FFCP PHASE1:Hg19::chr12:115122005..115122016,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:115122005..115122016,-
|short_description=p3@TBX3
|description=CAGE_peak_3_at_TBX3_5end
|association_with_transcript=-36bp_to_ENST00000349155,ENST00000361...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6926 | |EntrezGene=6926 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11602 | |HGNC=11602 | ||
|TSSclassifier=strong | |||
|UniProt=C9JIZ8,O15119 | |UniProt=C9JIZ8,O15119 | ||
|association_with_transcript=-36bp_to_ENST00000349155,ENST00000361100,NM_005996,NM_016569,uc001tvt.1,uc001tvu.1,uc010syw.1_5end | |||
|cluster_id=chr12:115122005..115122016,- | |||
|description=CAGE_peak_3_at_TBX3_5end | |||
|id=chr12:115122005..115122016,- | |||
|ontology_enrichment_celltype=CL:0000057!3.15e-12!75;CL:0000055!3.15e-11!180;CL:0002620!8.53e-07!23 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003104!5.59e-17!238;UBERON:0009142!5.59e-17!238;UBERON:0000481!1.65e-16!347;UBERON:0005256!4.78e-15!143;UBERON:0002100!1.25e-11!216;UBERON:0000475!1.43e-11!365;UBERON:0000468!2.12e-11!659;UBERON:0004119!3.09e-11!169;UBERON:0000925!3.09e-11!169;UBERON:0006595!3.09e-11!169;UBERON:0001007!3.60e-11!155;UBERON:0001555!3.60e-11!155;UBERON:0007026!3.60e-11!155;UBERON:0000914!7.50e-11!83;UBERON:0002329!7.50e-11!83;UBERON:0003077!7.50e-11!83;UBERON:0003059!7.50e-11!83;UBERON:0007282!7.50e-11!83;UBERON:0009618!7.50e-11!83;UBERON:0007285!7.50e-11!83;UBERON:0003102!1.12e-10!95;UBERON:0004290!5.15e-09!70;UBERON:0000077!9.64e-09!130;UBERON:0000467!1.04e-08!625;UBERON:0000480!1.53e-08!626;UBERON:0000486!2.21e-08!82;UBERON:0004921!3.60e-08!129;UBERON:0004185!3.60e-08!129;UBERON:0002385!1.03e-07!63;UBERON:0001015!1.03e-07!63;UBERON:0000383!1.03e-07!63;UBERON:0000922!4.01e-07!612;UBERON:0001134!4.87e-07!61;UBERON:0002036!4.87e-07!61;UBERON:0003082!4.87e-07!61;UBERON:0002050!7.06e-07!605;UBERON:0005423!7.06e-07!605;UBERON:0001046!7.27e-07!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0001134;8.48e-07;16!UBERON:0002036;8.48e-07;16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,4.71e-14,160;UBERON:0009142,4.71e-14,160;UBERON:0005256,4.57e-13,122;UBERON:0003102,2.62e-10,99;UBERON:0004119,2.89e-09,160;UBERON:0000925,2.89e-09,160;UBERON:0006595,2.89e-09,160;UBERON:0002100,5.86e-09,199;UBERON:0007524,2.91e-08,73;UBERON:0007503,3.12e-08,78;UBERON:0002329,3.50e-08,71;UBERON:0003059,3.50e-08,71;UBERON:0007282,3.50e-08,71;UBERON:0004290,3.50e-08,71;UBERON:0009618,3.50e-08,71;UBERON:0000486,4.16e-08,83;UBERON:0003077,6.28e-08,72;UBERON:0007285,6.28e-08,72;UBERON:0001007,7.44e-08,145;UBERON:0001555,7.44e-08,145;UBERON:0007026,7.44e-08,145;UBERON:0002385,8.54e-07,64;UBERON:0001015,8.54e-07,64;UBERON:0000383,8.54e-07,64 | |||
