FFCP PHASE1:Hg19::chr9:140349856..140349859,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26012 | |EntrezGene=26012 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=29843 | |HGNC=29843 | ||
|TSSclassifier=strong | |||
|UniProt=Q6X4W1 | |UniProt=Q6X4W1 | ||
|association_with_transcript=-107bp_to_AL389944_5end | |association_with_transcript=-107bp_to_AL389944_5end | ||
|cluster_id=chr9:140349856..140349859,- | |||
|coexpression_cluster_id=C78 | |||
|description=CAGE_peak_36_at_NELF_5end | |description=CAGE_peak_36_at_NELF_5end | ||
|id=chr9:140349856..140349859,- | |id=chr9:140349856..140349859,- | ||
|ontology_enrichment_celltype=CL:0002367!8.28e-14!2;CL:0000322!1.10e-09!3 | |ontology_enrichment_celltype=CL:0002367!8.28e-14!2;CL:0000322!1.10e-09!3 | ||
|ontology_enrichment_celltype_v019=CL:0000322;5.96e-34;3!CL:0002202;2.45e-12;9!CL:0002632;2.45e-12;9!CL:0002368;5.70e-09;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000322,5.96e-34,3;CL:0002202,2.45e-12,9;CL:0002632,2.45e-12,9;CL:0002368,5.70e-09,13 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1325!3.53e-15!7;DOID:3904!3.53e-15!7;DOID:3910!7.30e-14!2;DOID:3905!4.94e-12!9;DOID:1324!1.35e-07!15;DOID:5409!1.80e-07!4;DOID:0050615!3.55e-07!16 | |||
|ontology_enrichment_disease_v019=DOID:3910;4.52e-50;2!DOID:3908;5.15e-21;5!DOID:1325;1.91e-15;7!DOID:3904;1.91e-15;7!DOID:3905;2.45e-12;9!DOID:0060058;2.73e-11;10!DOID:1324;5.93e-08;15!DOID:0050615;1.54e-07;16 | |||
|ontology_enrichment_disease_v019_2=DOID:3910,4.52e-50,2;DOID:3908,5.15e-21,5;DOID:1325,1.91e-15,7;DOID:3904,1.91e-15,7;DOID:3905,2.45e-12,9;DOID:0060058,2.73e-11,10;DOID:1324,5.93e-08,15;DOID:0050615,1.54e-07,16 | |||
|ontology_enrichment_uberon=UBERON:0004903!7.30e-14!2;UBERON:0002173!7.30e-14!2;UBERON:0002186!7.30e-14!2;UBERON:0005969!8.28e-14!2;UBERON:0003956!8.28e-14!2;UBERON:0004821!1.10e-09!3;UBERON:0003215!1.10e-09!3;UBERON:0002299!1.10e-09!3;UBERON:0006524!1.10e-09!3;UBERON:0008874!1.10e-09!3;UBERON:0002169!1.10e-09!3;UBERON:0004894!1.10e-09!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0004903;4.52e-50;2!UBERON:0002173;4.52e-50;2!UBERON:0002186;4.52e-50;2!UBERON:0004821;5.96e-34;3!UBERON:0007499;5.96e-34;3!UBERON:0003215;5.96e-34;3!UBERON:0010368;5.96e-34;3!UBERON:0009911;5.96e-34;3!UBERON:0002299;5.96e-34;3!UBERON:0006524;5.96e-34;3!UBERON:0008874;5.96e-34;3!UBERON:0002169;5.96e-34;3!UBERON:0004894;5.96e-34;3!UBERON:0009856;7.14e-26;4!UBERON:0000058;3.02e-11;10!UBERON:0007196;5.93e-08;15!UBERON:0001558;5.93e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,4.52e-50,2;UBERON:0002173,4.52e-50,2;UBERON:0002186,4.52e-50,2;UBERON:0004821,5.96e-34,3;UBERON:0003215,5.96e-34,3;UBERON:0010368,5.96e-34,3;UBERON:0009911,5.96e-34,3;UBERON:0002299,5.96e-34,3;UBERON:0006524,5.96e-34,3;UBERON:0008874,5.96e-34,3;UBERON:0002169,5.96e-34,3;UBERON:0004894,5.96e-34,3;UBERON:0007196,5.93e-08,15;UBERON:0001558,5.93e-08,15 | |||
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|short_description=p36@NELF | |short_description=p36@NELF | ||
}} | }} |
Latest revision as of 17:17, 16 September 2015
Short description: | p36@NELF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_36_at_NELF_5end |
Coexpression cluster: | C78_lymphoma_plasma_tonsil_appendix_lymph_seminal_trachea |
Association with transcript: | -107bp_to_AL389944_5end |
EntrezGene: | NELF |
HGNC: | 29843 |
UniProt: | Q6X4W1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 5.96e-34 | 3 |
epithelial cell of tracheobronchial tree | 2.45e-12 | 9 |
epithelial cell of lower respiratory tract | 2.45e-12 | 9 |
respiratory epithelial cell | 5.70e-09 | 13 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 4.52e-50 | 2 |
alveolar duct | 4.52e-50 | 2 |
bronchiole | 4.52e-50 | 2 |
pulmonary alveolus epithelium | 5.96e-34 | 3 |
alveolus | 5.96e-34 | 3 |
pulmonary lobule | 5.96e-34 | 3 |
lobule | 5.96e-34 | 3 |
alveolus of lung | 5.96e-34 | 3 |
alveolar system | 5.96e-34 | 3 |
pulmonary acinus | 5.96e-34 | 3 |
alveolar sac | 5.96e-34 | 3 |
alveolar wall | 5.96e-34 | 3 |
tracheobronchial tree | 5.93e-08 | 15 |
lower respiratory tract | 5.93e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 4.52e-50 | 2 |
non-small cell lung carcinoma | 5.15e-21 | 5 |
bronchus cancer | 1.91e-15 | 7 |
bronchogenic carcinoma | 1.91e-15 | 7 |
lung carcinoma | 2.45e-12 | 9 |
lymphoma | 2.73e-11 | 10 |
lung cancer | 5.93e-08 | 15 |
respiratory system cancer | 1.54e-07 | 16 |