FFCP PHASE1:Hg19::chr12:50677255..50677324,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:50677255..50677324,-
|short_description=p2@LIMA1
|description=CAGE_peak_2_at_LIMA1_5end
|association_with_transcript=0bp_to_ENST00000394943,ENST0000055169...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51474 | |EntrezGene=51474 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24636 | |HGNC=24636 | ||
|TSSclassifier=strong | |||
|UniProt=F8VTU2 | |UniProt=F8VTU2 | ||
|association_with_transcript=0bp_to_ENST00000394943,ENST00000551691_5end | |||
|cluster_id=chr12:50677255..50677324,- | |||
|description=CAGE_peak_2_at_LIMA1_5end | |||
|id=chr12:50677255..50677324,- | |||
|ontology_enrichment_celltype=CL:0000066!1.90e-13!254 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.09e-13,253 | |||
|ontology_enrichment_development_v019=UBERON:0006595;7.06e-08;86 | |||
|ontology_enrichment_disease=DOID:305!1.80e-16!106;DOID:0050687!1.54e-11!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.72e-16,106;DOID:0050687,1.65e-11,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.98e-17!169;UBERON:0000925!4.98e-17!169;UBERON:0006595!4.98e-17!169;UBERON:0001007!1.19e-15!155;UBERON:0001555!1.19e-15!155;UBERON:0007026!1.19e-15!155;UBERON:0004921!2.54e-12!129;UBERON:0004185!2.54e-12!129;UBERON:0000077!3.14e-11!130;UBERON:0000062!4.06e-10!511;UBERON:0007023!4.23e-10!115;UBERON:0000481!1.11e-09!347;UBERON:0000475!1.04e-08!365;UBERON:0005156!2.36e-08!59;UBERON:0000990!2.36e-08!59;UBERON:0005911!5.49e-08!82;UBERON:0000064!1.75e-07!219 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;4.70e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.06e-16,160;UBERON:0000925,1.06e-16,160;UBERON:0006595,1.06e-16,160;UBERON:0001007,3.62e-15,145;UBERON:0001555,3.62e-15,145;UBERON:0007026,3.62e-15,145;UBERON:0011216,6.93e-14,223;UBERON:0004921,7.65e-12,118;UBERON:0007023,4.59e-10,114;UBERON:0005156,2.31e-08,59;UBERON:0000990,2.31e-08,59;UBERON:0005911,5.38e-08,82 | |||
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| ||
|short_description=p2@LIMA1 | |||
}} | }} |
Latest revision as of 18:36, 18 September 2015
Short description: | p2@LIMA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LIMA1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000394943, ENST00000551691_5end |
EntrezGene: | LIMA1 |
HGNC: | 24636 |
UniProt: | F8VTU2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.09e-13 | 253 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.06e-16 | 160 |
endoderm | 1.06e-16 | 160 |
presumptive endoderm | 1.06e-16 | 160 |
digestive system | 3.62e-15 | 145 |
digestive tract | 3.62e-15 | 145 |
primitive gut | 3.62e-15 | 145 |
organ system subdivision | 6.93e-14 | 223 |
subdivision of digestive tract | 7.65e-12 | 118 |
adult organism | 4.59e-10 | 114 |
reproductive structure | 2.31e-08 | 59 |
reproductive system | 2.31e-08 | 59 |
endo-epithelium | 5.38e-08 | 82 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.72e-16 | 106 |
cell type cancer | 1.65e-11 | 143 |