FFCP PHASE1:Hg19::chr3:5229271..5229278,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9695 | |EntrezGene=9695 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18967 | |HGNC=18967 | ||
|TSSclassifier=strong | |||
|UniProt=B4DPV5,F8WER9 | |UniProt=B4DPV5,F8WER9 | ||
|association_with_transcript=-52bp_to_ENST00000419550,ENST00000434243,uc011asz.1_5end | |association_with_transcript=-52bp_to_ENST00000419550,ENST00000434243,uc011asz.1_5end | ||
|cluster_id=chr3:5229271..5229278,+ | |||
|description=CAGE_peak_14_at_EDEM1_5end | |description=CAGE_peak_14_at_EDEM1_5end | ||
|id=chr3:5229271..5229278,+ | |id=chr3:5229271..5229278,+ | ||
|ontology_enrichment_celltype=CL:0000791!6.54e-08!18;CL:0000789!6.54e-08!18;CL:0002420!6.54e-08!18;CL:0002419!6.54e-08!18;CL:0000790!6.54e-08!18;CL:0000838!2.91e-07!52;CL:0000084!4.10e-07!25;CL:0000827!4.10e-07!25;CL:0000542!5.18e-07!53;CL:0000051!5.18e-07!53 | |ontology_enrichment_celltype=CL:0000791!6.54e-08!18;CL:0000789!6.54e-08!18;CL:0002420!6.54e-08!18;CL:0002419!6.54e-08!18;CL:0000790!6.54e-08!18;CL:0000838!2.91e-07!52;CL:0000084!4.10e-07!25;CL:0000827!4.10e-07!25;CL:0000542!5.18e-07!53;CL:0000051!5.18e-07!53 | ||
|ontology_enrichment_celltype_v019=CL:0002166;1.83e-14;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002166,1.60e-14,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001869!8.63e-08!32;UBERON:0002780!8.89e-08!41;UBERON:0001890!8.89e-08!41;UBERON:0006240!8.89e-08!41;UBERON:0003080!1.80e-07!42;UBERON:0001049!1.90e-07!57;UBERON:0005068!1.90e-07!57;UBERON:0006241!1.90e-07!57;UBERON:0007135!1.90e-07!57;UBERON:0002619!2.04e-07!22;UBERON:0007023!2.78e-07!115;UBERON:0001950!3.12e-07!20;UBERON:0000956!3.74e-07!25;UBERON:0000203!3.74e-07!25;UBERON:0001893!4.41e-07!34;UBERON:0002616!5.52e-07!59;UBERON:0002020!6.84e-07!34;UBERON:0003528!6.84e-07!34;UBERON:0000955!8.36e-07!69;UBERON:0006238!8.36e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.05e-79;2!UBERON:0005058;1.05e-79;2!UBERON:0009113;1.05e-79;2!UBERON:0004177;1.05e-32;5!UBERON:0005057;1.05e-32;5!UBERON:0001708;3.42e-11;4!UBERON:0008895;3.42e-11;4!UBERON:0002368;1.63e-09;33!UBERON:0011159;3.22e-09;5!UBERON:0000949;1.87e-07;43!UBERON:0000077;6.43e-07;27!UBERON:0002405;6.43e-07;27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.48e-40,4;UBERON:0005058,1.48e-40,4;UBERON:0009113,1.48e-40,4;UBERON:0003295,1.48e-40,4;UBERON:0005562,1.48e-40,4;UBERON:0003351,1.82e-27,6;UBERON:0004177,1.02e-23,7;UBERON:0005057,1.02e-23,7;UBERON:0008814,1.20e-20,18;UBERON:0000974,5.90e-17,10;UBERON:0003408,5.90e-17,10;UBERON:0001042,5.90e-17,10;UBERON:0009145,5.90e-17,10;UBERON:0006562,1.62e-15,11;UBERON:0009722,1.62e-15,11;UBERON:0007690,1.62e-15,11;UBERON:0001708,3.10e-11,4;UBERON:0008895,3.10e-11,4;UBERON:0002368,4.95e-11,35;UBERON:0001557,1.99e-09,19;UBERON:0011159,2.97e-09,5;UBERON:0000949,9.36e-09,45;UBERON:0010188,6.34e-08,6;UBERON:0002539,6.34e-08,6;UBERON:0008816,6.34e-08,6;UBERON:0003929,2.03e-07,54;UBERON:0002530,7.53e-07,59 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0.154934401160603,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0.863077176966451,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0.251248665256743,0,0.217188844705117,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0.205601498999509,0,0.977766799900771,0,0,0.222820913770347,0.294605907474837,0,0,0.384273959177026,0.130059347559878,0.164437904603676,0,0,0,0.535081656179426,1.04535523804977,0.113309342697566,0.383220493601921,0.68725489096526,0,0,0.651083453856419,0,0.602300476311091,0.383959833463255,0,0.473554504088034,0.821127996921047,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0.252320850875628,0,0,0,0,0,0,0.118306800039844,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,1.87467667973554,0,0,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0.431255149719035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0.0920809889358963,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,0.501689773854853,0,0,0,0,0,0,0,0,0.103041011647722,0,0.082509499920588,0,0,0,0.193341436584244,