FFCP PHASE1:Hg19::chr1:204885187..204885205,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:204885187..204885205,+ | |||
|coexpression_cluster_id=C1302 | |||
|description=CAGE_peak_at_chr1:204885187..204885205,+ | |description=CAGE_peak_at_chr1:204885187..204885205,+ | ||
|id=chr1:204885187..204885205,+ | |id=chr1:204885187..204885205,+ | ||
|ontology_enrichment_celltype=CL:0002076!4.95e-35!43;CL:0000223!1.32e-25!59;CL:0002251!1.40e-17!21;CL:0002368!2.09e-17!13;CL:0000066!3.59e-15!254;CL:0002159!6.49e-15!13;CL:0002202!7.05e-10!9;CL:0002632!7.05e-10!9;CL:0000068!9.05e-09!3;CL:0000069!9.05e-09!3;CL:0000307!9.05e-09!3;CL:0000377!9.05e-09!3;CL:0002077!1.89e-08!33;CL:0000622!1.91e-08!5;CL:0002328!3.83e-08!3;CL:0000362!5.14e-08!8;CL:0000076!5.34e-08!62;CL:0002621!7.25e-08!3;CL:0002231!1.09e-07!3;CL:0000154!5.01e-07!6 | |ontology_enrichment_celltype=CL:0002076!4.95e-35!43;CL:0000223!1.32e-25!59;CL:0002251!1.40e-17!21;CL:0002368!2.09e-17!13;CL:0000066!3.59e-15!254;CL:0002159!6.49e-15!13;CL:0002202!7.05e-10!9;CL:0002632!7.05e-10!9;CL:0000068!9.05e-09!3;CL:0000069!9.05e-09!3;CL:0000307!9.05e-09!3;CL:0000377!9.05e-09!3;CL:0002077!1.89e-08!33;CL:0000622!1.91e-08!5;CL:0002328!3.83e-08!3;CL:0000362!5.14e-08!8;CL:0000076!5.34e-08!62;CL:0002621!7.25e-08!3;CL:0002231!1.09e-07!3;CL:0000154!5.01e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0002159;8.66e-13;14!CL:0002251;5.51e-12;20!CL:0002076;5.23e-11;42!CL:0002202;2.93e-09;9!CL:0002632;2.93e-09;9!CL:0002166;4.62e-08;3!CL:0000307;6.00e-08;3!CL:0002328;1.51e-07;3!CL:0002252;9.40e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,3.07e-15,42;CL:0002159,8.05e-13,14;CL:0000223,2.50e-12,58;CL:0002251,5.56e-12,20;CL:0000076,1.80e-09,63;CL:0002202,2.81e-09,9;CL:0002632,2.81e-09,9;CL:0000066,4.47e-09,253;CL:0000068,5.22e-08,3;CL:0000069,5.22e-08,3;CL:0000307,5.22e-08,3;CL:0000377,5.22e-08,3;CL:0002166,5.41e-08,3;CL:0002328,1.62e-07,3;CL:0002252,8.67e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000377;6.00e-08;3!UBERON:0009143;6.77e-07;1!CL:0000223;9.91e-07;58 | |||
|ontology_enrichment_disease=DOID:1749!1.96e-17!14 | |ontology_enrichment_disease=DOID:1749!1.96e-17!14 | ||
|ontology_enrichment_disease_v019=DOID:1749;1.07e-22;14!DOID:3151;5.57e-07;1!DOID:3149;5.57e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,8.04e-23,14;DOID:3151,5.58e-07,1;DOID:3149,5.58e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0000161!1.46e-18!35;UBERON:0001004!1.04e-16!72;UBERON:0004119!6.90e-16!169;UBERON:0000925!6.90e-16!169;UBERON:0006595!6.90e-16!169;UBERON:0000166!2.65e-15!21;UBERON:0003102!4.33e-12!95;UBERON:0001007!3.01e-11!155;UBERON:0001555!3.01e-11!155;UBERON:0007026!3.01e-11!155;UBERON:0003343!3.23e-11!4;UBERON:0004785