FFCP PHASE1:Hg19::chr12:6960084..6960098,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=83461 | |EntrezGene=83461 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14624 | |HGNC=14624 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-430bp_to_ENST00000535871_5end | |association_with_transcript=-430bp_to_ENST00000535871_5end | ||
|cluster_id=chr12:6960084..6960098,- | |||
|coexpression_cluster_id=C25 | |||
|description=CAGE_peak_6_at_CDCA3_5end | |description=CAGE_peak_6_at_CDCA3_5end | ||
|id=chr12:6960084..6960098,- | |id=chr12:6960084..6960098,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002563;2.53e-16;4!CL:0002253;4.18e-09;2!CL:0002593;6.42e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,1.93e-16,4;CL:0002253,4.34e-09,2;CL:0002593,8.74e-09,2 | |||
|ontology_enrichment_development_v019=UBERON:0003104;1.93e-08;31 | |||
|ontology_enrichment_disease=DOID:162!4.77e-07!235 | |ontology_enrichment_disease=DOID:162!4.77e-07!235 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!6.01e-10!27;UBERON:0004921!7.28e-10!129;UBERON:0004185!7.28e-10!129;UBERON:0005409!8.67e-10!35;UBERON:0004119!1.65e-09!169;UBERON:0000925!1.65e-09!169;UBERON:0006595!1.65e-09!169;UBERON:0001007!3.69e-08!155;UBERON:0001555!3.69e-08!155;UBERON:0007026!3.69e-08!155;UBERON:0000077!2.66e-07!130 | |ontology_enrichment_uberon=UBERON:0000160!6.01e-10!27;UBERON:0004921!7.28e-10!129;UBERON:0004185!7.28e-10!129;UBERON:0005409!8.67e-10!35;UBERON:0004119!1.65e-09!169;UBERON:0000925!1.65e-09!169;UBERON:0006595!1.65e-09!169;UBERON:0001007!3.69e-08!155;UBERON:0001555!3.69e-08!155;UBERON:0007026!3.69e-08!155;UBERON:0000077!2.66e-07!130 | ||
|ontology_enrichment_uberon_v019=UBERON:0000160;2.73e-41;17!UBERON:0005409;2.90e-32;22!UBERON:0002108;2.19e-28;4!UBERON:0004921;1.39e-18;33!UBERON:0001052;2.53e-16;4!UBERON:0001242;2.53e-16;4!UBERON:0001262;2.53e-16;4!UBERON:0004786;2.53e-16;4!UBERON:0004808;2.53e-16;4!UBERON:0001277;2.53e-16;4!UBERON:0000059;2.89e-13;11!UBERON:0004907;2.94e-13;5!UBERON:0000485;9.73e-10;7!UBERON:0003929;9.73e-10;7!UBERON:0002456;6.42e-09;2!UBERON:0003350;1.24e-08;8!UBERON:0001555;2.88e-08;54!UBERON:0001155;7.13e-08;9!UBERON:0001007;4.18e-07;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.91e-41,17;UBERON:0005409,1.72e-28,25;UBERON:0002108,2.77e-28,4;UBERON:0001242,1.93e-16,4;UBERON:0001262,1.93e-16,4;UBERON:0004786,1.93e-16,4;UBERON:0004808,1.93e-16,4;UBERON:0001277,1.93e-16,4;UBERON:0001052,3.07e-16,4;UBERON:0000059,3.21e-13,11;UBERON:0004907,3.43e-13,5;UBERON:0002456,8.74e-09,2;UBERON:0003350,1.09e-08,8;UBERON:0001155,7.25e-08,9;UBERON:0000485,8.03e-08,9;UBERON:0004921,1.32e-07,118;UBERON:0004119,6.74e-07,160;UBERON:0000925,6.74e-07,160;UBERON:0006595,6.74e-07,160 | |||
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| ||
|short_description=p6@CDCA3 | |short_description=p6@CDCA3 | ||
}} | }} |
Latest revision as of 04:59, 20 September 2015
Short description: | p6@CDCA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_CDCA3_5end |
Coexpression cluster: | C25_small_colon_temporal_duodenum_liver_Hepatocyte_gall |
Association with transcript: | -430bp_to_ENST00000535871_5end |
EntrezGene: | CDCA3 |
HGNC: | 14624 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 1.93e-16 | 4 |
epithelial cell of large intestine | 4.34e-09 | 2 |
smooth muscle cell of the internal thoracic artery | 8.74e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
intestine | 2.91e-41 | 17 |
gastrointestinal system | 1.72e-28 | 25 |
small intestine | 2.77e-28 | 4 |
intestinal mucosa | 1.93e-16 | 4 |
wall of intestine | 1.93e-16 | 4 |
gastrointestinal system mucosa | 1.93e-16 | 4 |
gastrointestinal system epithelium | 1.93e-16 | 4 |
intestinal epithelium | 1.93e-16 | 4 |
rectum | 3.07e-16 | 4 |
large intestine | 3.21e-13 | 11 |
lower digestive tract | 3.43e-13 | 5 |
internal thoracic artery | 8.74e-09 | 2 |
epithelium of mucosa | 1.09e-08 | 8 |
colon | 7.25e-08 | 9 |
simple columnar epithelium | 8.03e-08 | 9 |
subdivision of digestive tract | 1.32e-07 | 118 |
endoderm-derived structure | 6.74e-07 | 160 |
endoderm | 6.74e-07 | 160 |
presumptive endoderm | 6.74e-07 | 160 |