FFCP PHASE1:Hg19::chr16:52028503..52028515,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr16:52028503..52028515,-
|short_description=p@chr16:52028503..52028515,-
|description=CAGE_peak_at_chr16:52028503..52028515,-
|association_with_transcript=NA
...") |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr16:52028503..52028515,- | |||
|coexpression_cluster_id=C617 | |||
|description=CAGE_peak_at_chr16:52028503..52028515,- | |||
|id=chr16:52028503..52028515,- | |||
|ontology_enrichment_celltype=CL:0000313!3.06e-08!1 | |||
|ontology_enrichment_celltype_v019=CL:0000082;2.41e-09;19!CL:0002188;2.74e-09;5!CL:1000746;5.38e-07;7!CL:1000612;5.38e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000082,2.36e-09,19;CL:0002188,2.74e-09,5;CL:1000746,5.38e-07,7;CL:1000612,5.38e-07,7 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!2.44e-12!106;DOID:3111!5.59e-09!1;DOID:3603!5.59e-09!1;DOID:0050687!2.06e-08!143;DOID:2152!3.06e-08!1 | |||
|ontology_enrichment_disease_v019=DOID:3111;6.62e-41;1!DOID:3603;6.62e-41;1!DOID:1324;1.46e-11;15!DOID:5409;3.60e-11;4!DOID:0050615;6.62e-11;16!DOID:1325;6.21e-07;7!DOID:3904;6.21e-07;7 | |||
|ontology_enrichment_disease_v019_2=DOID:3111,6.62e-41,1;DOID:3603,6.62e-41,1;DOID:1324,1.42e-11,15;DOID:5409,3.42e-11,4;DOID:0050615,6.45e-11,16;DOID:1325,6.04e-07,7;DOID:3904,6.04e-07,7 | |||
|ontology_enrichment_uberon=UBERON:0002048!1.72e-15!22;UBERON:0000117!1.72e-15!22;UBERON:0000171!1.72e-15!22;UBERON:0000170!1.72e-15!22;UBERON:0005597!1.72e-15!22;UBERON:0000118!1.72e-15!22;UBERON:0004921!1.13e-12!129;UBERON:0004185!1.13e-12!129;UBERON:0005178!1.27e-12!34;UBERON:0002224!1.27e-12!34;UBERON:0005181!3.13e-12!35;UBERON:0000065!6.83e-12!53;UBERON:0001041!9.86e-12!98;UBERON:0000466!1.13e-11!126;UBERON:0004119!1.46e-11!169;UBERON:0000925!1.46e-11!169;UBERON:0006595!1.46e-11!169;UBERON:0005153!1.55e-11!37;UBERON:0001007!1.96e-11!155;UBERON:0001555!1.96e-11!155;UBERON:0007026!1.96e-11!155;UBERON:0008947!3.54e-11!38;UBERON:0003258!3.54e-11!38;UBERON:0000464!4.79e-11!104;UBERON:0005177!1.19e-10!107;UBERON:0000915!5.85e-10!52;UBERON:0002294!7.97e-10!7;UBERON:0001173!7.97e-10!7;UBERON:0004912!7.97e-10!7;UBERON:0000077!1.44e-09!130;UBERON:0002171!8.15e-09!1;UBERON:0006518!8.15e-09!1;UBERON:0008949!8.15e-09!1;UBERON:0000101!8.15e-09!1;UBERON:0002167!8.15e-09!1;UBERON:0005911!9.76e-09!82;UBERON:0009569!1.92e-08!113;UBERON:0001004!2.56e-08!72;UBERON:0004911!3.06e-08!1;UBERON:0002394!3.54e-08!4;UBERON:0003928!3.54e-08!4;UBERON:0002372!4.07e-08!1;UBERON:0001961!4.07e-08!1;UBERON:0001744!4.07e-08!1;UBERON:0001735!4.07e-08!1;UBERON:0005157!4.65e-08!51;UBERON:0001048!5.75e-08!168 | |||
|ontology_enrichment_uberon_v019=UBERON:0004802;2.41e-09;19!UBERON:0000115;2.41e-09;19!UBERON:0002048;3.32e-08;22!UBERON:0004807;3.32e-08;22!UBERON:0000117;3.32e-08;22!UBERON:0000171;3.32e-08;22!UBERON:0000170;3.32e-08;22!UBERON:0000074;5.38e-07;7!UBERON:0001229;5.38e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004802,2.36e-09,19;UBERON:0000115,2.36e-09,19;UBERON:0002048,3.27e-08,22;UBERON:0000117,3.27e-08,22;UBERON:0000171,3.27e-08,22;UBERON:0000170,3.27e-08,22;UBERON:0005597,3.27e-08,22;UBERON:0000118,3.27e-08,22;UBERON:0003886,2.08e-07,54;UBERON:0010532,5.38e-07,7;UBERON:0000074,5.38e-07,7;UBERON:0001229,5.38e-07,7;UBERON:0001230,5.38e-07,7;UBERON:0003220,5.38e-07,7;UBERON:0005749,5.38e-07,7;UBERON:0004199,5.38e-07,7;UBERON:0004209,5.38e-07,7;UBERON:0004198,5.38e-07,7;UBERON:0005177,6.51e-07,101 