!3.23e-11!4;UBERON:0000165!9.51e-11!28;UBERON:0000930!9.51e-11!28;UBERON:0000065!1.00e-10!53;UBERON:0007196!1.40e-10!14;UBERON:0001558!1.40e-10!14;UBERON:0000344!1.16e-09!12;UBERON:0003126!2.53e-09!7;UBERON:0001005!2.53e-09!7;UBERON:0004921!2.61e-09!129;UBERON:0004185!2.61e-09!129;UBERON:0003729!5.90e-09!5;UBERON:0000974!6.48e-09!10;UBERON:0000365!1.57e-08!5;UBERON:0001723!1.72e-08!3;UBERON:0001033!1.72e-08!3;UBERON:0010056!1.72e-08!3;UBERON:0001444!2.30e-08!48;UBERON:0004815!3.83e-08!3;UBERON:0002031!3.83e-08!3;UBERON:0001949!7.25e-08!3;UBERON:0006562!7.29e-08!11;UBERON:0000072!1.49e-07!46;UBERON:0005910!4.27e-07!6;UBERON:0005178!5.70e-07!34;UBERON:0002224!5.70e-07!34 | |ontology_enrichment_uberon=UBERON:0000161!1.46e-18!35;UBERON:0001004!1.04e-16!72;UBERON:0004119!6.90e-16!169;UBERON:0000925!6.90e-16!169;UBERON:0006595!6.90e-16!169;UBERON:0000166!2.65e-15!21;UBERON:0003102!4.33e-12!95;UBERON:0001007!3.01e-11!155;UBERON:0001555!3.01e-11!155;UBERON:0007026!3.01e-11!155;UBERON:0003343!3.23e-11!4;UBERON:0004785!3.23e-11!4;UBERON:0000165!9.51e-11!28;UBERON:0000930!9.51e-11!28;UBERON:0000065!1.00e-10!53;UBERON:0007196!1.40e-10!14;UBERON:0001558!1.40e-10!14;UBERON:0000344!1.16e-09!12;UBERON:0003126!2.53e-09!7;UBERON:0001005!2.53e-09!7;UBERON:0004921!2.61e-09!129;UBERON:0004185!2.61e-09!129;UBERON:0003729!5.90e-09!5;UBERON:0000974!6.48e-09!10;UBERON:0000365!1.57e-08!5;UBERON:0001723!1.72e-08!3;UBERON:0001033!1.72e-08!3;UBERON:0010056!1.72e-08!3;UBERON:0001444!2.30e-08!48;UBERON:0004815!3.83e-08!3;UBERON:0002031!3.83e-08!3;UBERON:0001949!7.25e-08!3;UBERON:0006562!7.29e-08!11;UBERON:0000072!1.49e-07!46;UBERON:0005910!4.27e-07!6;UBERON:0005178!5.70e-07!34;UBERON:0002224!5.70e-07!34 | ||
|ontology_enrichment_uberon_v019=UBERON:0000974;2.44e-14;6!UBERON:0003343;1.51e-12;4!UBERON:0004785;1.51e-12;4!UBERON:0006562;1.67e-11;2!UBERON:0000165;1.07e-10;28!UBERON:0000161;2.33e-09;19!UBERON:0000166;2.33e-09;19!UBERON:0007196;2.86e-08;15!UBERON:0001558;2.86e-08;15!UBERON:0001043;2.87e-08;3!UBERON:0001723;7.38e-08;3!UBERON:0001033;7.38e-08;3!UBERON:0004815;1.51e-07;3!UBERON:0002031;1.51e-07;3!UBERON:0003126;3.68e-07;7!UBERON:0001005;3.68e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000166,6.42e-14,22;UBERON:0003343,1.17e-12,4;UBERON:0004785,1.17e-12,4;UBERON:0000165,2.91e-10,29;UBERON:0000930,2.91e-10,29;UBERON:0000161,4.43e-10,36;UBERON:0003102,6.76e-10,99;UBERON:0000153,1.26e-09,62;UBERON:0007811,1.26e-09,62;UBERON:0000033,4.39e-09,56;UBERON:0001004,4.51e-09,74;UBERON:0000974,1.12e-08,10;UBERON:0004119,2.02e-08,160;UBERON:0000925,2.02e-08,160;UBERON:0006595,2.02e-08,160;UBERON:0007196,2.46e-08,15;UBERON:0001558,2.46e-08,15;UBERON:0001043,2.58e-08,3;UBERON:0009143,2.58e-08,3;UBERON:0001723,9.08e-08,3;UBERON:0001033,9.08e-08,3;UBERON:0010056,9.08e-08,3;UBERON:0006562,1.16e-07,11;UBERON:0004815,1.62e-07,3;UBERON:0002031,1.62e-07,3;UBERON:0001007,1.70e-07,145;UBERON:0001555,1.70e-07,145;UBERON:0007026,1.70e-07,145;UBERON:0003126,2.87e-07,7;UBERON:0001005,2.87e-07,7;UBERON:0001444,4.81e-07,49 | |||
