FFCP PHASE1:Hg19::chr9:139553916..139553927,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr9:139553916..139553927,+ | |||
|description=CAGE_peak_at_chr9:139553916..139553927,+ | |description=CAGE_peak_at_chr9:139553916..139553927,+ | ||
|id=chr9:139553916..139553927,+ | |id=chr9:139553916..139553927,+ | ||
|ontology_enrichment_celltype=CL:0002139!1.43e-60!24;CL:0000071!1.72e-50!18;CL:0002546!1.72e-50!18;CL:0000115!1.31e-44!35;CL:0002078!1.90e-34!44;CL:0000213!1.91e-25!57;CL:0000215!1.91e-25!57;CL:0002543!3.52e-25!6;CL:1000413!1.56e-16!9;CL:0002144!2.51e-14!3;CL:0002618!4.91e-13!3;CL:0000076!3.97e-12!62;CL:0005020!5.73e-12!6;CL:0002138!5.73e-12!6;CL:0005022!5.73e-12!6;CL:0002544!1.06e-11!6;CL:0000222!1.12e-09!119 | |ontology_enrichment_celltype=CL:0002139!1.43e-60!24;CL:0000071!1.72e-50!18;CL:0002546!1.72e-50!18;CL:0000115!1.31e-44!35;CL:0002078!1.90e-34!44;CL:0000213!1.91e-25!57;CL:0000215!1.91e-25!57;CL:0002543!3.52e-25!6;CL:1000413!1.56e-16!9;CL:0002144!2.51e-14!3;CL:0002618!4.91e-13!3;CL:0000076!3.97e-12!62;CL:0005020!5.73e-12!6;CL:0002138!5.73e-12!6;CL:0005022!5.73e-12!6;CL:0002544!1.06e-11!6;CL:0000222!1.12e-09!119 | ||
|ontology_enrichment_celltype_v019=CL:0002139;2.73e-61;24!CL:0000071;7.31e-46;18!CL:0000115;4.28e-38;36!CL:0002144;5.98e-33;3!CL:0002078;1.83e-29;45!CL:0000213;1.41e-18;58!CL:0000215;1.41e-18;58!CL:0002138;8.58e-17;6!CL:0002543;2.81e-16;6!CL:0002544;5.26e-16;6!CL:0000037;1.25e-11;1!CL:0001024;1.25e-11;1!CL:1000413;7.20e-11;9!CL:0000076;2.80e-07;63 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,3.20e-61,24;CL:0000115,2.49e-47,36;CL:0000071,8.14e-46,18;CL:0002546,8.14e-46,18;CL:0002078,1.62e-37,45;CL:0002144,6.66e-33,3;CL:0000213,1.04e-28,58;CL:0000215,1.04e-28,58;CL:0005020,9.06e-17,6;CL:0002138,9.06e-17,6;CL:0005022,9.06e-17,6;CL:0002543,2.74e-16,6;CL:0002544,5.69e-16,6;CL:0000222,8.85e-13,121;CL:0000076,2.54e-12,63;CL:0001024,1.32e-11,1;CL:1000413,7.58e-11,9 | |||
|ontology_enrichment_development_v019=CL:0002546;7.31e-46;18!CL:0005022;8.58e-17;6!CL:0000222;4.71e-07;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!1.72e-50!18;UBERON:0004638!1.72e-50!18;UBERON:0004852!1.72e-50!18;UBERON:0000487!1.20e-40!22;UBERON:0006914!2.46e-35!25;UBERON:0000055!4.69e-20!69;UBERON:0002049!6.77e-17!79;UBERON:0007798!6.77e-17!79;UBERON:0001638!1.40e-16!9;UBERON:0003920!1.40e-16!9;UBERON:0004582!1.40e-16!9;UBERON:0003915!1.56e-16!9;UBERON:0004700!1.56e-16!9;UBERON:0001917!1.56e-16!9;UBERON:0001981!1.70e-14!60;UBERON:0007500!1.70e-14!60;UBERON:0004537!1.70e-14!60;UBERON:0006965!1.70e-14!60;UBERON:0001915!2.51e-14!3;UBERON:0001982!2.51e-14!3;UBERON:0004872!4.91e-12!84;UBERON:0004535!8.65e-11!110;UBERON:0002465!1.39e-10!10;UBERON:0001009!2.22e-10!113;UBERON:0001473!5.56e-09!8;UBERON:0004536!5.56e-09!8;UBERON:0006558!5.56e-09!8;UBERON:0002066!5.33e-08!5;UBERON:0003914!1.82e-07!118 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;7.31e-46;18!UBERON:0001986;7.31e-46;18!UBERON:0004852;7.31e-46;18!UBERON:0000487;2.39e-37;22!UBERON:0010523;5.98e-33;3!UBERON:0001915;5.98e-33;3!UBERON:0001982;5.98e-33;3!UBERON:0006914;9.54e-33;25!UBERON:0000490;7.69e-24;33!UBERON:0000055;5.67e-15;65!UBERON:0001473;9.64e-13;8!UBERON:0004536;9.64e-13;8!UBERON:0006558;9.64e-13;8!UBERON:0001638;4.77e-11;9!UBERON:0003920;4.77e-11;9!UBERON:0004582;4.77e-11;9!UBERON:0003915;7.20e-11;9!UBERON:0004700;7.20e-11;9!UBERON:0001917;7.20e-11;9!UBERON:0002465;2.66e-10;10!UBERON:0002049;7.04e-10;75!UBERON:0007798;7.04e-10;75!UBERON:0007500;9.76e-10;56!UBERON:0001981;9.76e-10;56!UBERON:0004537;9.76e-10;56!UBERON:0004535;2.25e-07;109!UBERON:0003914;3.53e-07;74!UBERON:0001009;8.61e-07;112 