FFCP PHASE1:Hg19::chr12:71003575..71003629,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:71003575..71003629,-
|short_description=p4@PTPRB
|description=CAGE_peak_4_at_PTPRB_5end
|association_with_transcript=0bp_to_ENST00000261266,ENST0000045151...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5787 | |EntrezGene=5787 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9665 | |HGNC=9665 | ||
|TSSclassifier=strong | |||
|UniProt=P23467,F5H3G6,B7ZKS8 | |UniProt=P23467,F5H3G6,B7ZKS8 | ||
|association_with_transcript=0bp_to_ENST00000261266,ENST00000451516,ENST00000538708,ENST00000550857,NM_001206971,NM_001206972,NM_002837,uc001swb.3,uc010sto.1,uc010stp.1_5end | |||
|cluster_id=chr12:71003575..71003629,- | |||
|description=CAGE_peak_4_at_PTPRB_5end | |||
|id=chr12:71003575..71003629,- | |||
|ontology_enrichment_celltype=CL:0000359!3.87e-11!32;CL:0000192!1.11e-07!42;CL:0000514!1.11e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0000359;3.16e-17;32!CL:0000192;1.02e-09;43!CL:1000306;2.57e-08;4!CL:0002547;2.57e-08;4!CL:0002592;2.47e-07;3!CL:0002539;4.64e-07;10!CL:0000064;7.83e-07;3!CL:0000067;7.83e-07;3!CL:0005012;7.83e-07;3!CL:0002304;7.83e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,8.99e-18,32;CL:0000192,7.49e-12,43;CL:0000514,7.49e-12,43;CL:1000306,3.37e-08,4;CL:0002547,3.37e-08,4;CL:0000187,3.52e-08,55;CL:0000680,1.63e-07,58;CL:0000056,1.63e-07,58;CL:0000355,1.63e-07,58;CL:0002592,3.12e-07,3;CL:0002539,3.60e-07,10;CL:0000064,4.07e-07,3;CL:0000067,4.07e-07,3;CL:0005012,4.07e-07,3;CL:0002304,4.07e-07,3;CL:0000393,6.43e-07,61;CL:0000211,6.43e-07,61 | |||
|ontology_enrichment_development_v019=CL:0000514;1.02e-09;43 | |||
|ontology_enrichment_disease=DOID:2394!1.06e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;5.78e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,4.39e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0001637!5.68e-19!42;UBERON:0003509!5.68e-19!42;UBERON:0004572!5.68e-19!42;UBERON:0004872!9.12e-17!84;UBERON:0007023!2.88e-16!115;UBERON:0001981!7.72e-16!60;UBERON:0007500!7.72e-16!60;UBERON:0004537!7.72e-16!60;UBERON:0006965!7.72e-16!60;UBERON:0004573!3.17e-15!33;UBERON:0004571!3.17e-15!33;UBERON:0000055!3.29e-15!69;UBERON:0002049!4.04e-15!79;UBERON:0007798!4.04e-15!79;UBERON:0000477!7.28e-15!286;UBERON:0000025!5.46e-14!194;UBERON:0001009!1.67e-12!113;UBERON:0003075!4.38e-12!86;UBERON:0007284!4.38e-12!86;UBERON:0004111!1.17e-11!241;UBERON:0004535!2.01e-11!110;UBERON:0002346!8.31e-11!90;UBERON:0000483!1.73e-09!309;UBERON:0000119!2.44e-09!312;UBERON:0003914!4.17e-09!118;UBERON:0000947!2.18e-08!21;UBERON:0010191!2.18e-08!21;UBERON:0003056!2.43e-08!61;UBERON:0007100!3.16e-08!27;UBERON:0000468!1.52e-07!659;UBERON:0000073!1.71e-07!94;UBERON:0001016!1.71e-07!94;UBERON:0007625!1.76e-07!11;UBERON:0001049!2.95e-07!57;UBERON:0005068!2.95e-07!57;UBERON:0006241!2.95e-07!57;UBERON:0007135!2.95e-07!57;UBERON:0000481!5.23e-07!347;UBERON:0000948!6.67e-07!24;UBERON:0005498!6.67e-07!24;UBERON:0004140!6.67e-07!24;UBERON:0009881!6.67e-07!24;UBERON:0004141!6.67e-07!24;UBERON:0003084!6.67e-07!24;UBERON:0007005!6.67e-07!24;UBERON:0004139!6.67e-07!24;UBERON:0004291!6.67e-07!24;UBERON:0005743!8.33e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;1.78e-22;42!UBERON:0003509;1.78e-22;42!UBERON:0004572;1.78e-22;42!UBERON:0004573;6.88e-21;33!UBERON:0004571;6.88e-21;33!UBERON:0000947;1.53e-11;21!UBERON:0010191;1.53e-11;21!UBERON:0007500;9.89e-11;56!UBERON:0001981;9.89e-11;56!UBERON:0004537;9.89e-11;56!UBERON:0000488;8.88e-09;4!UBERON:0007625;2.00e-08;11!UBERON:0004797;2.57e-08;4!UBERON:0000415;2.57e-08;4!UBERON:0007240;2.57e-08;4!UBERON:0005742;2.57e-08;4!UBERON:0005734;2.57e-08;4!UBERON:0004664;2.57e-08;4!UBERON:0004663;2.57e-08;4!UBERON:0002049;1.49e-07;75!UBERON:0007798;1.49e-07;75!UBERON:0000055;1.78e-07;65!UBERON:0003498;2.47e-07;3!UBERON:0005985;2.47e-07;3!UBERON:0001621;2.47e-07;3!UBERON:0004237;4.64e-07;10!UBERON:0004695;4.64e-07;10!UBERON:0002111;4.64e-07;10!UBERON:0004178;4.64e-07;10!UBERON:0002118;6.38e-07;5!UBERON:0001778;7.83e-07;3!UBERON:0001775;7.83e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,1.60e-27,42;UBERON:0003509,1.60e-27,42;UBERON:0004572,1.60e-27,42;UBERON:0004573,9.23e-24,33;UBERON:0004571,9.23e-24,33;UBERON:0002049,5.01e-20,78;UBERON:0007798,5.01e-20,78;UBERON:0007500,8.04e-19,59;UBERON:0001981,8.04e-19,59;UBERON:0004537,8.04e-19,59;UBERON:0006965,8.04e-19,59;UBERON:0000055,8.85e-18,68;UBERON:0004872,1.70e-15,83;UBERON:0001009,9.26e-14,112;UBERON:0004535,2.03e-13,109;UBERON:0000947,1.46e-11,21;UBERON:0010191,1.46e-11,21;UBERON:0003498,7.27e-11,5;UBERON:0005985,7.27e-11,5;UBERON:0000025,3.02e-09,192;UBERON:0003914,3.38e-09,117;UBERON:0000488,4.58e-09,4;UBERON:0007625,1.53e-08,11;UBERON:0000415,3.37e-08,4;UBERON:0007240,3.37e-08,4;UBERON:0005742,3.37e-08,4;UBERON:0005734,3.37e-08,4;UBERON:0004664,3.37e-08,4;UBERON:0004663,3.37e-08,4;UBERON:0001048,4.56e-08,160;UBERON:0000483,1.32e-07,306;UBERON:0001134,1.32e-07,62;UBERON:0002036,1.32e-07,62;UBERON:0003082,1.32e-07,62;UBERON:0000119,2.12e-07,309;UBERON:0001621,3.12e-07,3;UBERON:0002385,3.24e-07,64;UBERON:0001015,3.24e-07,64;UBERON:0000383,3.24e-07,64;UBERON:0004237,3.60e-07,10;UBERON:0004695,3.60e-07,10;UBERON:0002111,3.60e-07,10;UBERON:0004178,3.60e-07,10;UBERON:0002118,3.93e-07,5;UBERON:0001778,4.07e-07,3;UBERON:0001775,4.07e-07,3;UBERON:0004797,6.23e-07,7 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,2.6893005858071,4.82155622419182,1.46062018077475,0.975865597581014,0,0,0,0.286235987131057,0,0,0,0,0,0,0.383829398097213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,0,0,0,0,0,3.97046232089085,1.99556457716308,4.3917392846563,0.72038491523742,0,0,0,0,0,0,0,0,0.596287222100115,0,0.347140501607594,3.39184765154406,0,0.275118041940067,1.46296476575767,1.03366703667732,0.71153252537342,1.33888245105868,0,0,0,0,0.81014194788176,0.535798369704479,0.22452937262617,0,0,0,0,0,0,0,0.496971951695318,1.13967460498122,6.48804985984772,3.15520282823695,1.41867352879343,0.560677600142307,0,0.24666754841716,0.311211035399766,0.67355336034844,1.47115712802113,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.19699077692078,0.358779271377724,0,0.635795703478686,0.300091096084402,0.309157587715317,0.772921620136887,0,1.5189869901714,1.16924406193438,0,0,0.161646056818812,0,0.403008392910561,0.169560592310488,0,0,0,0,0,0,0.310983165046111,0.504641701751257,0,0,0,0,0,0,0.354920400119532,1.18009283054671,1.92808823906786,0.992645754591546,1.96091499683166,1.18635309555548,0.674156540800822,0.98110732562673,0.769494313892781,0.738155454624648,0,0,0,0,0.982827216677626,0.590789906681404,0,0.122988438543114,4.28919525746314,0,0,0,0,0,0,5.77325368101093,3.4779121492523,0.939269553886573,0,0.462985512576611,0,0,0,0,0,0,0,0,0,0,0,0,6.40462209264727,3.34584049250259,0,0.144119953416961,0.37872730027914,0,0,0,0,0,0,0,0,0,0.07333828582095,1.29271715757778,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0.602878754119172,2.61460037580088,0.399891964728228,0,0,0,0,0,0,0,0,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0.368738337083406,0,0,0,0,0,0,0,0,0,0.992431231275107,3.06923946576125,2.80660094433074,1.28139149255701,0.511707249066704,0.160853921143607,0,0,0.355123450626254,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0.256450125116389,0,0.976135183992909,0.9273691048295,0,0,0,0,6.42735719376638,0,0,0,0,0,0,0,0,0,0,0,0,0,3.46293581513704,0,5.85263802334569,3.72614221221915,0,1.11194531462352,5.43874569619567,0,0,0,0,0,0,2.35484592059769,0,0,0,4.24583211303964,6.34041284692033,2.10629228119491,0,0.974853958525138,2.11300293513511,0.272999822815972,0,2.26