FFCP PHASE1:Hg19::chr4:127699583..127699608,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:127699583..127699608,- | |||
|description=CAGE_peak_at_chr4:127699583..127699608,- | |description=CAGE_peak_at_chr4:127699583..127699608,- | ||
|id=chr4:127699583..127699608,- | |id=chr4:127699583..127699608,- | ||
|ontology_enrichment_celltype=CL:0000057!2.86e-16!75;CL:0002620!1.92e-13!23;CL:0000055!1.52e-10!180;CL:0000548!1.38e-09!679;CL:0000004!1.38e-09!679;CL:0000255!1.38e-09!679;CL:0000012!2.40e-09!682;CL:0000144!1.08e-08!625;CL:0002551!1.17e-08!6;CL:0002371!8.80e-08!591;CL:0000063!5.63e-07!578 | |ontology_enrichment_celltype=CL:0000057!2.86e-16!75;CL:0002620!1.92e-13!23;CL:0000055!1.52e-10!180;CL:0000548!1.38e-09!679;CL:0000004!1.38e-09!679;CL:0000255!1.38e-09!679;CL:0000012!2.40e-09!682;CL:0000144!1.08e-08!625;CL:0002551!1.17e-08!6;CL:0002371!8.80e-08!591;CL:0000063!5.63e-07!578 | ||
|ontology_enrichment_celltype_v019=CL:0002551;4.92e-21;6!CL:0002559;7.99e-12;5!CL:0002620;8.53e-11;23!CL:0002561;2.64e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002551,6.26e-21,6;CL:0002559,6.78e-12,5;CL:0002620,1.17e-10,23;CL:0002561,2.70e-08,2;CL:0000057,5.28e-08,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1036!1.18e-07!8 | |ontology_enrichment_disease=DOID:1036!1.18e-07!8 | ||
|ontology_enrichment_disease_v019=DOID:0060072;2.06e-14;4!DOID:1036;9.53e-12;8!DOID:0060084;7.21e-11;3!DOID:127;7.21e-11;3 | |||
|ontology_enrichment_disease_v019_2=DOID:0060072,1.53e-14,4;DOID:1036,6.93e-12,8;DOID:0060084,5.12e-11,3;DOID:127,5.12e-11,3 | |||
|ontology_enrichment_uberon=UBERON:0003102!3.60e-17!95;UBERON:0002097!6.29e-13!40;UBERON:0002199!8.99e-13!45;UBERON:0002416!8.99e-13!45;UBERON:0002067!1.45e-09!9;UBERON:0004016!1.45e-09!9;UBERON:0010083!1.45e-09!9;UBERON:0001828!2.29e-07!8 | |ontology_enrichment_uberon=UBERON:0003102!3.60e-17!95;UBERON:0002097!6.29e-13!40;UBERON:0002199!8.99e-13!45;UBERON:0002416!8.99e-13!45;UBERON:0002067!1.45e-09!9;UBERON:0004016!1.45e-09!9;UBERON:0010083!1.45e-09!9;UBERON:0001828!2.29e-07!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0002067;2.88e-24;9!UBERON:0002073;7.99e-12;5!UBERON:0002097;1.73e-10;41!UBERON:0005933;2.64e-08;2!UBERON:0005942;2.64e-08;2!UBERON:0005932;2.64e-08;2!UBERON:0002199;5.41e-08;46!UBERON:0002416;5.41e-08;46!UBERON:0003102;1.13e-07;50!UBERON:0001828;2.51e-07;8!UBERON:0004923;3.34e-07;55 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002067,2.92e-24,9;UBERON:0004016,2.92e-24,9;UBERON:0010083,2.92e-24,9;UBERON:0002097,1.04e-13,41;UBERON:0002073,6.78e-12,5;UBERON:0005086,6.78e-12,5;UBERON:0002199,7.11e-12,46;UBERON:0002416,7.11e-12,46;UBERON:0003102,1.21e-11,99;UBERON:0005933,2.70e-08,2;UBERON:0005942,2.70e-08,2;UBERON:0005932,2.70e-08,2;UBERON:0000486,3.58e-07,83;UBERON:0001828,3.91e-07,8 | |||
|phase1_expression=0.363356758541113,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34465029290355,0,0,0,0,0,0,0,0.273748850145768,0,0,0,0,0,0,0,0.919421224478927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0.626984899610432,0.258416759169329,0,0.33472061276467,0.402829317109147,0,0,0,0,0.0892997282840798,0.22452937262617,0,0,0,0,0,0,0,0,0.379891534993739,2.91300197789081,0.286836620748814,0,0,0,0,0.622422070799533,0,0,0,0,0.937285727335186,2.18512053781224,1.1409436430889,1.19558944441441,2.3486899728753,2.10434827678571,1.96631129383148,2.04154171254893,0.61417158655884,0.206651562351531,1.18800285728205,0,0,0.718618141816238,1.17835279767846,1.25118519871964,2.49357703935765,0,0,0,0.113432183160021,0.89694817844431,0,1.05965950579781,0.600182192168805,0.103052529238439,1.8034837803194,0.18611685633159,1.0126579934476,0,0.504867548488229,0.460249493211497,0,0.355009592516614,0.503760491138201,0,2.12586938479627,0.818238361772504,1.14721838155602,0,0,0,0,0,0,1.56449532329816,0,2.76269842704961,3.71494342425583,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0.109750285408626,0,0.201057944823262,0.925884451585296,0.977424915930974,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,1.17587489739202,0.425325291727159,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0.102827492703