FFCP PHASE1:Hg19::chr20:3526411..3526416,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:3526411..3526416,+ | |||
|description=CAGE_peak_at_chr20:3526411..3526416,+ | |description=CAGE_peak_at_chr20:3526411..3526416,+ | ||
|id=chr20:3526411..3526416,+ | |id=chr20:3526411..3526416,+ | ||
|ontology_enrichment_celltype=CL:0002076!2.37e-20!43;CL:0000223!9.52e-15!59;CL:0002251!7.12e-14!21;CL:0000066!1.53e-13!254;CL:0002166!1.34e-09!3;CL:0002368!1.92e-09!13;CL:0002621!3.39e-09!3;CL:0002327!2.03e-07!4;CL:0000220!3.02e-07!246;CL:0002159!3.38e-07!13;CL:0002321!4.10e-07!248;CL:0000244!7.39e-07!4;CL:0000731!7.39e-07!4 | |ontology_enrichment_celltype=CL:0002076!2.37e-20!43;CL:0000223!9.52e-15!59;CL:0002251!7.12e-14!21;CL:0000066!1.53e-13!254;CL:0002166!1.34e-09!3;CL:0002368!1.92e-09!13;CL:0002621!3.39e-09!3;CL:0002327!2.03e-07!4;CL:0000220!3.02e-07!246;CL:0002159!3.38e-07!13;CL:0002321!4.10e-07!248;CL:0000244!7.39e-07!4;CL:0000731!7.39e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0002166;9.01e-31;3!CL:0002621;6.10e-30;3!CL:0002327;6.38e-24;4!CL:0002251;2.38e-17;20!CL:0002076;3.17e-16;42!CL:0002159;4.92e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002166,6.66e-31,3;CL:0002621,2.02e-29,3;CL:0002327,6.39e-24,4;CL:0002076,8.74e-18,42;CL:0002251,2.93e-17,20;CL:0000223,1.46e-12,58;CL:0000066,1.37e-11,253;CL:0002159,4.62e-07,14 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!8.83e-09!14 | |ontology_enrichment_disease=DOID:1749!8.83e-09!14 | ||
|ontology_enrichment_disease_v019=DOID:1749;1.20e-11;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.27e-11,14 | |||
|ontology_enrichment_uberon=UBERON:0003729!2.86e-09!5;UBERON:0001949!3.39e-09!3;UBERON:0000365!5.13e-09!5;UBERON:0000161!2.04e-08!35;UBERON:0004119!4.83e-08!169;UBERON:0000925!4.83e-08!169;UBERON:0006595!4.83e-08!169;UBERON:0003102!1.17e-07!95;UBERON:0005910!1.68e-07!6;UBERON:0001911!2.03e-07!4;UBERON:0005333!2.03e-07!4;UBERON:0008425!2.03e-07!4;UBERON:0005311!2.03e-07!4;UBERON:0000166!2.87e-07!21;UBERON:0001708!2.88e-07!4;UBERON:0001704!2.88e-07!4;UBERON:0003343!5.60e-07!4;UBERON:0004785!5.60e-07!4 | |ontology_enrichment_uberon=UBERON:0003729!2.86e-09!5;UBERON:0001949!3.39e-09!3;UBERON:0000365!5.13e-09!5;UBERON:0000161!2.04e-08!35;UBERON:0004119!4.83e-08!169;UBERON:0000925!4.83e-08!169;UBERON:0006595!4.83e-08!169;UBERON:0003102!1.17e-07!95;UBERON:0005910!1.68e-07!6;UBERON:0001911!2.03e-07!4;UBERON:0005333!2.03e-07!4;UBERON:0008425!2.03e-07!4;UBERON:0005311!2.03e-07!4;UBERON:0000166!2.87e-07!21;UBERON:0001708!2.88e-07!4;UBERON:0001704!2.88e-07!4;UBERON:0003343!5.60e-07!4;UBERON:0004785!5.60e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0001949;6.10e-30;3!UBERON:0001911;6.38e-24;4!UBERON:0001708;2.94e-23;4!UBERON:0008895;2.94e-23;4!UBERON:0003729;6.82e-19;13!UBERON:0011159;9.68e-19;5!UBERON:0000161;2.80e-18;19!UBERON:0000166;2.80e-18;19!UBERON:0000486;2.52e-13;12!UBERON:0003929;3.28e-13;7!UBERON:0000165;2.74e-12;28!UBERON:0000344;2.92e-12;20!UBERON:0003350;1.24e-11;8!UBERON:0001828;1.24e-11;8!UBERON:0003343;6.01e-11;4!UBERON:0004785;6.01e-11;4!UBERON:0011137;7.98e-09;11!UBERON:0010323;7.98e-09;11!UBERON:0000974;1.38e-07;6!UBERON:0004807;2.04e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,2.02e-29,3;UBERON:0001911,6.39e-24,4;UBERON:0005333,6.39e-24,4;UBERON:0008425,6.39e-24,4;UBERON:0005311,6.39e-24,4;UBERON:0001708,2.34e-23,4;UBERON:0008895,2.34e-23,4;UBERON:0011159,8.08e-19,5;UBERON:0003729,1.07e-18,13;UBERON:0010188,8.70e-16,6;UBERON:0002539,8.70e-16,6;UBERON:0008816,8.70e-16,6;UBERON:0000166,1.16e-15,22;UBERON:0000033,3.94e-13,56;UBERON:0000161,1.11e-12,36;UBERON:0000076,2.91e-12,8;UBERON:0000344,3.90e-12,20;UBERON:0000165,8.60e-12,29;UBERON:0000930,8.60e-12,29;UBERON:0000153,9.56e-12,62;UBERON:0007811,9.56e-12,62;UBERON:0003350,1.93e-11,8;UBERON:0001828,1.93e-11,8;UBERON:0003343,6.02e-11,4;UBERON:0004785,6.02e-11,4;UBERON:0010323,7.37e-09,11;UBERON:0003102,1.43e-08,99;UBERON:0001004,1.41e-07,74;UBERON:0011137,4.62e-07,14;UBERON:0001444,8.27e-07,49;UBERON:0005153,8.87e-07,37 