FFCP PHASE1:Hg19::chr3:108015382..108015406,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=11148 | |EntrezGene=11148 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4905 | |HGNC=4905 | ||
|TSSclassifier=strong | |||
|UniProt=C9JY43,C9JY13,B4DKN2,C9J8J7,C9J7D0 | |UniProt=C9JY43,C9JY13,B4DKN2,C9J8J7,C9J7D0 | ||
|association_with_transcript=0bp_to_ENST00000462629,ENST00000463019,ENST00000467562,ENST00000482430,ENST00000491820,uc003dwy.3,uc010hpu.2,uc011bhl.1_5end | |association_with_transcript=0bp_to_ENST00000462629,ENST00000463019,ENST00000467562,ENST00000482430,ENST00000491820,uc003dwy.3,uc010hpu.2,uc011bhl.1_5end | ||
|cluster_id=chr3:108015382..108015406,+ | |||
|coexpression_cluster_id=C25 | |||
|description=CAGE_peak_1_at_HHLA2_5end | |description=CAGE_peak_1_at_HHLA2_5end | ||
|id=chr3:108015382..108015406,+ | |id=chr3:108015382..108015406,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006242;6.97e-08;1!UBERON:0001045;8.24e-08;1!UBERON:0000358;1.31e-07;1 | |||
|ontology_enrichment_disease=DOID:4929!4.65e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:2355;4.82e-08;1!DOID:0060060;1.31e-07;1!DOID:0060061;1.31e-07;1!DOID:8691;1.31e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:2355,4.66e-08,1;DOID:0060060,1.18e-07,1;DOID:0060061,1.18e-07,1;DOID:8691,1.18e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0000160!6.37e-17!27;UBERON:0005409!1.03e-16!35;UBERON:0000059!8.43e-14!11;UBERON:0004907!1.81e-10!5;UBERON:0004921!1.20e-09!129;UBERON:0004185!1.20e-09!129;UBERON:0001155!4.90e-09!9;UBERON:0001007!8.11e-08!155;UBERON:0001555!8.11e-08!155;UBERON:0007026!8.11e-08!155;UBERON:0001052!1.08e-07!4;UBERON:0003127!3.11e-07!2;UBERON:0000341!4.37e-07!2 | |ontology_enrichment_uberon=UBERON:0000160!6.37e-17!27;UBERON:0005409!1.03e-16!35;UBERON:0000059!8.43e-14!11;UBERON:0004907!1.81e-10!5;UBERON:0004921!1.20e-09!129;UBERON:0004185!1.20e-09!129;UBERON:0001155!4.90e-09!9;UBERON:0001007!8.11e-08!155;UBERON:0001555!8.11e-08!155;UBERON:0007026!8.11e-08!155;UBERON:0001052!1.08e-07!4;UBERON:0003127!3.11e-07!2;UBERON:0000341!4.37e-07!2 | ||
|ontology_enrichment_uberon_v019=UBERON:0000160;3.69e-35;17!UBERON:0005409;1.16e-32;22!UBERON:0000059;6.33e-21;11!UBERON:0004921;2.93e-19;33!UBERON:0002108;5.98e-13;4!UBERON:0001155;4.39e-12;9!UBERON:0004907;5.11e-12;5!UBERON:0001154;8.24e-08;1!UBERON:0001153;8.24e-08;1!UBERON:0009854;8.24e-08;1!UBERON:0002171;1.31e-07;1!UBERON:0006518;1.31e-07;1!UBERON:0008949;1.31e-07;1!UBERON:0000101;1.31e-07;1!UBERON:0002167;1.31e-07;1!UBERON:0001555;2.29e-07;54!UBERON:0001052;3.23e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,3.49e-35,17;UBERON:0005409,1.08e-28,25;UBERON:0000059,6.01e-21,11;UBERON:0002108,5.87e-13,4;UBERON:0004921,2.39e-12,118;UBERON:0001155,4.45e-12,9;UBERON:0004907,4.82e-12,5;UBERON:0001007,8.72e-11,145;UBERON:0001555,8.72e-11,145;UBERON:0007026,8.72e-11,145;UBERON:0004119,1.91e-09,160;UBERON:0000925,1.91e-09,160;UBERON:0006595,1.91e-09,160;UBERON:0001154,8.51e-08,1;UBERON:0001153,8.51e-08,1;UBERON:0001045,8.51e-08,1;UBERON:0002171,1.26e-07,1;UBERON:0006518,1.26e-07,1;UBERON:0008949,1.26e-07,1;UBERON:0000101,1.26e-07,1;UBERON:0002167,1.26e-07,1;UBERON:0001052,3.03e-07,4 | |||
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| ||
|short_description=p1@HHLA2 | |short_description=p1@HHLA2 | ||
}} | }} |
Latest revision as of 11:19, 19 September 2015
Short description: | p1@HHLA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HHLA2_5end |
Coexpression cluster: | C25_small_colon_temporal_duodenum_liver_Hepatocyte_gall |
Association with transcript: | 0bp_to_ENST00000462629, ENST00000463019, ENST00000467562, ENST00000482430, ENST00000491820, uc003dwy.3, uc010hpu.2, uc011bhl.1_5end |
EntrezGene: | HHLA2 |
HGNC: | 4905 |
UniProt: | C9JY43C9JY13B4DKN2C9J8J7C9J7D0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestine | 3.49e-35 | 17 |
gastrointestinal system | 1.08e-28 | 25 |
large intestine | 6.01e-21 | 11 |
small intestine | 5.87e-13 | 4 |
subdivision of digestive tract | 2.39e-12 | 118 |
colon | 4.45e-12 | 9 |
lower digestive tract | 4.82e-12 | 5 |
digestive system | 8.72e-11 | 145 |
digestive tract | 8.72e-11 | 145 |
primitive gut | 8.72e-11 | 145 |
endoderm-derived structure | 1.91e-09 | 160 |
endoderm | 1.91e-09 | 160 |
presumptive endoderm | 1.91e-09 | 160 |
vermiform appendix | 8.51e-08 | 1 |
caecum | 8.51e-08 | 1 |
midgut | 8.51e-08 | 1 |
lower lobe of right lung | 1.26e-07 | 1 |
right lung lobe | 1.26e-07 | 1 |
lower lobe of lung | 1.26e-07 | 1 |
lobe of lung | 1.26e-07 | 1 |
right lung | 1.26e-07 | 1 |
rectum | 3.03e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
anemia | 4.66e-08 | 1 |
non-Hodgkin lymphoma | 1.18e-07 | 1 |
cutaneous T cell lymphoma | 1.18e-07 | 1 |
mycosis fungoides | 1.18e-07 | 1 |