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| ||
|short_description=p@chr1:204885187..204885205,+ | |short_description=p@chr1:204885187..204885205,+ | ||
}} | }} |
Latest revision as of 02:42, 28 July 2015
Short description: | p@chr1:204885187..204885205, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:204885187..204885205, + |
Coexpression cluster: | C1302_keratoacanthoma_cervical_immature_salivary_malignant_oral_Keratinocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 3.07e-15 | 42 |
general ecto-epithelial cell | 8.05e-13 | 14 |
endodermal cell | 2.50e-12 | 58 |
epithelial cell of alimentary canal | 5.56e-12 | 20 |
squamous epithelial cell | 1.80e-09 | 63 |
epithelial cell of tracheobronchial tree | 2.81e-09 | 9 |
epithelial cell of lower respiratory tract | 2.81e-09 | 9 |
epithelial cell | 4.47e-09 | 253 |
duct epithelial cell | 5.22e-08 | 3 |
branched duct epithelial cell | 5.22e-08 | 3 |
tracheal epithelial cell | 5.22e-08 | 3 |
tracheoblast | 5.22e-08 | 3 |
epithelial cell of Malassez | 5.41e-08 | 3 |
bronchial epithelial cell | 1.62e-07 | 3 |
epithelial cell of esophagus | 8.67e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
oral opening | 6.42e-14 | 22 |
mucosa of oral region | 1.17e-12 | 4 |
respiratory system mucosa | 1.17e-12 | 4 |
mouth | 2.91e-10 | 29 |
stomodeum | 2.91e-10 | 29 |
orifice | 4.43e-10 | 36 |
surface structure | 6.76e-10 | 99 |
anterior region of body | 1.26e-09 | 62 |
craniocervical region | 1.26e-09 | 62 |
head | 4.39e-09 | 56 |
respiratory system | 4.51e-09 | 74 |
neck | 1.12e-08 | 10 |
endoderm-derived structure | 2.02e-08 | 160 |
endoderm | 2.02e-08 | 160 |
presumptive endoderm | 2.02e-08 | 160 |
tracheobronchial tree | 2.46e-08 | 15 |
lower respiratory tract | 2.46e-08 | 15 |
esophagus | 2.58e-08 | 3 |
esophageal region | 2.58e-08 | 3 |
tongue | 9.08e-08 | 3 |
gustatory system | 9.08e-08 | 3 |
future tongue | 9.08e-08 | 3 |
pharynx | 1.16e-07 | 11 |
lower respiratory tract epithelium | 1.62e-07 | 3 |
epithelium of bronchus | 1.62e-07 | 3 |
digestive system | 1.70e-07 | 145 |
digestive tract | 1.70e-07 | 145 |
primitive gut | 1.70e-07 | 145 |
trachea | 2.87e-07 | 7 |
respiratory airway | 2.87e-07 | 7 |
subdivision of head | 4.81e-07 | 49 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 8.04e-23 | 14 |
skin squamous cell carcinoma | 5.58e-07 | 1 |
keratoacanthoma | 5.58e-07 | 1 |