FFCP PHASE1:Hg19::chr2:56219998..56220028,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:56219998..56220028,+ | |||
|description=CAGE_peak_at_chr2:56219998..56220028,+ | |description=CAGE_peak_at_chr2:56219998..56220028,+ | ||
|id=chr2:56219998..56220028,+ | |id=chr2:56219998..56220028,+ | ||
|ontology_enrichment_celltype=CL:0002139!9.57e-30!24;CL:0000115!3.66e-21!35;CL:0000071!5.96e-21!18;CL:0002546!5.96e-21!18;CL:0000213!7.93e-17!57;CL:0000215!7.93e-17!57;CL:0000222!1.62e-16!119;CL:0002078!1.03e-15!44;CL:0002543!1.70e-14!6;CL:0000057!8.03e-14!75;CL:0000055!3.78e-12!180;CL:0002334!2.94e-11!12;CL:0005020!1.77e-10!6;CL:0002138!1.77e-10!6;CL:0005022!1.77e-10!6;CL:0000144!1.36e-09!625;CL:0002371!9.89e-09!591;CL:0000076!3.89e-08!62;CL:0000220!3.89e-08!246;CL:0002321!5.50e-08!248;CL:0002580!7.18e-08!3;CL:0000548!8.77e-08!679;CL:0000004!8.77e-08!679;CL:0000255!8.77e-08!679;CL:0000012!1.17e-07!682;CL:0002618!1.73e-07!3;CL:0000064!3.98e-07!3;CL:0005012!3.98e-07!3;CL:0000067!3.98e-07!3;CL:0002304!3.98e-07!3;CL:1000413!5.62e-07!9 | |ontology_enrichment_celltype=CL:0002139!9.57e-30!24;CL:0000115!3.66e-21!35;CL:0000071!5.96e-21!18;CL:0002546!5.96e-21!18;CL:0000213!7.93e-17!57;CL:0000215!7.93e-17!57;CL:0000222!1.62e-16!119;CL:0002078!1.03e-15!44;CL:0002543!1.70e-14!6;CL:0000057!8.03e-14!75;CL:0000055!3.78e-12!180;CL:0002334!2.94e-11!12;CL:0005020!1.77e-10!6;CL:0002138!1.77e-10!6;CL:0005022!1.77e-10!6;CL:0000144!1.36e-09!625;CL:0002371!9.89e-09!591;CL:0000076!3.89e-08!62;CL:0000220!3.89e-08!246;CL:0002321!5.50e-08!248;CL:0002580!7.18e-08!3;CL:0000548!8.77e-08!679;CL:0000004!8.77e-08!679;CL:0000255!8.77e-08!679;CL:0000012!1.17e-07!682;CL:0002618!1.73e-07!3;CL:0000064!3.98e-07!3;CL:0005012!3.98e-07!3;CL:0000067!3.98e-07!3;CL:0002304!3.98e-07!3;CL:1000413!5.62e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0002139;7.83e-25;24!CL:0000071;2.37e-17;18!CL:0000115;1.18e-15;36!CL:0002581;1.04e-13;1!CL:1000306;1.42e-13;4!CL:0002547;1.42e-13;4!CL:0002078;1.77e-12;45!CL:0000213;1.30e-11;58!CL:0000215;1.30e-11;58!CL:0002543;2.35e-09;6!CL:0000138;2.55e-09;6!CL:0002138;3.41e-09;6!CL:0000047;1.70e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,7.44e-25,24;CL:0000115,2.98e-21,36;CL:0000071,1.97e-17,18;CL:0002546,1.97e-17,18;CL:0002078,7.42e-17,45;CL:0002581,9.73e-14,1;CL:1000306,1.95e-13,4;CL:0002547,1.95e-13,4;CL:0000213,6.63e-13,58;CL:0000215,6.63e-13,58;CL:0000058,2.16e-09,6;CL:0000138,2.16e-09,6;CL:0002543,2.56e-09,6;CL:0005020,4.03e-09,6;CL:0002138,4.03e-09,6;CL:0005022,4.03e-09,6;CL:0000222,2.70e-07,121 | |||