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,2.75826367343678,0,0.369754010166788,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0.0974370051611986,0.252433774244115,0,0,0,0,0,1.15956511897978,1.09098448236334,1.14721838155602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219500570817251,0,0.603173834469785,0.462942225792648,0,0,0,0,0.234817388471643,0.144366447761074,0,0,0,0,0,0.234004265139238,0.148631162288728,2.81201501960331,5.87937448696008,1.70130116690864,9.94099602001616,9.59091997096074,6.9008882249738,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321707842287215,0,0,0,0,0,0,0,1.40354529212299,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,0,0,0,0,0,0,0,0.145016693914229,0.0852266274161009,0,0.495854746082934,0.768760269460425,1.40373983744043,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0.384888450902048,0,0,0,0.43050537267123,0,0.443430153536676,1.83778720165568,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.724999575434793,0.227586896570999,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0.166211681900156,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.35059857767087,0.34945333648406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0,0,0,0,2.99952979109056,0.151649117541648,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27592034051333,2.94924308369351,0.366857197043358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638812138197976,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0.158013611732727,0,0,0,0.414432328326074,1.87790324803345,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0.11294608203896,0,0,0,0,0,0,0,0,0,0,0,0,0.193373663920732,0.0999411559249289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0,0,0,0,0.112131862580613,0.12729431655633,0,0,0,0,0,0,0.244209805832924,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr20:3526411..3526416,+ | |short_description=p@chr20:3526411..3526416,+ | ||
}} | }} |
Latest revision as of 13:38, 28 July 2015
Short description: | p@chr20:3526411..3526416, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:3526411..3526416, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of Malassez | 6.66e-31 | 3 |
gingival epithelial cell | 2.02e-29 | 3 |
mammary gland epithelial cell | 6.39e-24 | 4 |
endo-epithelial cell | 8.74e-18 | 42 |
epithelial cell of alimentary canal | 2.93e-17 | 20 |
endodermal cell | 1.46e-12 | 58 |
epithelial cell | 1.37e-11 | 253 |
general ecto-epithelial cell | 4.62e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 2.02e-29 | 3 |
mammary gland | 6.39e-24 | 4 |
mammary bud | 6.39e-24 | 4 |
mammary ridge | 6.39e-24 | 4 |
mammary placode | 6.39e-24 | 4 |
jaw skeleton | 2.34e-23 | 4 |
splanchnocranium | 2.34e-23 | 4 |
primary subdivision of cranial skeletal system | 8.08e-19 | 5 |
mouth mucosa | 1.07e-18 | 13 |
protuberance | 8.70e-16 | 6 |
pharyngeal arch | 8.70e-16 | 6 |
embryonic head | 8.70e-16 | 6 |
oral opening | 1.16e-15 | 22 |
head | 3.94e-13 | 56 |
orifice | 1.11e-12 | 36 |
external ectoderm | 2.91e-12 | 8 |
mucosa | 3.90e-12 | 20 |
mouth | 8.60e-12 | 29 |
stomodeum | 8.60e-12 | 29 |
anterior region of body | 9.56e-12 | 62 |
craniocervical region | 9.56e-12 | 62 |
epithelium of mucosa | 1.93e-11 | 8 |
gingiva | 1.93e-11 | 8 |
mucosa of oral region | 6.02e-11 | 4 |
respiratory system mucosa | 6.02e-11 | 4 |
cranial skeletal system | 7.37e-09 | 11 |
surface structure | 1.43e-08 | 99 |
respiratory system | 1.41e-07 | 74 |
axial skeletal system | 4.62e-07 | 14 |
subdivision of head | 8.27e-07 | 49 |
epithelial bud | 8.87e-07 | 37 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.27e-11 | 14 |