,1.41696576325585,5.58718506700029,1.43581454968528,0.504143392443436,4.28774965278151,3.22951291263702,0,0,0,0,0,0,0,0,2.93320280562103,0,0,0,0,0,2.4988906308806,0.781078098613847,4.13373593002368,2.60004821795018,0.546974809018219,1.64477330057155,20.8408694923504,0,0,0,0.336283722218824,3.64179362541979,5.23623040107984,0.620916591138472,0,0,0.40781839786099,3.09132035745391,0,0,8.00629547075243,0,0,2.73947616152849,0,0,5.64664698995585,0,0,2.08629926763095,0.801711364730253,0,0,0,2.58136415292167,0,0,5.08064460229115,0,0,0,0,0,0,71.8646009278563,43.7343557207612,6.95888658802919,1.94284397223656,0,0,0,0,0,0,4.39892701215285,0.655678681511872,0,14.4637509834804,0,0.588925401344836,0.297046400327086,0.8453114551668,0.169927114687817,0.187967835959707,1.03132620757723,0,0,0,0,0.730336388246517,1.83491713361816,0.716697915757256,0,3.67154047030939,0.436350690340377,5.81929524566941,1.11598505450025,0.924351257262837,1.29787968637137,0,0,0.126698501011437,0,0,0,0,1.74291005901951,1.60778478093707,1.65833887891756,0.517164979309476,28.5733535747314,2.3806443146374,0.904244737704086,0.434523000071005,0,0.509177266225319,1.61693751166575,20.9008077981083,8.55583252713203,1.27968900727716,1.14755528628282,6.65320713092027,0,0,0,0,0,11.2462128648237,2.03448089157869,2.66302709674205,4.42802345900258,0 | |phase1_expression=0.181678379270557,0.428201047781966,0.563817616383885,0,0,0,0,0,0,0,0,0,0,0.247532705920093,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0.651032612147555,0,0,0,0,0.755751887377619,0,0,0,0,0,0.768482119587302,0,0.689491361473237,0.645484683583826,0,0,0,0,0.612167784741805,0.962787081228281,0,0,1.39624560335142,0,0,0,0,0,0.521482918420201,0,0.605399502633369,0.736555271975129,0,0.211255286311942,0.212604299965044,0,0.22465726229299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89151321907653,2.00535164254356,1.59331170856906,0,1.94653948121054,0,0,0,2.42311289670768,0,0,0,0.174129737299267,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0.397227542439656,2.58152958673932,1.06400514659507,0,0,0,0,0.134710672069688,0,0.454072282934794,1.72852777344,0,0,0,0.597794722207204,0,0,0,2.44985005505872,0,1.75653827998801,1.18800285728205,2.47266929278557,0,1.43723628363248,0.168336113954066,0.375355559615893,0.831192346452549,1.31693286264251,0.612975591598039,2.70428506031874,0,1.4351170855109,0.85422955527427,1.48352330811693,3.30100205692843,1.44273540933814,1.8034837803194,1.67505170698431,1.0126579934476,0.292311015483596,1.51460264546469,1.74894807420369,1.93975268182574,2.84007674013291,0.503760491138201,0,0,0,0,0,0,0,0,0,0,0,1.92972281457866,0,0.464367928031979,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,0,0,0,0,0,0,0,0,0,0,0,1.03993478527958,0,0,0,0,0,0,0,0,0.492434012174795,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0.224262168690721,0,0,0,0,0,0.797814349754612,1.04007436911366,0,0,0,0,2.71310802695722,0.823240336780769,0,1.06617584622764,0,0.602878754119172,0,0.299918973546171,0,0,0,0,0,0,0.289562613335158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0,0.415941723061614,0.178428988797162,1.26161932027148,2.57711112983969,0.601892199455438,0,0,0,0,0.260650843404249,0,0,0,0,0.106727557803444,0,0,0,0.248107807818777,0.153461973288062,0.280660094433074,0.768834895534206,0,0.160853921143607,0,0.462629081407967,0,0.410635780069046,0.519254429183621,0.232420756919918,0,0,0,0.114814448164607,0.182091168006717,1.70461739447251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515205058238611,0,0,0,0,1.6068392984416,0.290012154876366,0.154048617114644,0.15350367472613,0.137836572484531,0.537101224341368,0.870100163485371,0.255679882248303,3.20515328328254,0,0,0,0,0.464845549297286,0.62962469366128,0,0.924100740528266,0,1.73986598415015,0,0,0,0,0.190630193923825,0,0,0.318203247925937,0,0.719489830333259,0.274537029736055,0.589062011728432,0,0,0,0,1.21856744815642,0,1.50149902548784,0.989838023675989,0,1.65409603063837,0,0.438450885253763,0,0,0,0,0,0.143411352204052,0.0982490410131212,0,0.709522128141196,0.422215270595328,2.30506425071931,0,0,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.66270448179735,0,0,0,0,0,0,0.994147647766298,0.281338832821026,0,0,0,1.39473591775749,6.07824614168525,0,0,0,0,0,0,0,10.5548