FFCP PHASE1:Hg19::chr20:50419071..50419079,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57167 | |EntrezGene=57167 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15924 | |HGNC=15924 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UJQ4 | |UniProt=Q9UJQ4 | ||
|association_with_transcript=-23bp_to_NM_020436,uc002xwh.3,uc002xwi.3,uc010gii.2_5end | |association_with_transcript=-23bp_to_NM_020436,uc002xwh.3,uc002xwi.3,uc010gii.2_5end | ||
|cluster_id=chr20:50419071..50419079,- | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_9_at_SALL4_5end | |description=CAGE_peak_9_at_SALL4_5end | ||
|id=chr20:50419071..50419079,- | |id=chr20:50419071..50419079,- | ||
|ontology_enrichment_celltype=CL:0000148!5.08e-31!10;CL:0000541!5.08e-31!10;CL:0002322!1.05e-26!5;CL:0000039!2.61e-26!7;CL:0000586!2.61e-26!7;CL:0000147!8.11e-22!14;CL:0000710!6.60e-15!20;CL:0000075!1.00e-10!27;CL:0002077!1.49e-08!33;CL:0000540!1.54e-08!6;CL:0000031!1.54e-08!6;CL:0000404!1.54e-08!6;CL:0000133!5.60e-08!59;CL:0000325!4.71e-07!39;CL:0000066!6.52e-07!254 | |ontology_enrichment_celltype=CL:0000148!5.08e-31!10;CL:0000541!5.08e-31!10;CL:0002322!1.05e-26!5;CL:0000039!2.61e-26!7;CL:0000586!2.61e-26!7;CL:0000147!8.11e-22!14;CL:0000710!6.60e-15!20;CL:0000075!1.00e-10!27;CL:0002077!1.49e-08!33;CL:0000540!1.54e-08!6;CL:0000031!1.54e-08!6;CL:0000404!1.54e-08!6;CL:0000133!5.60e-08!59;CL:0000325!4.71e-07!39;CL:0000066!6.52e-07!254 | ||
|ontology_enrichment_celltype_v019=CL:0002322;6.45e-58;5!CL:0002321;1.14e-19;15!CL:0000540;4.80e-13;6!CL:0000404;4.80e-13;6!CL:0000039;3.30e-11;7!CL:0000586;3.30e-11;7!CL:0000148;4.04e-08;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,6.46e-58,5;CL:0000540,4.81e-13,6;CL:0000031,4.81e-13,6;CL:0000404,4.81e-13,6;CL:0000039,2.98e-11,7;CL:0000586,2.98e-11,7;CL:0000047,5.06e-10,8;CL:0000148,3.90e-08,10;CL:0000541,3.90e-08,10 | |||
|ontology_enrichment_development_v019=UBERON:0009117;9.54e-17;10!UBERON:0005564;9.54e-17;10!CL:0000031;4.80e-13;6 | |||
|ontology_enrichment_disease=DOID:3095!1.27e-17!22;DOID:2994!1.27e-17!22 | |ontology_enrichment_disease=DOID:3095!1.27e-17!22;DOID:2994!1.27e-17!22 | ||
|ontology_enrichment_disease_v019=DOID:3095;5.93e-08;22!DOID:2994;5.93e-08;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,6.08e-08,22;DOID:2994,6.08e-08,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!6.20e-16!8;UBERON:0003135!1.60e-11!11;UBERON:0000991!2.67e-08!21;UBERON:0009196!2.67e-08!21;UBERON:0009117!2.67e-08!21;UBERON:0005564!2.67e-08!21;UBERON:0004176!6.80e-08!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;6.34e-10;8!UBERON:0000922;7.53e-09;49!UBERON:0000991;2.64e-08;21!UBERON:0003135;1.84e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,5.80e-10,8;UBERON:0000991,2.71e-08,21;UBERON:0009196,2.71e-08,21;UBERON:0009117,2.71e-08,21;UBERON:0005564,2.71e-08,21;UBERON:0004176,6.08e-08,22;UBERON:0003135,1.73e-07,11 | |||
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|short_description=p9@SALL4 | |short_description=p9@SALL4 | ||
}} | }} |
Latest revision as of 23:59, 16 September 2015
Short description: | p9@SALL4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_SALL4_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | -23bp_to_NM_020436, uc002xwh.3, uc002xwi.3, uc010gii.2_5end |
EntrezGene: | SALL4 |
HGNC: | 15924 |
UniProt: | Q9UJQ4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 6.46e-58 | 5 |
neuron | 4.81e-13 | 6 |
neuroblast | 4.81e-13 | 6 |
electrically signaling cell | 4.81e-13 | 6 |
germ line cell | 2.98e-11 | 7 |
germ cell | 2.98e-11 | 7 |
neuronal stem cell | 5.06e-10 | 8 |
melanocyte | 3.90e-08 | 10 |
melanoblast | 3.90e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
testis | 5.80e-10 | 8 |
gonad | 2.71e-08 | 21 |
indifferent external genitalia | 2.71e-08 | 21 |
indifferent gonad | 2.71e-08 | 21 |
gonad primordium | 2.71e-08 | 21 |
external genitalia | 6.08e-08 | 22 |
male reproductive organ | 1.73e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 6.08e-08 | 22 |
germ cell cancer | 6.08e-08 | 22 |