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,5.58240934377942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251932747854276,0,0,0,0.179736702294654,0.716084698702437,0,0,0,0,0,0,0,0,0.262379999988587,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209818352539992,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.533937062838473,0.157204305099666,0.828478110694391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.8067789789178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56302802246618,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0.098150233615243,0,0,0,0,0,0,0,0,0,0,1.66059127923341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.64796510074255,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0.215166616178029,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,5.58240934377942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251932747854276,0,0,0,0.179736702294654,0.716084698702437,0,0,0,0,0,0,0,0,0.262379999988587,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209818352539992,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.533937062838473,0.157204305099666,0.828478110694391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.8067789789178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56302802246618,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0.098150233615243,0,0,0,0,0,0,0,0,0,0,1.66059127923341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.64796510074255,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0.215166616178029,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr16:52028503..52028515,- | |||
}} | }} |
Latest revision as of 09:43, 25 July 2015
Short description: | p@chr16:52028503..52028515, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:52028503..52028515, - |
Coexpression cluster: | C617_mucinous_gall_signet_bile_maxillary_keratoacanthoma_Alveolar |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of lung | 2.36e-09 | 19 |
glomerular endothelial cell | 2.74e-09 | 5 |
glomerular cell | 5.38e-07 | 7 |
kidney corpuscule cell | 5.38e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
respiratory tract epithelium | 2.36e-09 | 19 |
lung epithelium | 2.36e-09 | 19 |
lung | 3.27e-08 | 22 |
respiratory tube | 3.27e-08 | 22 |
respiration organ | 3.27e-08 | 22 |
pair of lungs | 3.27e-08 | 22 |
lung primordium | 3.27e-08 | 22 |
lung bud | 3.27e-08 | 22 |
body cavity precursor | 2.08e-07 | 54 |
primitive nephron | 5.38e-07 | 7 |
renal glomerulus | 5.38e-07 | 7 |
renal corpuscle | 5.38e-07 | 7 |
glomerular capsule | 5.38e-07 | 7 |
metanephric mesenchyme | 5.38e-07 | 7 |
glomerular tuft | 5.38e-07 | 7 |
S-shaped body | 5.38e-07 | 7 |
renal vesicle | 5.38e-07 | 7 |
comma-shaped body | 5.38e-07 | 7 |
trunk region element | 6.51e-07 | 101 |
Ontology term | p-value | n |
---|---|---|
cystadenocarcinoma | 6.62e-41 | 1 |
mucinous cystadenocarcinoma | 6.62e-41 | 1 |
lung cancer | 1.42e-11 | 15 |
lung small cell carcinoma | 3.42e-11 | 4 |
respiratory system cancer | 6.45e-11 | 16 |
bronchus cancer | 6.04e-07 | 7 |
bronchogenic carcinoma | 6.04e-07 | 7 |