FFCP PHASE1:Hg19::chr20:50418972..50419029,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57167 | |EntrezGene=57167 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15924 | |HGNC=15924 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UJQ4,A2A2D8 | |UniProt=Q9UJQ4,A2A2D8 | ||
|association_with_transcript=0bp_to_ENST00000217086,ENST00000395997_5end | |association_with_transcript=0bp_to_ENST00000217086,ENST00000395997_5end | ||
|cluster_id=chr20:50418972..50419029,- | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_1_at_SALL4_5end | |description=CAGE_peak_1_at_SALL4_5end | ||
|id=chr20:50418972..50419029,- | |id=chr20:50418972..50419029,- | ||
|ontology_enrichment_celltype=CL:0000148!4.86e-14!10;CL:0000541!4.86e-14!10;CL:0000039!1.25e-13!7;CL:0000586!1.25e-13!7;CL:0000147!1.69e-13!14;CL:0002322!9.78e-11!5;CL:0000066!1.64e-10!254;CL:0000133!8.82e-10!59;CL:0000710!1.49e-08!20;CL:0000333!2.53e-08!41;CL:0000221!6.66e-08!71;CL:0000075!7.81e-07!27 | |ontology_enrichment_celltype=CL:0000148!4.86e-14!10;CL:0000541!4.86e-14!10;CL:0000039!1.25e-13!7;CL:0000586!1.25e-13!7;CL:0000147!1.69e-13!14;CL:0002322!9.78e-11!5;CL:0000066!1.64e-10!254;CL:0000133!8.82e-10!59;CL:0000710!1.49e-08!20;CL:0000333!2.53e-08!41;CL:0000221!6.66e-08!71;CL:0000075!7.81e-07!27 | ||
|ontology_enrichment_celltype_v019=CL:0000039;5.59e-27;7!CL:0000586;5.59e-27;7!CL:0002322;7.70e-21;5!CL:0000148;8.70e-18;10!CL:0000147;2.03e-12;14!CL:0000710;2.16e-08;20!CL:0002535;2.60e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,5.93e-27,7;CL:0000586,5.93e-27,7;CL:0002322,7.56e-21,5;CL:0000148,7.85e-18,10;CL:0000541,7.85e-18,10;CL:0000147,1.89e-12,14;CL:0000066,4.49e-09,253;CL:0000710,2.06e-08,20;CL:0002535,2.91e-08,2;CL:0000047,4.38e-08,8 | |||
|ontology_enrichment_development_v019=UBERON:0009117;4.15e-18;10!UBERON:0005564;4.15e-18;10 | |||
|ontology_enrichment_disease=DOID:3095!8.98e-12!22;DOID:2994!8.98e-12!22;DOID:0050687!4.94e-08!143;DOID:305!1.46e-07!106 | |ontology_enrichment_disease=DOID:3095!8.98e-12!22;DOID:2994!8.98e-12!22;DOID:0050687!4.94e-08!143;DOID:305!1.46e-07!106 | ||
|ontology_enrichment_disease_v019=DOID:3095;4.05e-16;22!DOID:2994;4.05e-16;22!DOID:4362;4.78e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,4.16e-16,22;DOID:2994,4.16e-16,22;DOID:305,1.22e-10,106;DOID:0050687,1.80e-10,143;DOID:4362,4.39e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0000473!2.52e-08!8;UBERON:0000466!1.61e-07!126;UBERON:0003886!2.67e-07!63;UBERON:0005409!6.51e-07!35;UBERON:0004458!6.81e-07!49 | |ontology_enrichment_uberon=UBERON:0000473!2.52e-08!8;UBERON:0000466!1.61e-07!126;UBERON:0003886!2.67e-07!63;UBERON:0005409!6.51e-07!35;UBERON:0004458!6.81e-07!49 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;9.30e-17;8!UBERON:0003135;5.23e-12;11!UBERON:0006955;2.60e-08;2!UBERON:0004801;2.60e-08;2!UBERON:0000991;4.36e-08;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.26e-16,8;UBERON:0003135,6.51e-12,11;UBERON:0006955,2.91e-08,2;UBERON:0004801,2.91e-08,2;UBERON:0000991,4.97e-08,21;UBERON:0009196,4.97e-08,21;UBERON:0009117,4.97e-08,21;UBERON:0005564,4.97e-08,21;UBERON:0002323,9.18e-08,46;UBERON:0004176,1.28e-07,22;UBERON:0004458,3.71e-07,49 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,1.47440361900905,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0.286235987131057,0.684372125364421,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.72038491523742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225222960966644,0,0,0,0,0,0,0,0.12663051166458,0.662045904066094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485618833104395,0,0,0.245668634623536,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,0,0,0,37.080006663397,39.8914602647671,31.837140346248,29.4397396243652,41.8852612453543,38.687600062038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0.982827216677626,0