FFCP PHASE1:Hg19::chr19:55405124..55405130,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:55405124..55405130,+ | |||
|coexpression_cluster_id=C196 | |||
|description=CAGE_peak_at_chr19:55405124..55405130,+ | |description=CAGE_peak_at_chr19:55405124..55405130,+ | ||
|id=chr19:55405124..55405130,+ | |id=chr19:55405124..55405130,+ | ||
|ontology_enrichment_celltype=CL:0000039!1.30e-48!7;CL:0000586!1.30e-48!7;CL:0002322!2.70e-47!5;CL:0000540!3.62e-15!6;CL:0000031!3.62e-15!6;CL:0000404!3.62e-15!6;CL:0000047!1.62e-11!8;CL:0000148!3.50e-09!10;CL:0000541!3.50e-09!10 | |ontology_enrichment_celltype=CL:0000039!1.30e-48!7;CL:0000586!1.30e-48!7;CL:0002322!2.70e-47!5;CL:0000540!3.62e-15!6;CL:0000031!3.62e-15!6;CL:0000404!3.62e-15!6;CL:0000047!1.62e-11!8;CL:0000148!3.50e-09!10;CL:0000541!3.50e-09!10 | ||
|ontology_enrichment_celltype_v019=CL:0000039;2.04e-41;7!CL:0000586;2.04e-41;7!CL:0000540;1.47e-27;6!CL:0000404;1.47e-27;6!CL:0002322;2.90e-15;5!CL:0000148;4.18e-08;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,2.04e-41,7;CL:0000586,2.04e-41,7;CL:0000540,1.47e-27,6;CL:0000031,1.47e-27,6;CL:0000404,1.47e-27,6;CL:0000047,7.25e-21,8;CL:0002322,2.90e-15,5;CL:0000148,4.19e-08,10;CL:0000541,4.19e-08,10;CL:0000133,1.97e-07,59 | |||
|ontology_enrichment_development_v019=CL:0000031;1.47e-27;6!UBERON:0009117;5.71e-17;10!UBERON:0005564;5.71e-17;10 | |||
|ontology_enrichment_disease=DOID:3095!2.95e-15!22;DOID:2994!2.95e-15!22 | |ontology_enrichment_disease=DOID:3095!2.95e-15!22;DOID:2994!2.95e-15!22 | ||
|ontology_enrichment_disease_v019=DOID:3095;1.69e-13;22!DOID:2994;1.69e-13;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.69e-13,22;DOID:2994,1.69e-13,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!1.26e-19!8;UBERON:0003135!2.41e-14!11;UBERON:0001052!3.14e-10!4;UBERON:0004907!2.33e-08!5;UBERON:0000991!1.35e-07!21;UBERON:0009196!1.35e-07!21;UBERON:0009117!1.35e-07!21;UBERON:0005564!1.35e-07!21;UBERON:0004176!2.96e-07!22;UBERON:0003101!2.96e-07!22;UBERON:0000079!2.96e-07!22 | |ontology_enrichment_uberon=UBERON:0000473!1.26e-19!8;UBERON:0003135!2.41e-14!11;UBERON:0001052!3.14e-10!4;UBERON:0004907!2.33e-08!5;UBERON:0000991!1.35e-07!21;UBERON:0009196!1.35e-07!21;UBERON:0009117!1.35e-07!21;UBERON:0005564!1.35e-07!21;UBERON:0004176!2.96e-07!22;UBERON:0003101!2.96e-07!22;UBERON:0000079!2.96e-07!22 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;4.98e-21;8!UBERON:0003135;1.72e-15;11!UBERON:0000991;2.07e-08;21!UBERON:0003101;4.72e-08;22!UBERON:0000079;4.72e-08;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,4.20e-21,8;UBERON:0003135,1.52e-15,11;UBERON:0000991,1.95e-08,21;UBERON:0009196,1.95e-08,21;UBERON:0009117,1.95e-08,21;UBERON:0005564,1.95e-08,21;UBERON:0004176,4.44e-08,22;UBERON:0003101,4.44e-08,22;UBERON:0000079,4.44e-08,22 | |||
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|short_description=p@chr19:55405124..55405130,+ | |short_description=p@chr19:55405124..55405130,+ | ||
}} | }} |
Latest revision as of 17:18, 27 July 2015
Short description: | p@chr19:55405124..55405130, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:55405124..55405130, + |
Coexpression cluster: | C196_testicular_iPS_H9_teratocarcinoma_HES3GFP_choriocarcinoma_endometrial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 2.04e-41 | 7 |
germ cell | 2.04e-41 | 7 |
neuron | 1.47e-27 | 6 |
neuroblast | 1.47e-27 | 6 |
electrically signaling cell | 1.47e-27 | 6 |
neuronal stem cell | 7.25e-21 | 8 |
embryonic stem cell | 2.90e-15 | 5 |
melanocyte | 4.19e-08 | 10 |
melanoblast | 4.19e-08 | 10 |
neurectodermal cell | 1.97e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
testis | 4.20e-21 | 8 |
male reproductive organ | 1.52e-15 | 11 |
gonad | 1.95e-08 | 21 |
indifferent external genitalia | 1.95e-08 | 21 |
indifferent gonad | 1.95e-08 | 21 |
gonad primordium | 1.95e-08 | 21 |
external genitalia | 4.44e-08 | 22 |
male organism | 4.44e-08 | 22 |
male reproductive system | 4.44e-08 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.69e-13 | 22 |
germ cell cancer | 1.69e-13 | 22 |