|phase1_expression=1.2717486548939,0.214100523890983,0,0,0,0.872338524100369,2.53299878168311,1.89515962028049,0.261185628199839,6.14334841253772,1.39560233594486,0.218441372130172,0,4.95065411840187,2.31978163009541,2.6893005858071,0,0,0,1.23121058076788,0.816002764977012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512321413058201,0,0,0.645484683583826,0,0,0.272906150057846,0,0,0.320929027076094,0,0,0.398927315243264,0,0,0,0,0,0,0,1.81619850790011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0,0,0,0.144846518960824,0.795285947051099,0.973269740605272,0,0,0.087834785693126,1.57174890597255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516833518338658,0,0.33472061276467,0.402829317109147,0,0,0,0,0,0,0,0,0.949265659568129,0,0,0,0,0,0.633152558322899,0.926864265692532,0.860509862246441,0,0.560677600142307,1.06748995729705,0.74000264525148,0.622422070799533,0.942974704487816,1.79808093424805,0.605429710579726,0.576175924479999,1.17160715916898,1.87296046098192,3.4228309292667,2.54062756938062,1.29177948508141,1.78060238804945,0.98315564691574,5.10385428137233,2.57952066354713,4.13303124703062,5.94001428641027,0.989067717114227,3.64064544775211,0.718618141816238,3.36672227908132,4.25402967564678,7.20366700258876,1.31693286264251,1.22595118319608,2.25357088359895,0.226864366320042,1.07633781413317,0.640672166455702,0.847727604638247,2.10063767259082,1.13357782162283,1.03056216018252,0.558350568994769,3.71307930930786,0.584622030967192,4.54380793639406,1.19664868234989,0.161646056818812,2.4850671476163,1.61203357164224,3.73033303083073,0,0,0,0,0,0.580969714347592,0.10366105501537,0.504641701751257,0,1.56449532329816,2.57296375277154,0,0,0.721879481669586,0.354920400119532,0.674338760312407,0.241011029883482,0.882351781859152,1.74303555273925,0.237270619111097,0.808987848960987,1.96221465125346,1.15424147083917,0,0,0.4115740113314,1.47008711385542,5.07020139287323,2.94848165003288,2.36315962672562,0,0.860919069801795,0.171567810298526,0.219500570817251,0,0.301586917234893,0.277765335475589,0.325808305310325,0,0,0.231860809950154,0,0.144366447761074,0,0.190254152234598,0,0,0,0,0,0,0.16798212819886,0,0.716468181622786,0.581267877027924,0.766765358330422,0,0,0,0.432359860250884,0.25248486685276,0.126995788584338,0,0,0,0.616964956219941,0,0,0.112131084345361,0,0.51336800074665,1.93907573636667,0,0,5.31876233169741,2.08014873822732,0.771622122786426,1.41849132023278,2.1313774321288,1.57275793023962,4.34097284313154,3.29296134712308,1.62868092146868,0.710783897485092,3.95975936466715,0,0,0.399891964728228,0,0,0,0,0,5.70547620162874,1.15825045334063,5.13690806375959,1.07436577943937,0,0,0,0,0,0,0,0,0,0,0,0,5.15304265220388,1.00034104211935,0.542530047399471,3.74347550755453,2.3195768543631,3.94256037584837,5.97421216462837,0,2.27407504055985,1.03473071292505,1.32845119707087,1.10621501125022,5.99496939829772,0.783204629850962,0,0,0,0,0.303127571446259,0,0,0.248107807818777,0.61384789315225,0.561320188866147,0.128139149255701,0,0.160853921143607,0,3.08419387605311,1.42049380250502,2.13530605635904,1.03850885836724,1.74315567689939,0.241718899183244,4.61164881697555,1.84161977871793,1.83703117063371,1.45672934405374,1.83574180943194,0,0.693138033939733,0,0,0.211103257785751,1.13733384070897,0.340187410553031,0,0,2.98041081298238,0.501