FFCP PHASE1:Hg19::chr16:1823114..1823165,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr16:1823114..1823165,-
|short_description=p1@MRPS34
|description=CAGE_peak_1_at_MRPS34_5end
|association_with_transcript=0bp_to_ENST00000177742,ENST0000039737...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=65993 | |EntrezGene=65993 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16618 | |HGNC=16618 | ||
|TSSclassifier=strong | |||
|UniProt=C9JJ19,P82930,A4UCR9 | |UniProt=C9JJ19,P82930,A4UCR9 | ||
|association_with_transcript=0bp_to_ENST00000177742,ENST00000397375,NM_023936,uc002cmo.2,uc002cmp.1_5end | |||
|cluster_id=chr16:1823114..1823165,- | |||
|coexpression_cluster_id=C534 | |||
|description=CAGE_peak_1_at_MRPS34_5end | |||
|id=chr16:1823114..1823165,- | |||
|ontology_enrichment_celltype=CL:0000066!7.11e-24!254;CL:0000548!1.23e-19!679;CL:0000004!1.23e-19!679;CL:0000255!1.23e-19!679;CL:0000012!4.68e-19!682;CL:0002321!1.80e-18!248;CL:0000220!8.07e-18!246;CL:0000003!3.67e-11!722;CL:0000222!5.39e-09!119;CL:0000144!9.18e-09!625;CL:0000076!5.55e-08!62;CL:0000055!6.60e-08!180;CL:0000333!1.07e-07!41;CL:0000221!2.82e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:1000497;3.36e-07;17!CL:0002518;3.36e-07;17!CL:1000449;3.75e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.28e-24,253;CL:0002321,2.06e-18,250;CL:0000222,6.53e-09,121;CL:0000076,7.83e-08,63;CL:0000333,1.07e-07,41;CL:1000497,3.34e-07,17;CL:0002518,3.34e-07,17;CL:0000221,3.71e-07,72;CL:1000449,3.76e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!4.59e-21!239;DOID:162!8.31e-21!235;DOID:0050687!1.48e-11!143;DOID:305!1.64e-09!106;DOID:0050686!4.46e-09!137;DOID:2531!2.89e-07!51;DOID:0060083!2.89e-07!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,4.59e-21,239;DOID:162,8.31e-21,235;DOID:0050687,1.48e-11,143;DOID:305,1.64e-09,106;DOID:0050686,4.46e-09,137;DOID:2531,2.89e-07,51;DOID:0060083,2.89e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0003104!1.70e-09!238;UBERON:0009142!1.70e-09!238;UBERON:0000072!9.47e-08!46;UBERON:0002100!1.49e-07!216;UBERON:0008947!1.61e-07!38;UBERON:0003258!1.61e-07!38;UBERON:0009569!2.97e-07!113;UBERON:0001737!5.09e-07!9;UBERON:0003914!5.49e-07!118 | |||
|ontology_enrichment_uberon_v019=UBERON:0000072;1.07e-08;37!UBERON:0006555;3.75e-07;15!UBERON:0004819;3.75e-07;15!UBERON:0001285;3.75e-07;15!UBERON:0007684;3.75e-07;15!UBERON:0001737;5.08e-07;9!UBERON:0001557;5.08e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,8.11e-09,199;UBERON:0008947,1.61e-07,38;UBERON:0003258,1.61e-07,38;UBERON:0009569,2.44e-07,112;UBERON:0000072,2.49e-07,47;UBERON:0003914,3.24e-07,117;UBERON:0004211,3.76e-07,15;UBERON:0009773,3.76e-07,15;UBERON:0001231,3.76e-07,15;UBERON:0001285,3.76e-07,15;UBERON:0007684,3.76e-07,15;UBERON:0004208,3.76e-07,15;UBERON:0001737,5.09e-07,9;UBERON:0000490,5.59e-07,148 | |||
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| ||
|short_description=p1@MRPS34 | |||
}} | }} |
Latest revision as of 23:05, 24 September 2015
Short description: | p1@MRPS34 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MRPS34_5end |
Coexpression cluster: | C534_Mesenchymal_Alveolar_Renal_Placental_Fibroblast_Smooth_Tracheal |
Association with transcript: | 0bp_to_ENST00000177742, ENST00000397375, NM_023936, uc002cmo.2, uc002cmp.1_5end |
EntrezGene: | MRPS34 |
HGNC: | 16618 |
UniProt: | C9JJ19P82930A4UCR9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.28e-24 | 253 |
embryonic cell | 2.06e-18 | 250 |
mesodermal cell | 6.53e-09 | 121 |
squamous epithelial cell | 7.83e-08 | 63 |
migratory neural crest cell | 1.07e-07 | 41 |
kidney cell | 3.34e-07 | 17 |
kidney epithelial cell | 3.34e-07 | 17 |
ectodermal cell | 3.71e-07 | 72 |
epithelial cell of nephron | 3.76e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
trunk | 8.11e-09 | 199 |
respiratory primordium | 1.61e-07 | 38 |
endoderm of foregut | 1.61e-07 | 38 |
subdivision of trunk | 2.44e-07 | 112 |
segment of respiratory tract | 2.49e-07 | 47 |
epithelial tube | 3.24e-07 | 117 |
nephron epithelium | 3.76e-07 | 15 |
renal tubule | 3.76e-07 | 15 |
nephron tubule | 3.76e-07 | 15 |
nephron | 3.76e-07 | 15 |
uriniferous tubule | 3.76e-07 | 15 |
nephrogenic mesenchyme | 3.76e-07 | 15 |
larynx | 5.09e-07 | 9 |
unilaminar epithelium | 5.59e-07 | 148 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 4.59e-21 | 239 |
cancer | 8.31e-21 | 235 |
cell type cancer | 1.48e-11 | 143 |
carcinoma | 1.64e-09 | 106 |
organ system cancer | 4.46e-09 | 137 |
hematologic cancer | 2.89e-07 | 51 |
immune system cancer | 2.89e-07 | 51 |