.590789906681404,0,2.21379189377604,0.171567810298526,0,0,0,0.277765335475589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.761974731506028,3.81988425558278,0,1.71072446022705,0.822619941626588,1.20137223137567,1.42913216315289,0,0.43596006883328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.871533458600294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256278298511402,0,0.321707842287215,0,0,0,0,0,0,0.846016147141356,0,0,0,0,0,0,0.308061348417659,0.784349769176855,0,0,0,0,0,0,0,0.501689773854853,0,0.831076008928724,0,0,0,0.256450125116389,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0,0.429680979473094,0,0.0852266274161009,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.359744915166629,0,0.471249609382746,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286822704408103,0,0,0,0,0,0,2.44954304171488,0,0,1.08890984861323,0,1.29151611801369,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,14.4212496022089,6.73735898684351,1.47024129588619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.82530504397664,0,0,0,0,0,0,0,0,0,0,0,0,2.01546198283421,0,0,0,0,0,0,0,0,0,0,0,0,0.520855522170466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0,0,17.9839845422687,8.7064915077479,11.0820319360448,0,0,0,0,0,0,0,0,0,0,0,0,0,0.565412285735763,0,0,0,0,0,0,0,0,0,0,0,4.10895699757388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.26353937109047,0,0,0,0.0730893170861856,0,0,0,0.225980740780532,0,0.19871461170299,0,3.91102765469606,0,0,1.19885765749278,0.864542502924636,8.81931790477551,19.561829756264,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,1.39775300349294,0,0,0,0,22.1342304102162,0.315132729228895,0,0.0674035438541849,0.590564889088493,0,0,0,24.1129722697529,35.0725563322946,33.2352270423348,0,0,0,0,0,0.209818352539992,0,0,0.767660789277781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0.327872630709804,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47463745252232,0,0,0,0,0,0,0,0,0.511577485214607,0,0.629063767423586,0,0,0,0,0,0.318004350653419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.42864100133121,0,0.739280431085226,0,0,0,0,0,0,0,0.527613733078862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.72653191953094,0,0,0,0.714765441766563,2.05417695252545,5.46334699230189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.87151570769685,0,4.99464381265788,0,2.74851291863573,0,0.0771741581079447,0.655678681511872,0,0,0,0,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0,0.788857810965923,0,0,0.5290268405154,0,0,0,29.2706105617383,22.9457701123761,13.9368351112581,20.4997547781383,27.2561753370872,19.0222442037129,14.2903297396654,1.21245917149183,1.07185652062471,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.84911440138411,0.106727345877715,0,0,0,0,0,0,0,0 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|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,1.47440361900905,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0.286235987131057,0.684372125364421,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.72038491523742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225222960966644,0,0,0,0,0,0,0,0.12663051166458,0.662045904066094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485618833104395,0,0,0.245668634623536,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,0,0,0,37.080006663397,39.8914602647671,31.837140346248,29.4397396243652,41.8852612453543,38.687600062038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0.982827216677626,0.590789906681404,0,2.21379189377604,0.171567810298526,0,0,0,0.277765335475589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.761974731506028,3.81988425558278,0,1.71072446022705,0.822619941626588,1.20137223137567,1.42913216315289,0,0.43596006883328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.871533458600294