FFCP PHASE1:Hg19::chr2:73144739..73144750,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2016 | |EntrezGene=2016 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3340 | |HGNC=3340 | ||
|TSSclassifier=strong | |||
|UniProt=Q04741 | |UniProt=Q04741 | ||
|association_with_transcript=135bp_to_ENST00000258106,NM_004097,uc002sin.1_5end | |association_with_transcript=135bp_to_ENST00000258106,NM_004097,uc002sin.1_5end | ||
|cluster_id=chr2:73144739..73144750,+ | |||
|coexpression_cluster_id=C2705 | |||
|description=CAGE_peak_4_at_EMX1_5end | |description=CAGE_peak_4_at_EMX1_5end | ||
|id=chr2:73144739..73144750,+ | |id=chr2:73144739..73144750,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003918;6.48e-10;10!UBERON:0007687;6.48e-10;10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000956!1.36e-38!25;UBERON:0000203!1.36e-38!25;UBERON:0001893!6.26e-38!34;UBERON:0001869!7.27e-37!32;UBERON:0002791!3.28e-35!33;UBERON:0002619!4.68e-35!22;UBERON:0001950!3.51e-34!20;UBERON:0002020!9.09e-31!34;UBERON:0003528!9.09e-31!34;UBERON:0002780!1.15e-30!41;UBERON:0001890!1.15e-30!41;UBERON:0006240!1.15e-30!41;UBERON:0003080!8.00e-30!42;UBERON:0001017!1.20e-22!82;UBERON:0005743!2.70e-21!86;UBERON:0001049!1.12e-20!57;UBERON:0005068!1.12e-20!57;UBERON:0006241!1.12e-20!57;UBERON:0007135!1.12e-20!57;UBERON:0002616!8.37e-20!59;UBERON:0000955!9.93e-20!69;UBERON:0006238!9.93e-20!69;UBERON:0003056!5.46e-19!61;UBERON:0000073!1.14e-18!94;UBERON:0001016!1.14e-18!94;UBERON:0002021!4.97e-18!5;UBERON:0003075!7.94e-15!86;UBERON:0007284!7.94e-15!86;UBERON:0000200!3.40e-14!6;UBERON:0002346!6.39e-14!90;UBERON:0001871!1.72e-10!7;UBERON:0002771!1.83e-10!3;UBERON:0000033!1.05e-09!123;UBERON:0004121!2.25e-09!169;UBERON:0000924!5.24e-09!173;UBERON:0006601!5.24e-09!173;UBERON:0000153!5.32e-09!129;UBERON:0007811!5.32e-09!129;UBERON:0007023!7.93e-09!115;UBERON:0001872!6.75e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0002021;6.50e-40;5!UBERON:0002902;4.10e-23;1!UBERON:0009899;4.10e-23;1!UBERON:0001950;4.28e-17;20!UBERON:0002619;1.19e-15;22!UBERON:0000956;6.75e-14;25!UBERON:0000203;6.75e-14;25!UBERON:0002791;3.75e-10;32!UBERON:0001869;3.75e-10;32!UBERON:0003528;5.94e-10;34!UBERON:0002020;5.94e-10;34!UBERON:0001893;7.96e-09;34!UBERON:0001870;1.30e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,5.69e-40,5;UBERON:0002902,3.28e-23,1;UBERON:0009899,3.28e-23,1;UBERON:0001950,4.46e-17,20;UBERON:0002619,1.24e-15,22;UBERON:0000956,6.98e-14,25;UBERON:0000203,6.98e-14,25;UBERON:0002791,5.00e-11,32;UBERON:0001869,5.00e-11,32;UBERON:0003528,2.03e-10,34;UBERON:0002020,2.03e-10,34;UBERON:0001893,2.03e-10,34;UBERON:0002780,9.61e-09,41;UBERON:0001890,9.61e-09,41;UBERON:0003080,9.61e-09,41;UBERON:0006240,9.61e-09,41;UBERON:0001870,1.51e-08,3;UBERON:0000955,4.96e-08,68;UBERON:0006238,4.96e-08,68;UBERON:0000073,7.16e-07,53;UBERON:0002616,7.16e-07,53;UBERON:0001017,8.73e-07,81 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0.125542639594803,0.0764134057479513,0.0821005894499457,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70272798147026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368965315629341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.837581326671744,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0.451199612907412,0,0,0,0,0,0,0,0,0,0,0,0.831076008928724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.649376687132959,3.99227596002388,0,0,0,0,0,0,0.689486746482929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0,0.067401132980677,0,0,0,0,0,0,0,0.91821828489147,0.063186579628488,0.150323419414493,0.103688191397247,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0,0,0,0,0,1.07628353124994,0.195551382734803,0,0,0,0.432271251462318,0,1.37275998289572,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157566364614447,0,0,0.0984274815147488,0,0,0.136203406111576,0.160753148465019,0.137539436597234