689773854853,0,0,0,0,0,0,0,0,8.75848599005639,0.0915694648183434,0.165018999841176,0,1.30012049207304,0,2.03008508413456,1.07834031980251,0.307007349452259,2.75673144969061,1.71872391789238,1.88521702088497,0.852266274161009,0.178064071293475,0,0,0,0,0,1.25924938732256,3.485186350803,0.616067160352178,0.532306030317022,1.73986598415015,0.55597265731176,0.858749320451947,0,0,0.190630193923825,3.32667128704734,2.56763392820352,0.318203247925937,0,0.719489830333259,0,0.471249609382746,0.808729926293264,1.58510321173008,0.421258456238981,0.48763373908959,0.487426979262569,10.5650146756755,1.9109987597118,0.848432591722276,2.26016233240486,2.75682671773062,1.32687795048244,1.75380354101505,1.15755106853338,1.31178950409327,0.405820753925408,0.30982349809975,1.40847801266121,3.15504974848913,0.196498082026242,0,2.83808851256478,0,0,1.51789269506286,1.39973888097993,0.0962221127255121,0,0,9.0378048745708,4.73555909938353,3.36942951335251,2.21715076768338,3.67557440331135,0,0,0,0,0,0,0,0,0,0.962479855263359,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333698283423817,0,0,0,0,0,0,1.49712432326576,1.17206543417515,0.242721043499027,0.111443384277478,0.568272293612826,0,0.296964680832639,0.307160702099232,0.994147647766298,0.140669416410513,0.667852230137435,0,0,1.19548792950642,0.276283915531148,0,1.73856760253663,0,0,0.179736702294654,0,0,3.94573622547734,0,0,0.969332746095218,0.278304294485554,1.99613798001194,0,3.93569999982881,11.5999932069567,0.1137934482855,0,0.472775363535873,0.689486746482929,0,0,0.885741385813839,0.241192877250816,0,0.110579259931225,0,0.438770794307945,0,0.557694977114413,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| ||
|short_description=p3@TBX3 | |||
}} | }} |
Latest revision as of 14:37, 16 September 2015
Short description: | p3@TBX3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TBX3_5end |
Coexpression cluster: | NA |
Association with transcript: | -36bp_to_ENST00000349155, ENST00000361100, NM_005996, NM_016569, uc001tvt.1, uc001tvu.1, uc010syw.1_5end |
EntrezGene: | TBX3 |
HGNC: | 11602 |
UniProt: | C9JIZ8O15119 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesenchyme | 4.71e-14 | 160 |
entire embryonic mesenchyme | 4.71e-14 | 160 |
trunk mesenchyme | 4.57e-13 | 122 |
surface structure | 2.62e-10 | 99 |
endoderm-derived structure | 2.89e-09 | 160 |
endoderm | 2.89e-09 | 160 |
presumptive endoderm | 2.89e-09 | 160 |
trunk | 5.86e-09 | 199 |
dense mesenchyme tissue | 2.91e-08 | 73 |
epithelial vesicle | 3.12e-08 | 78 |
somite | 3.50e-08 | 71 |
presomitic mesoderm | 3.50e-08 | 71 |
presumptive segmental plate | 3.50e-08 | 71 |
dermomyotome | 3.50e-08 | 71 |
trunk paraxial mesoderm | 3.50e-08 | 71 |
multilaminar epithelium | 4.16e-08 | 83 |
paraxial mesoderm | 6.28e-08 | 72 |
presumptive paraxial mesoderm | 6.28e-08 | 72 |
digestive system | 7.44e-08 | 145 |
digestive tract | 7.44e-08 | 145 |
primitive gut | 7.44e-08 | 145 |
muscle tissue | 8.54e-07 | 64 |
musculature | 8.54e-07 | 64 |
musculature of body | 8.54e-07 | 64 |