FFCP PHASE1:Hg19::chr17:40557183..40557202,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:40557183..40557202,-
|short_description=p10@PTRF
|description=CAGE_peak_10_at_PTRF_5end
|association_with_transcript=107bp_to_BC004295_5end
|EntrezGene=2...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=284119 | |EntrezGene=284119 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=9688 | |HGNC=9688 | ||
|TSSclassifier=strong | |||
|UniProt=Q6NZI2 | |UniProt=Q6NZI2 | ||
|association_with_transcript=107bp_to_BC004295_5end | |||
|cluster_id=chr17:40557183..40557202,- | |||
|coexpression_cluster_id=C1434 | |||
|description=CAGE_peak_10_at_PTRF_5end | |||
|id=chr17:40557183..40557202,- | |||
|ontology_enrichment_celltype=CL:0000055!6.42e-25!180;CL:0000222!1.11e-20!119;CL:0000057!4.70e-19!75;CL:0000220!4.82e-15!246;CL:0002321!7.36e-15!248;CL:0000680!4.44e-11!57;CL:0000056!4.44e-11!57;CL:0000355!4.44e-11!57;CL:0000183!5.63e-10!59;CL:0000187!7.39e-10!54;CL:0000192!1.93e-09!42;CL:0000514!1.93e-09!42;CL:0000213!1.95e-09!57;CL:0000215!1.95e-09!57;CL:0000393!2.46e-09!60;CL:0000211!2.46e-09!60;CL:0000144!8.65e-09!625;CL:0002371!1.67e-08!591;CL:0002078!9.63e-08!44;CL:0000359!1.18e-07!32;CL:0000548!1.88e-07!679;CL:0000004!1.88e-07!679;CL:0000255!1.88e-07!679;CL:0002620!2.22e-07!23;CL:0000012!2.93e-07!682;CL:0002334!3.58e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0002334;1.38e-09;12!CL:0002559;5.78e-09;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,7.98e-14,76;CL:0000222,9.05e-12,121;CL:0002334,1.15e-09,12;CL:0002559,2.83e-09,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.17e-14!83;UBERON:0002329!2.17e-14!83;UBERON:0003077!2.17e-14!83;UBERON:0003059!2.17e-14!83;UBERON:0007282!2.17e-14!83;UBERON:0009618!2.17e-14!83;UBERON:0007285!2.17e-14!83;UBERON:0001981!4.85e-14!60;UBERON:0007500!4.85e-14!60;UBERON:0004537!4.85e-14!60;UBERON:0006965!4.85e-14!60;UBERON:0002049!5.41e-14!79;UBERON:0007798!5.41e-14!79;UBERON:0004872!5.42e-14!84;UBERON:0000486!2.59e-13!82;UBERON:0000055!3.25e-13!69;UBERON:0001637!3.80e-13!42;UBERON:0003509!3.80e-13!42;UBERON:0004572!3.80e-13!42;UBERON:0005256!4.77e-13!143;UBERON:0004290!6.07e-13!70;UBERON:0003914!3.88e-12!118;UBERON:0002100!1.84e-10!216;UBERON:0002385!2.51e-10!63;UBERON:0001015!2.51e-10!63;UBERON:0000383!2.51e-10!63;UBERON:0004535!2.87e-10!110;UBERON:0001009!6.30e-10!113;UBERON:0001134!6.37e-10!61;UBERON:0002036!6.37e-10!61;UBERON:0003082!6.37e-10!61;UBERON:0004573!7.68e-10!33;UBERON:0004571!7.68e-10!33;UBERON:0003102!8.37e-10!95;UBERON:0000490!1.86e-09!138;UBERON:0003104!2.69e-08!238;UBERON:0009142!2.69e-08!238;UBERON:0002199!1.84e-07!45;UBERON:0002416!1.84e-07!45;UBERON:0000119!2.49e-07!312;UBERON:0000483!4.52e-07!309;UBERON:0002097!5.27e-07!40;UBERON:0000475!5.77e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0002073;5.78e-09;5!UBERON:0001637;9.64e-08;42!UBERON:0003509;9.64e-08;42!UBERON:0004572;9.64e-08;42