FFCP PHASE1:Hg19::chr4:165798135..165798147,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=100506013 | |EntrezGene=100506013 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-8bp_to_ENST00000507152,NR_038825_5end | |association_with_transcript=-8bp_to_ENST00000507152,NR_038825_5end | ||
|cluster_id=chr4:165798135..165798147,+ | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_1_at_LOC100506013_5end | |description=CAGE_peak_1_at_LOC100506013_5end | ||
|id=chr4:165798135..165798147,+ | |id=chr4:165798135..165798147,+ | ||
|ontology_enrichment_celltype=CL:0002322!7.56e-21!5;CL:0000540!9.27e-07!6;CL:0000031!9.27e-07!6;CL:0000404!9.27e-07!6 | |ontology_enrichment_celltype=CL:0002322!7.56e-21!5;CL:0000540!9.27e-07!6;CL:0000031!9.27e-07!6;CL:0000404!9.27e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0002322;1.13e-46;5!CL:0002321;1.83e-29;15!CL:0000540;1.29e-14;6!CL:0000404;1.29e-14;6!CL:0000039;3.89e-12;7!CL:0000586;3.89e-12;7!CL:0000148;5.38e-09;10!CL:0000333;4.14e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.18e-46,5;CL:0000540,1.26e-14,6;CL:0000031,1.26e-14,6;CL:0000404,1.26e-14,6;CL:0000039,3.54e-12,7;CL:0000586,3.54e-12,7;CL:0000047,4.18e-11,8;CL:0000148,5.38e-09,10;CL:0000541,5.38e-09,10;CL:0000133,1.09e-08,59;CL:0000221,5.54e-07,72 | |||
|ontology_enrichment_development_v019=CL:0000031;1.29e-14;6!UBERON:0009117;1.58e-14;10!UBERON:0005564;1.58e-14;10 | |||
|ontology_enrichment_disease=DOID:3095!5.33e-16!22;DOID:2994!5.33e-16!22;DOID:171!1.45e-09!10;DOID:17!2.49e-07!5;DOID:450!2.49e-07!5;DOID:66!2.49e-07!5;DOID:423!2.49e-07!5;DOID:0080000!2.49e-07!5;DOID:11722!2.49e-07!5 | |ontology_enrichment_disease=DOID:3095!5.33e-16!22;DOID:2994!5.33e-16!22;DOID:171!1.45e-09!10;DOID:17!2.49e-07!5;DOID:450!2.49e-07!5;DOID:66!2.49e-07!5;DOID:423!2.49e-07!5;DOID:0080000!2.49e-07!5;DOID:11722!2.49e-07!5 | ||
|ontology_enrichment_disease_v019=DOID:3095;5.07e-25;22!DOID:2994;5.07e-25;22!DOID:178;3.78e-10;1!DOID:326;3.78e-10;1!DOID:3978;3.78e-10;1!DOID:3394;3.78e-10;1!DOID:5844;3.78e-10;1!DOID:171;1.23e-08;10!DOID:169;6.78e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,4.76e-25,22;DOID:2994,4.76e-25,22;DOID:178,3.29e-10,1;DOID:326,3.29e-10,1;DOID:3978,3.29e-10,1;DOID:3394,3.29e-10,1;DOID:5844,3.29e-10,1;DOID:171,1.23e-08,10;DOID:169,6.68e-07,6 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;1.09e-10;8!UBERON:0000922;3.67e-09;49!UBERON:0000013;4.14e-08;5!UBERON:0002410;4.14e-08;5!UBERON:0003135;6.55e-08;11!UBERON:0000991;5.17e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.01e-10,8;UBERON:0000013,4.07e-08,5;UBERON:0002410,4.07e-08,5;UBERON:0003135,6.17e-08,11;UBERON:0000991,5.01e-07,21;UBERON:0009196,5.01e-07,21;UBERON:0009117,5.01e-07,21;UBERON:0005564,5.01e-07,21 | |||
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| ||
|short_description=p1@LOC100506013 | |short_description=p1@LOC100506013 | ||
}} | }} |
Latest revision as of 13:53, 16 September 2015
Short description: | p1@LOC100506013 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LOC100506013_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | -8bp_to_ENST00000507152, NR_038825_5end |
EntrezGene: | LOC100506013 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.18e-46 | 5 |
neuron | 1.26e-14 | 6 |
neuroblast | 1.26e-14 | 6 |
electrically signaling cell | 1.26e-14 | 6 |
germ line cell | 3.54e-12 | 7 |
germ cell | 3.54e-12 | 7 |
neuronal stem cell | 4.18e-11 | 8 |
melanocyte | 5.38e-09 | 10 |
melanoblast | 5.38e-09 | 10 |
neurectodermal cell | 1.09e-08 | 59 |
ectodermal cell | 5.54e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
testis | 1.01e-10 | 8 |
sympathetic nervous system | 4.07e-08 | 5 |
autonomic nervous system | 4.07e-08 | 5 |
male reproductive organ | 6.17e-08 | 11 |
gonad | 5.01e-07 | 21 |
indifferent external genitalia | 5.01e-07 | 21 |
indifferent gonad | 5.01e-07 | 21 |
gonad primordium | 5.01e-07 | 21 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 4.76e-25 | 22 |
germ cell cancer | 4.76e-25 | 22 |
vascular disease | 3.29e-10 | 1 |
ischemia | 3.29e-10 | 1 |
extrinsic cardiomyopathy | 3.29e-10 | 1 |
myocardial ischemia | 3.29e-10 | 1 |
myocardial infarction | 3.29e-10 | 1 |
neuroectodermal tumor | 1.23e-08 | 10 |
neuroendocrine tumor | 6.68e-07 | 6 |