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256278298511402,0,0.321707842287215,0,0,0,0,0,0,0.846016147141356,0,0,0,0,0,0,0.308061348417659,0.784349769176855,0,0,0,0,0,0,0,0.501689773854853,0,0.831076008928724,0,0,0,0.256450125116389,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0,0.429680979473094,0,0.0852266274161009,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.359744915166629,0,0.471249609382746,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286822704408103,0,0,0,0,0,0,2.44954304171488,0,0,1.08890984861323,0,1.29151611801369,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,14.4212496022089,6.73735898684351,1.47024129588619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.82530504397664,0,0,0,0,0,0,0,0,0,0,0,0,2.01546198283421,0,0,0,0,0,0,0,0,0,0,0,0,0.520855522170466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0,0,17.9839845422687,8.7064915077479,11.0820319360448,0,0,0,0,0,0,0,0,0,0,0,0,0,0.565412285735763,0,0,0,0,0,0,0,0,0,0,0,4.10895699757388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.26353937109047,0,0,0,0.0730893170861856,0,0,0,0.225980740780532,0,0.19871461170299,0,3.91102765469606,0,0,1.19885765749278,0.864542502924636,8.81931790477551,19.561829756264,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,1.39775300349294,0,0,0,0,22.1342304102162,0.315132729228895,0,0.0674035438541849,0.590564889088493,0,0,0,24.1129722697529,35.0725563322946,33.2352270423348,0,0,0,0,0,0.209818352539992,0,0,0.767660789277781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0.327872630709804,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47463745252232,0,0,0,0,0,0,0,0,0.511577485214607,0,0.629063767423586,0,0,0,0,0,0.318004350653419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.42864100133121,0,0.739280431085226,0,0,0,0,0,0,0,0.527613733078862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.72653191953094,0,0,0,0.714765441766563,2.05417695252545,5.46334699230189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.87151570769685,0,4.99464381265788,0,2.74851291863573,0,0.0771741581079447,0.655678681511872,0,0,0,0,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0,0.788857810965923,0,0,0.5290268405154,0,0,0,29.2706105617383,22.9457701123761,13.9368351112581,20.4997547781383,27.2561753370872,19.0222442037129,14.2903297396654,1.21245917149183,1.07185652062471,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.84911440138411,0.106727345877715,0,0,0,0,0,0,0,0 | ||
|short_description=p1@SALL4 | |short_description=p1@SALL4 | ||
}} | }} |
Latest revision as of 23:58, 16 September 2015
Short description: | p1@SALL4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SALL4_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 0bp_to_ENST00000217086, ENST00000395997_5end |
EntrezGene: | SALL4 |
HGNC: | 15924 |
UniProt: | Q9UJQ4A2A2D8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 5.93e-27 | 7 |
germ cell | 5.93e-27 | 7 |
embryonic stem cell | 7.56e-21 | 5 |
melanocyte | 7.85e-18 | 10 |
melanoblast | 7.85e-18 | 10 |
pigment cell | 1.89e-12 | 14 |
epithelial cell | 4.49e-09 | 253 |
neurecto-epithelial cell | 2.06e-08 | 20 |
epithelial cell of cervix | 2.91e-08 | 2 |
neuronal stem cell | 4.38e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
testis | 1.26e-16 | 8 |
male reproductive organ | 6.51e-12 | 11 |
uterine epithelium | 2.91e-08 | 2 |
cervix epithelium | 2.91e-08 | 2 |
gonad | 4.97e-08 | 21 |
indifferent external genitalia | 4.97e-08 | 21 |
indifferent gonad | 4.97e-08 | 21 |
gonad primordium | 4.97e-08 | 21 |
body cavity | 9.18e-08 | 46 |
external genitalia | 1.28e-07 | 22 |
body cavity or lining | 3.71e-07 | 49 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 4.16e-16 | 22 |
germ cell cancer | 4.16e-16 | 22 |
carcinoma | 1.22e-10 | 106 |
cell type cancer | 1.80e-10 | 143 |
cervical cancer | 4.39e-07 | 5 |