!UBERON:0007500;2.13e-07;56!UBERON:0001981;2.13e-07;56!UBERON:0004537;2.13e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007500,1.36e-12,59;UBERON:0001981,1.36e-12,59;UBERON:0004537,1.36e-12,59;UBERON:0006965,1.36e-12,59;UBERON:0002049,4.38e-12,78;UBERON:0007798,4.38e-12,78;UBERON:0000055,4.86e-11,68;UBERON:0004872,9.21e-11,83;UBERON:0001637,1.64e-10,42;UBERON:0003509,1.64e-10,42;UBERON:0004572,1.64e-10,42;UBERON:0004535,1.47e-09,109;UBERON:0002073,2.83e-09,5;UBERON:0005086,2.83e-09,5;UBERON:0001009,4.74e-09,112;UBERON:0007503,5.95e-09,78;UBERON:0003914,6.18e-09,117;UBERON:0002199,3.53e-08,46;UBERON:0002416,3.53e-08,46;UBERON:0007524,1.69e-07,73;UBERON:0000490,1.78e-07,148;UBERON:0000926,2.26e-07,315;UBERON:0004120,2.26e-07,315;UBERON:0006603,2.26e-07,315;UBERON:0003102,2.31e-07,99;UBERON:0002329,3.97e-07,71;UBERON:0003059,3.97e-07,71;UBERON:0007282,3.97e-07,71;UBERON:0004290,3.97e-07,71;UBERON:0009618,3.97e-07,71;UBERON:0003077,6.06e-07,72;UBERON:0007285,6.06e-07,72;UBERON:0005256,6.68e-07,122 | |||
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| ||
|short_description=p10@PTRF | |||
}} | }} |
Latest revision as of 14:42, 24 September 2015
Short description: | p10@PTRF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_PTRF_5end |
Coexpression cluster: | C1434_Olfactory_leiomyoma_Adipocyte_Hair_tenocyte_Preadipocyte_Smooth |
Association with transcript: | 107bp_to_BC004295_5end |
EntrezGene: | PTRF |
HGNC: | 9688 |
UniProt: | Q6NZI2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 7.98e-14 | 76 |
mesodermal cell | 9.05e-12 | 121 |
preadipocyte | 1.15e-09 | 12 |
hair follicle cell | 2.83e-09 | 5 |
Ontology term | p-value | n |
---|---|---|
epithelial tube open at both ends | 1.36e-12 | 59 |
blood vessel | 1.36e-12 | 59 |
blood vasculature | 1.36e-12 | 59 |
vascular cord | 1.36e-12 | 59 |
vasculature | 4.38e-12 | 78 |
vascular system | 4.38e-12 | 78 |
vessel | 4.86e-11 | 68 |
splanchnic layer of lateral plate mesoderm | 9.21e-11 | 83 |
artery | 1.64e-10 | 42 |
arterial blood vessel | 1.64e-10 | 42 |
arterial system | 1.64e-10 | 42 |
cardiovascular system | 1.47e-09 | 109 |
hair follicle | 2.83e-09 | 5 |
hair follicle placode | 2.83e-09 | 5 |
circulatory system | 4.74e-09 | 112 |
epithelial vesicle | 5.95e-09 | 78 |
epithelial tube | 6.18e-09 | 117 |
integument | 3.53e-08 | 46 |
integumental system | 3.53e-08 | 46 |
dense mesenchyme tissue | 1.69e-07 | 73 |
unilaminar epithelium | 1.78e-07 | 148 |
mesoderm | 2.26e-07 | 315 |
mesoderm-derived structure | 2.26e-07 | 315 |
presumptive mesoderm | 2.26e-07 | 315 |
surface structure | 2.31e-07 | 99 |
somite | 3.97e-07 | 71 |
presomitic mesoderm | 3.97e-07 | 71 |
presumptive segmental plate | 3.97e-07 | 71 |
dermomyotome | 3.97e-07 | 71 |
trunk paraxial mesoderm | 3.97e-07 | 71 |
paraxial mesoderm | 6.06e-07 | 72 |
presumptive paraxial mesoderm | 6.06e-07 | 72 |
trunk mesenchyme | 6.68e-07 | 122 |