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.78494864019923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0.507447609232169,0,0,0,0,0.648473311192717,0,0,0,0,0,0,0,0.426851060090485,0,0.199579371432817,0,0,0,0,0.228234679033192,0,0,0.169291777801603,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0,0.121360521749513,0.222886768554957,0,0,0,0.307160702099232,0,0.140669416410513,0,0,0,0,0.276283915531148,0,0,0.123084805461069,0,0,0,0,0.0986434056369336,0,0,0.969332746095218,0.0927680981618513,0,0,0,0,0,0.254253650292766,0.236387681767936,0.344743373241465,0.874813840149763,0,0,0.120596438625408,0,0.331737779793674,0.295547618953547,0,0,0,0,0.113942055847001,0.23056390438806,0,0.108647371922008,0,0,0,0,0.156980256395025,0,0.225595660617181,0,0.167821586975843,0,0,0,0,0,0.216388639742091,0,0,0,0.296521128680622,0,0,0,0,0,0.182454789215666,0,0,0,0,0.30607276163049,0,0,0,0,0.330991955875499,0,0,0.284609546029793,0,0,0,0,0,0,0,0.0730893170861856,0,0,0,0,0.137041924646751,0,0.189932387867636,0.586654148204409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134366944973453,0,1.16495949527454,0,0,0,0,0,0,0.136203406111576,0,0.275078873194468,0,0.2249738915515,0,0.182248669974074,0,0,0.0524545881349981,0.105600336519406,0,0.191915197319445,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0.129282956361551,0,0.171086837884329,0,0,0.314408610199332,0,0,0,0.121792598380896,0,0,0,0,0,0.157054096250234,0,0.122026264901963,0.1251909307065,0,0,0.0620964029413835,0.138348634936231,0,0,0,0,0.468334905806882,0,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0.449803112163605,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0,0,0,0,0,0,0.138258436151731,0,0,0,0.327609848846413,0,0,0,0,0,0,0,0.139879507719444,0,0,0.107824811396682,0.157265941855896,0.109209638192014,0.169732529954025,0,0.123935764259002,0,0,0,0,0,0,0.385375350578757,0,0,0.41023272848151,0,0.138314504928436,0.161475645631851,0,0,0,0,0,0,0,0.198916222116275,0.225630985047772,0,0,0,0,0,0.405225507710368,0,0.206686796501184,0.317079050969534,0,0,0,0,0,0,0.336283722218824,0,0.455324382702595,0.0887023701626388,0.230467975111559,0,0.0679697329768317,0.197318320688547,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0.118332000730565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118920090777569,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0.128915775947154,0.0999411559249289,0,0,0,0,0,0,0.157771562193185,0.135982980381829,0.436350690340377,0,0,0,0,0.126166424835079,0.109265571963696,0,0,0,0.0918948995348449,0,0.151557396436479,0.535928260312357,0,0.103432995861895,0.213233981900981,0,2.45437857376823,2.23468971465088,0.112131862580613,0.0636471582781649,0,0,0,0,0.0717222053926763,0,0.0814032686109745,0,0,0,0,0,0,0,0.201273793591026,0.320568492303233 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0.154934401160603,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0.863077176966451,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0.251248665256743,0,0.217188844705117,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0.205601498999509,0,0.977766799900771,0,0,0.222820913770347,0.294605907474837,0,0,0.384273959177026,0.130059347559878,0.164437904603676,0,0,0,0.535081656179426,1.04535523804977,0.113309342697566,0.383220493601921,0.68725489096526,0,0,0.651083453856419,0,0.602300476311091,0.383959833463255,0,0.473554504088034,0.821127996921047,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0.252320850875628,0,0,0,0,0,0,0.118306800039844,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,1.87467667973554,0,0,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0.431255149719035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0.0920809889358963,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,0.501689773854853,0,0,0,0,0,0,0,0,0.103041011647722,0,0.082509499920588,0,0,0,0.193341436584244,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.78494864019923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0.507447609232169,0,0,0,0,0.648473311192717,0,0,0,0,0,0,0,0.426851060090485,0,0.199579371