016233240486,1.10273068709225,1.32687795048244,1.75380354101505,0,0,0.202910376962704,1.54911749049875,2.53526042279017,0,0.0982490410131212,0.7133421029625,0.354761064070598,0,0.329294892959902,0,0,0,0,0,1.03558180854457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0.18714054040822,0.73254089635947,0,0,0,0,0,0,1.9882952955326,0.562677665642051,2.11486539543521,0,0,2.19172787076177,0,0,1.1249555075237,0,0.622079175323615,3.32512899245109,0,0,0.0986434056369336,0,0,0.969332746095218,0.371072392647405,0,0,0,0.724999575434793,0.1137934482855,0,0,0,0,0,0,0.361789315876224,0,0.331737779793674,0.295547618953547,2.19385397153973,0,0,0.538651809526579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.794682894901893,0,14.0380215016867,0.141353071433941,0,1.99052386215701,0.353830258013357,0,0,0,0,0.943615861729479,1.60515529459758,2.10838001152805,0,0,0,0.789168805698781,0,0,1.5796644907122,0,0,0,0,0,0,0,0.138674673013139,0,0,0.870592065804026,0.17472666824203,36.2890528515111,0,0.0730893170861856,0.0821154570532092,0.387956065953678,6.70746562855402,0.225980740780532,0.137041924646751,0,1.13959432720582,0,0,0.640358984218058,0,0.288180834308212,0,0,0,0,0,0.135904206073614,0.209205692624666,0,0.288950589901519,0,0.684526894459965,0,1.71906176567983,0,2.23425921017803,0.458320848023367,0.717873024576814,0.599037001496973,1.71690419254628,0.446342914883745,1.2764859772478,1.44119953416961,0,0,0,0,0,0,0,0.408610218334727,0,0,0.415440338029185,0,0,1.57948847310864,0,1.02447419488958,0.314727528809989,0,0,0,0,0,0,0.542999601753713,0,0,1.19730191562487,0.164185041498678,2.04465626142506,0.113312091520126,0.879313402068495,1.32506888912221,0.129282956361551,0.26446520348538,0,0,3.31040978959853,4.08731193259131,6.21358583020793,0,0,0,0,0,0.2506898940227,0.306345576763462,0.655745261419609,0,0.886068179966986,0.122026264901963,0.1251909307065,0.573409195690071,0.332787154610557,1.67660287941735,0.691743174681154,0,0,0.285465333544967,0,0,0,0,0.233713309847224,2.77402930751307,0,0,0,0.457680136793847,0.756154618816195,0,0.591420599958536,1.27437413730962,0,1.24210365501008,0.414706207840855,10.1019851532038,0.521745061811734,1.35231848097497,2.66563648518157,2.84809513243263,0.727394636810238,1.71856891267982,21.8095867142892,3.58286299828754,0,0,0.336749488765919,0,0,0,0,0.453411851024545,0.926089897295336,0.244736704506468,0.71635536432595,0,1.75427239662966,5.83074181621407,0,0,0,0,0.303859956177382,0.691292180758654,0,0,0,0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| ||
|short_description=p4@PTPRB | |||
}} | }} |
Latest revision as of 15:54, 24 September 2015
Short description: | p4@PTPRB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PTPRB_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000261266, ENST00000451516, ENST00000538708, ENST00000550857, NM_001206971, NM_001206972, NM_002837, uc001swb.3, uc010sto.1, uc010stp.1_5end |
EntrezGene: | PTPRB |
HGNC: | 9665 |
UniProt: | P23467F5H3G6B7ZKS8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 8.99e-18 | 32 |
smooth muscle cell | 7.49e-12 | 43 |
smooth muscle myoblast | 7.49e-12 | 43 |
fibroblast of tunica adventitia of artery | 3.37e-08 | 4 |
fibroblast of the aortic adventitia | 3.37e-08 | 4 |
muscle cell | 3.52e-08 | 55 |
muscle precursor cell | 1.63e-07 | 58 |
myoblast | 1.63e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.63e-07 | 58 |
smooth muscle cell of the coronary artery | 3.12e-07 | 3 |
aortic smooth muscle cell | 3.60e-07 | 10 |
ciliated cell | 4.07e-07 | 3 |
ciliated epithelial cell | 4.07e-07 | 3 |
multi-ciliated epithelial cell | 4.07e-07 | 3 |
non-pigmented ciliary epithelial cell | 4.07e-07 | 3 |
electrically responsive cell | 6.43e-07 | 61 |
electrically active cell | 6.43e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 4.39e-10 | 14 |