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,8.14e-46,18;UBERON:0001986,8.14e-46,18;UBERON:0004852,8.14e-46,18;UBERON:0000487,2.61e-37,22;UBERON:0010523,6.66e-33,3;UBERON:0001915,6.66e-33,3;UBERON:0001982,6.66e-33,3;UBERON:0006914,1.03e-32,25;UBERON:0000055,1.47e-20,68;UBERON:0002049,1.05e-17,78;UBERON:0007798,1.05e-17,78;UBERON:0007500,3.10e-13,59;UBERON:0001981,3.10e-13,59;UBERON:0004537,3.10e-13,59;UBERON:0006965,3.10e-13,59;UBERON:0001473,1.00e-12,8;UBERON:0004536,1.00e-12,8;UBERON:0006558,1.00e-12,8;UBERON:0004535,3.61e-12,109;UBERON:0001009,8.55e-12,112;UBERON:0001638,4.69e-11,9;UBERON:0003920,4.69e-11,9;UBERON:0004582,4.69e-11,9;UBERON:0003915,7.58e-11,9;UBERON:0004700,7.58e-11,9;UBERON:0001917,7.58e-11,9;UBERON:0002465,2.74e-10,10;UBERON:0004872,4.51e-09,83;UBERON:0003914,1.46e-07,117 | |||
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| ||
|short_description=p@chr9:139553916..139553927,+ | |short_description=p@chr9:139553916..139553927,+ | ||
}} | }} |
Latest revision as of 00:21, 1 August 2015
Short description: | p@chr9:139553916..139553927, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr9:139553916..139553927, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 3.20e-61 | 24 |
endothelial cell | 2.49e-47 | 36 |
blood vessel endothelial cell | 8.14e-46 | 18 |
embryonic blood vessel endothelial progenitor cell | 8.14e-46 | 18 |
meso-epithelial cell | 1.62e-37 | 45 |
capillary endothelial cell | 6.66e-33 | 3 |
lining cell | 1.04e-28 | 58 |
barrier cell | 1.04e-28 | 58 |
lymphangioblast | 9.06e-17 | 6 |
endothelial cell of lymphatic vessel | 9.06e-17 | 6 |
vascular lymphangioblast | 9.06e-17 | 6 |
vein endothelial cell | 2.74e-16 | 6 |
aortic endothelial cell | 5.69e-16 | 6 |
mesodermal cell | 8.85e-13 | 121 |
squamous epithelial cell | 2.54e-12 | 63 |
CD34-positive, CD38-negative hematopoietic stem cell | 1.32e-11 | 1 |
endothelial cell of artery | 7.58e-11 | 9 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 8.14e-46 | 18 |
endothelium | 8.14e-46 | 18 |
cardiovascular system endothelium | 8.14e-46 | 18 |
simple squamous epithelium | 2.61e-37 | 22 |
microcirculatory vessel | 6.66e-33 | 3 |
endothelium of capillary | 6.66e-33 | 3 |
capillary | 6.66e-33 | 3 |
squamous epithelium | 1.03e-32 | 25 |
vessel | 1.47e-20 | 68 |
vasculature | 1.05e-17 | 78 |
vascular system | 1.05e-17 | 78 |
epithelial tube open at both ends | 3.10e-13 | 59 |
blood vessel | 3.10e-13 | 59 |
blood vasculature | 3.10e-13 | 59 |
vascular cord | 3.10e-13 | 59 |
lymphatic vessel | 1.00e-12 | 8 |
lymph vasculature | 1.00e-12 | 8 |
lymphatic part of lymphoid system | 1.00e-12 | 8 |
cardiovascular system | 3.61e-12 | 109 |
circulatory system | 8.55e-12 | 112 |
vein | 4.69e-11 | 9 |
venous blood vessel | 4.69e-11 | 9 |
venous system | 4.69e-11 | 9 |
endothelial tube | 7.58e-11 | 9 |
arterial system endothelium | 7.58e-11 | 9 |
endothelium of artery | 7.58e-11 | 9 |
lymphoid system | 2.74e-10 | 10 |
splanchnic layer of lateral plate mesoderm | 4.51e-09 | 83 |
epithelial tube | 1.46e-07 | 117 |