FFCP PHASE1:Hg19::chr6:33749073..33749084,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=221496 | |EntrezGene=221496 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21244 | |HGNC=21244 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=239bp_to_ENST00000513832_5end | |association_with_transcript=239bp_to_ENST00000513832_5end | ||
|cluster_id=chr6:33749073..33749084,- | |||
|coexpression_cluster_id=C139 | |||
|description=CAGE_peak_6_at_LEMD2_5end | |description=CAGE_peak_6_at_LEMD2_5end | ||
|id=chr6:33749073..33749084,- | |id=chr6:33749073..33749084,- | ||
|ontology_enrichment_celltype=CL:0002322!1.92e-09!5;CL:0005020!2.25e-08!6;CL:0002138!2.25e-08!6;CL:0005022!2.25e-08!6;CL:0000115!3.63e-08!35;CL:0000064!1.06e-07!3;CL:0005012!1.06e-07!3;CL:0000067!1.06e-07!3;CL:0002304!1.06e-07!3;CL:0002139!4.00e-07!24;CL:0000066!5.19e-07!254 | |ontology_enrichment_celltype=CL:0002322!1.92e-09!5;CL:0005020!2.25e-08!6;CL:0002138!2.25e-08!6;CL:0005022!2.25e-08!6;CL:0000115!3.63e-08!35;CL:0000064!1.06e-07!3;CL:0005012!1.06e-07!3;CL:0000067!1.06e-07!3;CL:0002304!1.06e-07!3;CL:0002139!4.00e-07!24;CL:0000066!5.19e-07!254 | ||
|ontology_enrichment_celltype_v019=CL:0000306;1.13e-13;4!CL:0002222;1.13e-13;4!CL:0002224;1.13e-13;4!CL:0000128;1.89e-08;7!CL:0000126;1.89e-08;7!CL:0000127;1.89e-08;7!CL:0000039;2.18e-08;7!CL:0000586;2.18e-08;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000306,1.13e-13,4;CL:0002222,1.13e-13,4;CL:0002224,1.13e-13,4;CL:0000128,1.89e-08,7;CL:0000126,1.89e-08,7;CL:0000127,1.89e-08,7;CL:0002453,1.89e-08,7;CL:0000039,2.03e-08,7;CL:0000586,2.03e-08,7 | |||
|ontology_enrichment_development_v019=UBERON:0009117;9.44e-21;10!UBERON:0005564;9.44e-21;10 | |||
|ontology_enrichment_disease=DOID:0050619!9.30e-07!1;DOID:1357!9.30e-07!1 | |ontology_enrichment_disease=DOID:0050619!9.30e-07!1;DOID:1357!9.30e-07!1 | ||
|ontology_enrichment_disease_v019=DOID:3095;4.74e-10;22!DOID:2994;4.74e-10;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,4.74e-10,22;DOID:2994,4.74e-10,22 | |||
|ontology_enrichment_uberon=UBERON:0000488!4.32e-12!4;UBERON:0007625!1.25e-11!11;UBERON:0001801!4.46e-09!14;UBERON:0002203!3.27e-08!6;UBERON:0001768!3.27e-08!6;UBERON:0001778!1.06e-07!3;UBERON:0001775!1.06e-07!3;UBERON:0001764!9.30e-07!1;UBERON:0001825!9.30e-07!1 | |ontology_enrichment_uberon=UBERON:0000488!4.32e-12!4;UBERON:0007625!1.25e-11!11;UBERON:0001801!4.46e-09!14;UBERON:0002203!3.27e-08!6;UBERON:0001768!3.27e-08!6;UBERON:0001778!1.06e-07!3;UBERON:0001775!1.06e-07!3;UBERON:0001764!9.30e-07!1;UBERON:0001825!9.30e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0010077;1.13e-13;4!UBERON:0005389;1.13e-13;4!UBERON:0000484;1.13e-13;4!UBERON:0000965;1.13e-13;4!UBERON:0001803;1.13e-13;4!UBERON:0000991;1.77e-10;21!UBERON:0000473;1.69e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010077,1.13e-13,4;UBERON:0005389,1.13e-13,4;UBERON:0000484,1.13e-13,4;UBERON:0002546,1.13e-13,4;UBERON:0000965,1.13e-13,4;UBERON:0001803,1.13e-13,4;UBERON:0003073,1.13e-13,4;UBERON:0005426,1.13e-13,4;UBERON:0000991,1.77e-10,21;UBERON:0009196,1.77e-10,21;UBERON:0009117,1.77e-10,21;UBERON:0005564,1.77e-10,21;UBERON:0004176,4.74e-10,22;UBERON:0000473,1.59e-07,8;UBERON:0000076,1.69e-07,8 | |||
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|short_description=p6@LEMD2 | |short_description=p6@LEMD2 | ||
}} | }} |
Latest revision as of 08:11, 18 September 2015
Short description: | p6@LEMD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_LEMD2_5end |
Coexpression cluster: | C139_astrocytoma_skin_salivary_gall_serous_Mallassezderived_renal |
Association with transcript: | 239bp_to_ENST00000513832_5end |
EntrezGene: | LEMD2 |
HGNC: | 21244 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
crystallin accumulating cell | 1.13e-13 | 4 |
vertebrate lens cell | 1.13e-13 | 4 |
lens epithelial cell | 1.13e-13 | 4 |
oligodendrocyte | 1.89e-08 | 7 |
macroglial cell | 1.89e-08 | 7 |
astrocyte | 1.89e-08 | 7 |
oligodendrocyte precursor cell | 1.89e-08 | 7 |
germ line cell | 2.03e-08 | 7 |
germ cell | 2.03e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
cuboidal epithelium | 1.13e-13 | 4 |
transparent eye structure | 1.13e-13 | 4 |
simple cuboidal epithelium | 1.13e-13 | 4 |
cranial placode | 1.13e-13 | 4 |
lens of camera-type eye | 1.13e-13 | 4 |
epithelium of lens | 1.13e-13 | 4 |
lens placode | 1.13e-13 | 4 |
lens vesicle | 1.13e-13 | 4 |
gonad | 1.77e-10 | 21 |
indifferent external genitalia | 1.77e-10 | 21 |
indifferent gonad | 1.77e-10 | 21 |
gonad primordium | 1.77e-10 | 21 |
external genitalia | 4.74e-10 | 22 |
testis | 1.59e-07 | 8 |
external ectoderm | 1.69e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 4.74e-10 | 22 |
germ cell cancer | 4.74e-10 | 22 |