324,0,0,0.224262168690721,0,0.1466765716419,0.129271715757778,0,0,0.26593811658487,0,0,0,0,0,0,0,1.95441710576241,0,0,0.904318131178758,0,0,0,0,0,0,0,0,2.02693829334611,0,1.61154866915906,0.560425719967636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300946099727719,0,0,0,0,1.30325421702124,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0,0,0.160853921143607,1.48418066444991,0.308419387605311,0.532685175939381,0.164254312027618,0,0.581051892299796,0,0.601519410909855,0.0920809889358963,0.114814448164607,0,0.393373244878272,0,0.15403067420883,0.784349769176855,0,0.105551628892876,0,0.170093705276516,0,0,0,0,0.764628819135115,0,0.447749509444357,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0.154048617114644,0,0.551346289938122,0,0,0.0852266274161009,0,1.4875642382488,0.384380134730212,12.7612712494584,0.2023155617111,0,1.5740617341532,0.6970372701606,0,0,0,0.55597265731176,0,0.372158369359667,0,0,0,0,0,0,0.179872457583315,0,0.117812402345686,0,1.58510321173008,0,0,0.243713489631284,0,0.545999645631943,0,0,0,0,0,0,0,0.202910376962704,0,0.281695602532241,0,0,0,2.12856638442359,0,0.987884678879706,0,0,0.0962221127255121,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,0.334330152832435,9.37649284461163,0,0,0,0,0,6.01067007123692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0.156980256395025,0,3.83512623049207,2.54881294613061,8.22325776181629,1.70778359451767,0.158936578980379,0.210998064528027,0,0,0,0,0,0,0,0,0.104421949505455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.687944129886466,0,0,0,0,0,0,0,3.17943378724783,0,0,0.961905843018405,0,0,0,0.458146384663663,0,4.89786313159709,3.23056592470125,0,0,0,0,0,0,0,0,0,3.94331031418972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5840050477911,0,0.575745591958336,0,0,0,1.08599920350743,1.72844298240254,1.95952416065645,0,6.73158670144579,0.170388021785422,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.298509605773748,0.233713309847224,1.66441758450784,1.13641803165053,0.50313580350515,0,0.915360273587694,0.151230923763239,0,0.147855149989634,0.477890301491107,0,0.310525913752519,1.24411862352257,0.53168342911599,1.5652351854352,0,0,0.406870733204662,0.545545977607678,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0.244736704506468,0,0,0,0.176689145945881,0,0.168942440653073,0,0,0.607719912354764,0,0,0,0,0,2.21195617878347,0,0,0,0.344429959321631,0.567515953566836,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0.857440047187092,0,0,0.236387681767936,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,2.24830801388074,1.95990830946063,0,0,0,0.955538938977433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0,3.17605384544123,0.481448200135009,0,0,0,0,0,0,0,0,0,0.432626562123789,0,0,0,0.203977659483963,0,2.84874188558019,0.752122617877125,0,0,0,0,0,0,0,0,0.448527450322454,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0.363356758541113,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34465029290355,0,0,0,0,0,0,0,0.273748850145768,0,0,0,0,0,0,0,0.919421224478927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0.626984899610432,0.258416759169329,0,0.33472061276467,0.402829317109147,0,0,0,0,0.0892997282840798,0.22452937262617,0,0,0,0,0,0,0,0,0.379891534993739,2.91300197789081,0.286836620748814,0,0,0,0,0.622422070799533,0,0,0,0,0.937285727335186,2.18512053781224,1.1409436430889,1.19558944441441,2.3486899728753,2.10434827678571,1.96631129383148,2.04154171254893,0.61417158655884,0.206651562351531,1.18800285728205,0,0,0.718618141816238,1.17835279767846,1.25118519871964,2.49357703935765,0,0,0,0.113432183160021,0.89694817844431,0,1.05965950579781,0.600182192168805,0.103052529238439,1.8034837803194,0.18611685633159,1.0126579934476,0,0.504867548488229,0.460249493211497,0,0.355009592516614,0.503760491138201,0,2.12586938479627,0.818238361772504,1.14721838155602,0,0,0,0,0,0,1.56449532329816,0,2.76269842704961,3.71494342425583,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0.109750285408626,0,0.201057944823262,0.925884451585296,0.977424915930974,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,1.17587489739202,0.425325291727159,