FFCP PHASE1:Hg19::chr6:30890456..30890482,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57176 | |EntrezGene=57176 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21642 | |HGNC=21642 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=96bp_to_ENST00000477052_5end | |association_with_transcript=96bp_to_ENST00000477052_5end | ||
|cluster_id=chr6:30890456..30890482,+ | |||
|coexpression_cluster_id=C1044 | |||
|description=CAGE_peak_11_at_VARS2_5end | |description=CAGE_peak_11_at_VARS2_5end | ||
|id=chr6:30890456..30890482,+ | |id=chr6:30890456..30890482,+ | ||
|ontology_enrichment_celltype=CL:0000239!8.47e-21!3;CL:1000615!8.47e-21!3;CL:0002306!8.47e-21!3;CL:1000449!1.11e-14!16;CL:0002536!2.16e-14!2;CL:1000507!6.77e-14!12;CL:1000494!6.77e-14!12;CL:1000497!5.46e-13!18;CL:0002518!5.46e-13!18;CL:0002681!7.84e-13!13;CL:0002584!7.84e-13!13;CL:0000066!5.44e-08!254;CL:0002327!1.65e-07!4 | |ontology_enrichment_celltype=CL:0000239!8.47e-21!3;CL:1000615!8.47e-21!3;CL:0002306!8.47e-21!3;CL:1000449!1.11e-14!16;CL:0002536!2.16e-14!2;CL:1000507!6.77e-14!12;CL:1000494!6.77e-14!12;CL:1000497!5.46e-13!18;CL:0002518!5.46e-13!18;CL:0002681!7.84e-13!13;CL:0002584!7.84e-13!13;CL:0000066!5.44e-08!254;CL:0002327!1.65e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0000239;6.91e-39;3!CL:1000615;6.91e-39;3!CL:0002306;6.91e-39;3!CL:0002681;4.95e-38;12!CL:0002584;4.95e-38;12!CL:1000449;1.42e-30;15!CL:1000497;4.63e-27;17!CL:0002518;4.63e-27;17!CL:1000507;3.30e-26;10!CL:1000494;3.30e-26;10!CL:0002537;1.28e-23;5!CL:0002536;2.37e-15;2!CL:0000349;4.14e-14;19!CL:0002188;6.39e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,6.91e-39,3;CL:1000615,6.91e-39,3;CL:0002306,6.91e-39,3;CL:0002681,4.50e-38,12;CL:0002584,4.50e-38,12;CL:1000449,1.31e-30,15;CL:1000497,4.33e-27,17;CL:0002518,4.33e-27,17;CL:1000507,3.03e-26,10;CL:1000494,3.03e-26,10;CL:0002537,1.28e-23,5;CL:0002536,2.74e-15,2;CL:0000349,4.33e-14,19;CL:0002188,6.39e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0006853;6.91e-39;3!UBERON:0007685;6.91e-39;3!UBERON:0004134;6.91e-39;3!UBERON:0001225;4.95e-38;12!UBERON:0008987;4.95e-38;12!UBERON:0000305;8.05e-37;7!UBERON:0001851;1.42e-30;15!UBERON:0006555;1.42e-30;15!UBERON:0000353;1.42e-30;15!UBERON:0004819;1.42e-30;15!UBERON:0001285;1.42e-30;15!UBERON:0007684;1.42e-30;15!UBERON:0004211;3.30e-26;10!UBERON:0009773;3.30e-26;10!UBERON:0001231;3.30e-26;10!UBERON:0004810;3.30e-26;10!UBERON:0005631;4.66e-26;10!UBERON:0000158;4.66e-26;10!UBERON:0002113;2.33e-19;24!UBERON:0011143;2.33e-19;24!UBERON:0000489;3.99e-16;29!UBERON:0006554;1.32e-15;30!UBERON:0001008;1.32e-15;30!UBERON:0000478;2.52e-11;24 | |||
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|short_description=p11@VARS2 | |short_description=p11@VARS2 | ||
}} | }} |
Latest revision as of 19:27, 17 September 2015
Short description: | p11@VARS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_VARS2_5end |
Coexpression cluster: | C1044_Renal_amniotic_Mammary_chorionic_bile_prostate_Amniotic |
Association with transcript: | 96bp_to_ENST00000477052_5end |
EntrezGene: | VARS2 |
HGNC: | 21642 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 6.91e-39 | 3 |
kidney cortex tubule cell | 6.91e-39 | 3 |
epithelial cell of proximal tubule | 6.91e-39 | 3 |
kidney cortical cell | 4.50e-38 | 12 |
renal cortical epithelial cell | 4.50e-38 | 12 |
epithelial cell of nephron | 1.31e-30 | 15 |
kidney cell | 4.33e-27 | 17 |
kidney epithelial cell | 4.33e-27 | 17 |
kidney tubule cell | 3.03e-26 | 10 |
nephron tubule epithelial cell | 3.03e-26 | 10 |
amnion mesenchymal stem cell | 1.28e-23 | 5 |
amniotic epithelial cell | 2.74e-15 | 2 |
extraembryonic cell | 4.33e-14 | 19 |
glomerular endothelial cell | 6.39e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
renal cortex tubule | 6.91e-39 | 3 |
region of nephron tubule | 6.91e-39 | 3 |
proximal tubule | 6.91e-39 | 3 |
cortex of kidney | 4.50e-38 | 12 |
renal parenchyma | 4.50e-38 | 12 |
amnion | 9.10e-37 | 7 |
somatic layer of lateral plate mesoderm | 2.71e-32 | 8 |
cortex | 1.31e-30 | 15 |
nephron epithelium | 1.31e-30 | 15 |
renal tubule | 1.31e-30 | 15 |
parenchyma | 1.31e-30 | 15 |
nephron tubule | 1.31e-30 | 15 |
nephron | 1.31e-30 | 15 |
uriniferous tubule | 1.31e-30 | 15 |
nephrogenic mesenchyme | 1.31e-30 | 15 |
excretory tube | 9.70e-29 | 16 |
kidney epithelium | 9.70e-29 | 16 |
nephron tubule epithelium | 3.03e-26 | 10 |
extraembryonic membrane | 7.78e-19 | 14 |
membranous layer | 7.78e-19 | 14 |
kidney | 6.16e-18 | 26 |
kidney mesenchyme | 6.16e-18 | 26 |
upper urinary tract | 6.16e-18 | 26 |
kidney rudiment | 6.16e-18 | 26 |
kidney field | 6.16e-18 | 26 |
cavitated compound organ | 3.88e-15 | 31 |
extraembryonic structure | 2.61e-11 | 24 |
urinary system structure | 3.69e-10 | 47 |
renal system | 5.88e-10 | 48 |
abdomen element | 6.69e-09 | 54 |
abdominal segment element | 6.69e-09 | 54 |
abdominal segment of trunk | 4.71e-08 | 60 |
abdomen | 4.71e-08 | 60 |
compound organ | 3.74e-07 | 68 |