,0,0,0,0.607495566580247,0,3.07342258466873,3.25218446436988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.250381861413,0,0,0,0,0,0,0,0,0,0.579684114443301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.857766365499703,0.260994291965212,0,0,0,0.358177682162975,0,0,0,0,0,0.512483037175893,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321146125482298,1.41696576325585,0.638535436228605,0.205116364240755,2.26864526599546,1.45230230174858,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.945526184657525,0,0.206686796501184,0.824405532520789,0,0,0,0,0,0,0,0,0,0,0,0,0,0.986591603442736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0.118920090777569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.747906392100062,0,0,0,0,0,0,0,0.633492505057185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0.125542639594803,0.0764134057479513,0.0821005894499457,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70272798147026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368965315629341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.837581326671744,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0.451199612907412,0,0,0,0,0,0,0,0,0,0,0,0.831076008928724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.649376687132959,3.99227596002388,0,0,0,0,0,0,0.689486746482929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0,0.067401132980677,0,0,0,0,0,0,0,0.91821828489147,0.063186579628488,0.150323419414493,0.103688191397247,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0,0,0,0,0,1.07628353124994,0.195551382734803,0,0,0,0.432271251462318,0,1.37275998289572,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157566364614447,0,0,0.0984274815147488,0,0,0.136203406111576,0.160753148465019,0.137539436597234,0,0,0,0.607495566580247,0,3.07342258466873,3.25218446436988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.250381861413,0,0,0,0,0,0,0,0,0,0.579684114443301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.857766365499703,0.260994291965212,0,0,0,0.358177682162975,0,0,0,0,0,0.512483037175893,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321146125482298,1.41696576325585,0.638535436228605,0.205116364240755,2.26864526599546,1.45230230174858,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.945526184657525,0,0.206686796501184,0.824405532520789,0,0,0,0,0,0,0,0,0,0,0,0,0,0.986591603442736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0.118920090777569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.747906392100062,0,0,0,0,0,0,0,0.633492505057185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p4@EMX1 | |short_description=p4@EMX1 | ||
}} | }} |
Latest revision as of 08:52, 18 September 2015
Short description: | p4@EMX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_EMX1_5end |
Coexpression cluster: | C2705_kidney_brain_occipital_duodenum_Neurons_Renal_temporal |
Association with transcript: | 135bp_to_ENST00000258106, NM_004097, uc002sin.1_5end |
EntrezGene: | EMX1 |
HGNC: | 3340 |
UniProt: | Q04741 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
occipital lobe | 5.69e-40 | 5 |
occipital pole | 3.28e-23 | 1 |
pole of cerebral hemisphere | 3.28e-23 | 1 |
neocortex | 4.46e-17 | 20 |
regional part of cerebral cortex | 1.24e-15 | 22 |
cerebral cortex | 6.98e-14 | 25 |
pallium | 6.98e-14 | 25 |
regional part of telencephalon | 5.00e-11 | 32 |
cerebral hemisphere | 5.00e-11 | 32 |
brain grey matter | 2.03e-10 | 34 |
gray matter | 2.03e-10 | 34 |
telencephalon | 2.03e-10 | 34 |
regional part of forebrain | 9.61e-09 | 41 |
forebrain | 9.61e-09 | 41 |
anterior neural tube | 9.61e-09 | 41 |
future forebrain | 9.61e-09 | 41 |
frontal cortex | 1.51e-08 | 3 |
brain | 4.96e-08 | 68 |
future brain | 4.96e-08 | 68 |
regional part of nervous system | 7.16e-07 | 53 |
regional part of brain | 7.16e-07 | 53 |
central nervous system | 8.73e-07 | 81 |