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0.102827492703324,0,0,0.224262168690721,0,0.1466765716419,0.129271715757778,0,0,0.26593811658487,0,0,0,0,0,0,0,1.95441710576241,0,0,0.904318131178758,0,0,0,0,0,0,0,0,2.02693829334611,0,1.61154866915906,0.560425719967636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300946099727719,0,0,0,0,1.30325421702124,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0,0,0.160853921143607,1.48418066444991,0.308419387605311,0.532685175939381,0.164254312027618,0,0.581051892299796,0,0.601519410909855,0.0920809889358963,0.114814448164607,0,0.393373244878272,0,0.15403067420883,0.784349769176855,0,0.105551628892876,0,0.170093705276516,0,0,0,0,0.764628819135115,0,0.447749509444357,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0.154048617114644,0,0.551346289938122,0,0,0.0852266274161009,0,1.4875642382488,0.384380134730212,12.7612712494584,0.2023155617111,0,1.5740617341532,0.6970372701606,0,0,0,0.55597265731176,0,0.372158369359667,0,0,0,0,0,0,0.179872457583315,0,0.117812402345686,0,1.58510321173008,0,0,0.243713489631284,0,0.545999645631943,0,0,0,0,0,0,0,0.202910376962704,0,0.281695602532241,0,0,0,2.12856638442359,0,0.987884678879706,0,0,0.0962221127255121,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,0.334330152832435,9.37649284461163,0,0,0,0,0,6.01067007123692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0.156980256395025,0,3.83512623049207,2.54881294613061,8.22325776181629,1.70778359451767,0.158936578980379,0.210998064528027,0,0,0,0,0,0,0,0,0.104421949505455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.687944129886466,0,0,0,0,0,0,0,3.17943378724783,0,0,0.961905843018405,0,0,0,0.458146384663663,0,4.89786313159709,3.23056592470125,0,0,0,0,0,0,0,0,0,3.94331031418972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5840050477911,0,0.575745591958336,0,0,0,1.08599920350743,1.72844298240254,1.95952416065645,0,6.73158670144579,0.170388021785422,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.298509605773748,0.233713309847224,1.66441758450784,1.13641803165053,0.50313580350515,0,0.915360273587694,0.151230923763239,0,0.147855149989634,0.477890301491107,0,0.310525913752519,1.24411862352257,0.53168342911599,1.5652351854352,0,0,0.406870733204662,0.545545977607678,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0.244736704506468,0,0,0,0.176689145945881,0,0.168942440653073,0,0,0.607719912354764,0,0,0,0,0,2.21195617878347,0,0,0,0.344429959321631,0.567515953566836,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0.857440047187092,0,0,0.236387681767936,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,2.24830801388074,1.95990830946063,0,0,0,0.955538938977433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0,3.17605384544123,0.481448200135009,0,0,0,0,0,0,0,0,0,0.432626562123789,0,0,0,0.203977659483963,0,2.84874188558019,0.752122617877125,0,0,0,0,0,0,0,0,0.448527450322454,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr4:127699583..127699608,- | |short_description=p@chr4:127699583..127699608,- | ||
}} | }} |
Latest revision as of 01:28, 30 July 2015
Short description: | p@chr4:127699583..127699608, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:127699583..127699608, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast of dermis | 6.26e-21 | 6 |
hair follicle cell | 6.78e-12 | 5 |
skin fibroblast | 1.17e-10 | 23 |
outer root sheath cell | 2.70e-08 | 2 |
fibroblast | 5.28e-08 | 76 |
Ontology term | p-value | n |
---|---|---|
dermis | 2.92e-24 | 9 |
dermatome | 2.92e-24 | 9 |
future dermis | 2.92e-24 | 9 |
skin of body | 1.04e-13 | 41 |
hair follicle | 6.78e-12 | 5 |
hair follicle placode | 6.78e-12 | 5 |
integument | 7.11e-12 | 46 |
integumental system | 7.11e-12 | 46 |
surface structure | 1.21e-11 | 99 |
hair root sheath | 2.70e-08 | 2 |
hair outer root sheath | 2.70e-08 | 2 |
bulb of hair follicle | 2.70e-08 | 2 |
multilaminar epithelium | 3.58e-07 | 83 |
gingiva | 3.91e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
benign neoplasm | 1.53e-14 | 4 |
chronic leukemia | 6.93e-12 | 8 |
cell type benign neoplasm | 5.12e-11 | 3 |
leiomyoma | 5.12e-11 | 3 |