432817,0,0,0,0,0.228234679033192,0,0,0.169291777801603,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0,0.121360521749513,0.222886768554957,0,0,0,0.307160702099232,0,0.140669416410513,0,0,0,0,0.276283915531148,0,0,0.123084805461069,0,0,0,0,0.0986434056369336,0,0,0.969332746095218,0.0927680981618513,0,0,0,0,0,0.254253650292766,0.236387681767936,0.344743373241465,0.874813840149763,0,0,0.120596438625408,0,0.331737779793674,0.295547618953547,0,0,0,0,0.113942055847001,0.23056390438806,0,0.108647371922008,0,0,0,0,0.156980256395025,0,0.225595660617181,0,0.167821586975843,0,0,0,0,0,0.216388639742091,0,0,0,0.296521128680622,0,0,0,0,0,0.182454789215666,0,0,0,0,0.30607276163049,0,0,0,0,0.330991955875499,0,0,0.284609546029793,0,0,0,0,0,0,0,0.0730893170861856,0,0,0,0,0.137041924646751,0,0.189932387867636,0.586654148204409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134366944973453,0,1.16495949527454,0,0,0,0,0,0,0.136203406111576,0,0.275078873194468,0,0.2249738915515,0,0.182248669974074,0,0,0.0524545881349981,0.105600336519406,0,0.191915197319445,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0.129282956361551,0,0.171086837884329,0,0,0.314408610199332,0,0,0,0.121792598380896,0,0,0,0,0,0.157054096250234,0,0.122026264901963,0.1251909307065,0,0,0.0620964029413835,0.138348634936231,0,0,0,0,0.468334905806882,0,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0.449803112163605,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0,0,0,0,0,0,0.138258436151731,0,0,0,0.327609848846413,0,0,0,0,0,0,0,0.139879507719444,0,0,0.107824811396682,0.157265941855896,0.109209638192014,0.169732529954025,0,0.123935764259002,0,0,0,0,0,0,0.385375350578757,0,0,0.41023272848151,0,0.138314504928436,0.161475645631851,0,0,0,0,0,0,0,0.198916222116275,0.225630985047772,0,0,0,0,0,0.405225507710368,0,0.206686796501184,0.317079050969534,0,0,0,0,0,0,0.336283722218824,0,0.455324382702595,0.0887023701626388,0.230467975111559,0,0.0679697329768317,0.197318320688547,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0.118332000730565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118920090777569,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0.128915775947154,0.0999411559249289,0,0,0,0,0,0,0.157771562193185,0.135982980381829,0.436350690340377,0,0,0,0,0.126166424835079,0.109265571963696,0,0,0,0.0918948995348449,0,0.151557396436479,0.535928260312357,0,0.103432995861895,0.213233981900981,0,2.45437857376823,2.23468971465088,0.112131862580613,0.0636471582781649,0,0,0,0,0.0717222053926763,0,0.0814032686109745,0,0,0,0,0,0,0,0.201273793591026,0.320568492303233 | ||
|short_description=p14@EDEM1 | |short_description=p14@EDEM1 | ||
}} | }} |
Latest revision as of 23:07, 18 September 2015
Short description: | p14@EDEM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_14_at_EDEM1_5end |
Coexpression cluster: | NA |
Association with transcript: | -52bp_to_ENST00000419550, ENST00000434243, uc011asz.1_5end |
EntrezGene: | EDEM1 |
HGNC: | 18967 |
UniProt: | B4DPV5F8WER9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of Malassez | 1.60e-14 | 3 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.48e-40 | 4 |
hemolymphoid system gland | 1.48e-40 | 4 |
thymic region | 1.48e-40 | 4 |
pharyngeal gland | 1.48e-40 | 4 |
thymus primordium | 1.48e-40 | 4 |
pharyngeal epithelium | 1.82e-27 | 6 |
hemopoietic organ | 1.02e-23 | 7 |
immune organ | 1.02e-23 | 7 |
pharyngeal arch system | 1.20e-20 | 18 |
neck | 5.90e-17 | 10 |
gland of gut | 5.90e-17 | 10 |
chordate pharynx | 5.90e-17 | 10 |
pharyngeal region of foregut | 5.90e-17 | 10 |
pharynx | 1.62e-15 | 11 |
entire pharyngeal arch endoderm | 1.62e-15 | 11 |
early pharyngeal endoderm | 1.62e-15 | 11 |
jaw skeleton | 3.10e-11 | 4 |
splanchnocranium | 3.10e-11 | 4 |
endocrine gland | 4.95e-11 | 35 |
upper respiratory tract | 1.99e-09 | 19 |
primary subdivision of cranial skeletal system | 2.97e-09 | 5 |
endocrine system | 9.36e-09 | 45 |
protuberance | 6.34e-08 | 6 |
pharyngeal arch | 6.34e-08 | 6 |
embryonic head | 6.34e-08 | 6 |
gut epithelium | 2.03e-07 | 54 |
gland | 7.53e-07 | 59 |