|ontology_enrichment_development_v019=CL:0002546;2.37e-17;18!CL:0005022;3.41e-09;6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0004638;2.37e-17;18!UBERON:0001986;2.37e-17;18!UBERON:0004852;2.37e-17;18!UBERON:0000487;3.39e-14;22!UBERON:0004797;1.42e-13;4!UBERON:0000415;1.42e-13;4!UBERON:0007240;1.42e-13;4!UBERON:0005742;1.42e-13;4!UBERON:0005734;1.42e-13;4!UBERON:0004664;1.42e-13;4!UBERON:0004663;1.42e-13;4!UBERON:0006914;1.72e-12;25!UBERON:0000055;6.10e-11;65!UBERON:0007500;2.19e-10;56!UBERON:0001981;2.19e-10;56!UBERON:0004537;2.19e-10;56!UBERON:0000490;2.31e-09;33!UBERON:0001637;1.78e-08;42!UBERON:0003509;1.78e-08;42!UBERON:0004572;1.78e-08;42!UBERON:0005406;1.70e-07;2!UBERON:0001473;4.15e-07;8!UBERON:0004536;4.15e-07;8!UBERON:0006558;4.15e-07;8 | |||
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|short_description=p@chr2:56219998..56220028,+ | |short_description=p@chr2:56219998..56220028,+ | ||
}} | }} |
Latest revision as of 11:02, 29 July 2015
Short description: | p@chr2:56219998..56220028, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:56219998..56220028, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 7.44e-25 | 24 |
endothelial cell | 2.98e-21 | 36 |
blood vessel endothelial cell | 1.97e-17 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.97e-17 | 18 |
meso-epithelial cell | 7.42e-17 | 45 |
perirenal preadipocyte | 9.73e-14 | 1 |
fibroblast of tunica adventitia of artery | 1.95e-13 | 4 |
fibroblast of the aortic adventitia | 1.95e-13 | 4 |
lining cell | 6.63e-13 | 58 |
barrier cell | 6.63e-13 | 58 |
chondroblast | 2.16e-09 | 6 |
chondrocyte | 2.16e-09 | 6 |
vein endothelial cell | 2.56e-09 | 6 |
lymphangioblast | 4.03e-09 | 6 |
endothelial cell of lymphatic vessel | 4.03e-09 | 6 |
vascular lymphangioblast | 4.03e-09 | 6 |
mesodermal cell | 2.70e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 1.97e-17 | 18 |
endothelium | 1.97e-17 | 18 |
cardiovascular system endothelium | 1.97e-17 | 18 |
vessel | 3.88e-17 | 68 |
vasculature | 8.62e-15 | 78 |
vascular system | 8.62e-15 | 78 |
simple squamous epithelium | 2.91e-14 | 22 |
artery wall | 1.95e-13 | 4 |
tunica adventitia of artery | 1.95e-13 | 4 |
adventitia | 1.95e-13 | 4 |
tunica adventitia of blood vessel | 1.95e-13 | 4 |
aorta tunica adventitia | 1.95e-13 | 4 |
aorta wall | 1.95e-13 | 4 |
epithelial tube open at both ends | 8.58e-13 | 59 |
blood vessel | 8.58e-13 | 59 |
blood vasculature | 8.58e-13 | 59 |
vascular cord | 8.58e-13 | 59 |
squamous epithelium | 1.51e-12 | 25 |
cardiovascular system | 3.07e-10 | 109 |
circulatory system | 6.23e-10 | 112 |
splanchnic layer of lateral plate mesoderm | 7.46e-09 | 83 |
blood vessel layer | 4.58e-08 | 7 |
epithelial tube | 1.30e-07 | 117 |
perirenal fat | 1.64e-07 | 2 |
artery | 1.99e-07 | 42 |
arterial blood vessel | 1.99e-07 | 42 |
arterial system | 1.99e-07 | 42 |
lymphatic vessel | 4.69e-07 | 8 |
lymph vasculature | 4.69e-07 | 8 |
lymphatic part of lymphoid system | 4.69e-07 | 8 |