444031519,0,0,0.969332746095218,2.13366625772258,0,0,0,0.724999575434793,0,0,0,0,0,0.173624994933292,0,0.241192877250816,0,0.552896299656123,0,1.75508317723178,0,0,10.4652351565164,0,0,0,0,0.638002319463839,0.641183153813036,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,8.95735737970654,7.34197785377715,2.4441205797345,0,0,0,0.471807930864739,14.4463976513782,0.234264445725339,0,0,0,1.18375320854817,2.41981432097328,0.30607276163049,5.2444861091645,0,0,0,0,0,0,0,0,0,0,0,6.46488672495512,0,0,0,0,4.26751672549045,0,2.71176888936639,0,0,2.27918865441163,0,0,39.7022570215196,0,0,0,0,0,0,0,0,0,0,0,0,0.547621515567972,0,0,0,5.02708322290058,8.47893568843229,0,0.998395002494955,1.71690419254628,1.11585728720936,0.671834724867263,0.720599767084807,0,0,0,0,0,0,0.795229689809303,0.953423842781029,0,0,0,0,0.77380195455795,2.06548492637284,0,0.157611414598396,0.314727528809989,0,0,0,2.85878130549347,0,0,1.08599920350743,0,0.653174720218818,0,0,0,0,0,0,0.387848869084652,0.39669780522807,0,0,0.320362237703084,0.943225830597996,3.31391244277756,0.496166021811951,0,0,0,2.1760712134779,1.7548292581589,1.83807346058077,3.60659893780785,0,0.886068179966986,1.46431517882356,5.13282815896649,0,1.22021956690538,1.05563885000352,0,0,0,0,0,0,0,1.64180283175561,1.16856654923612,0,0,0.50313580350515,0,0.228840068396924,1.20984739010591,1.5543720058278,0.147855149989634,0.318593534327405,0,0.155262956876259,0.829412415681711,0.265841714557995,0,0.150257608997218,0.380805212168795,1.22061219961398,0.181848659202559,0.107410557042488,0,0,0,1.03018711554838,1.34699795506368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.14775308455192,0,0,0,0,0,0,0,0,0,0,0.552317850755522,0,0,0.127894371303652,0.431299245586727,0,0.109209638192014,0.848662649770126,1.2754495206101,0,0,0.318004350653419,0,0,1.76337971845342,1.8374728641192,1.73418907760441,1.41696576325585,5.58718506700029,1.43581454968528,0.504143392443436,4.28774965278151,3.22951291263702,0,0,0,0,0,0,0,0,2.93320280562103,0,0,0,0,0,2.4988906308806,0.781078098613847,4.13373593002368,2.60004821795018,0.546974809018219,1.64477330057155,20.8408694923504,0,0,0,0.336283722218824,3.64179362541979,5.23623040107984,0.620916591138472,0,0,0.40781839786099,3.09132035745391,0,0,8.00629547075243,0,0,2.73947616152849,0,0,5.64664698995585,0,0,2.08629926763095,0.801711364730253,0,0,0,2.58136415292167,0,0,5.08064460229115,0,0,0,0,0,0,71.8646009278563,43.7343557207612,6.95888658802919,1.94284397223656,0,0,0,0,0,0,4.39892701215285,0.655678681511872,0,14.4637509834804,0,0.588925401344836,0.297046400327086,0.8453114551668,0.169927114687817,0.187967835959707,1.03132620757723,0,0,0,0,0.730336388246517,1.83491713361816,0.716697915757256,0,3.67154047030939,0.436350690340377,5.81929524566941,1.11598505450025,0.924351257262837,1.29787968637137,0,0,0.126698501011437,0,0,0,0,1.74291005901951,1.60778478093707,1.65833887891756,0.517164979309476,28.5733535747314,2.3806443146374,0.904244737704086,0.434523000071005,0,0.509177266225319,1.61693751166575,20.9008077981083,8.55583252713203,1.27968900727716,1.14755528628282,6.65320713092027,0,0,0,0,0,11.2462128648237,2.03448089157869,2.66302709674205,4.42802345900258,0 | ||
|short_description=p3@HDAC4 | |short_description=p3@HDAC4 | ||
}} | }} |
Latest revision as of 06:50, 16 September 2015
Short description: | p3@HDAC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HDAC4_5end |
Coexpression cluster: | C4208_skeletal_gall_throat_penis_tongue_diaphragm_smooth |
Association with transcript: | 0bp_to_ENST00000446876_5end |
EntrezGene: | HDAC4 |
HGNC: | 14063 |
UniProt: | C9J0X4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 3.66e-37 | 114 |
neocortex | 6.00e-12 | 20 |
regional part of cerebral cortex | 1.42e-10 | 22 |
cerebral cortex | 6.41e-09 | 25 |
pallium | 6.41e-09 | 25 |
regional part of forebrain | 7.24e-09 | 41 |
forebrain | 7.24e-09 | 41 |
anterior neural tube | 7.24e-09 | 41 |
future forebrain | 7.24e-09 | 41 |
cerebral hemisphere | 1.76e-08 | 32 |
telencephalon | 9.26e-08 | 34 |
surface structure | 1.72e-07 | 99 |
regional part of telencephalon | 2.70e-07 | 32 |
regional part of nervous system | 2.97e-07 | 53 |
regional part of brain | 2.97e-07 | 53 |
orifice | 3.24e-07 | 36 |
gyrus | 7.77e-07 | 6 |