FFCP PHASE1:Hg19::chr3:32858228..32858237,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:32858228..32858237,+ | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_at_chr3:32858228..32858237,+ | |description=CAGE_peak_at_chr3:32858228..32858237,+ | ||
|id=chr3:32858228..32858237,+ | |id=chr3:32858228..32858237,+ | ||
|ontology_enrichment_celltype=CL:0002322!2.35e-18!5;CL:0000039!1.12e-16!7;CL:0000586!1.12e-16!7;CL:0000047!2.55e-07!8 | |ontology_enrichment_celltype=CL:0002322!2.35e-18!5;CL:0000039!1.12e-16!7;CL:0000586!1.12e-16!7;CL:0000047!2.55e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0002322;6.88e-53;5!CL:0002321;1.16e-17;15!CL:0000540;1.24e-16;6!CL:0000404;1.24e-16;6!CL:0000182;2.14e-14;12!CL:0000148;3.87e-10;10!CL:0000147;2.20e-07;14!CL:0000039;9.65e-07;7!CL:0000586;9.65e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,6.53e-53,5;CL:0000540,1.18e-16,6;CL:0000031,1.18e-16,6;CL:0000404,1.18e-16,6;CL:0000182,2.21e-14,12;CL:0000047,1.22e-12,8;CL:0000148,3.87e-10,10;CL:0000541,3.87e-10,10;CL:0000147,2.20e-07,14;CL:0000039,9.38e-07,7;CL:0000586,9.38e-07,7 | |||
|ontology_enrichment_development_v019=CL:0000031;1.24e-16;6!UBERON:0004161;1.11e-15;11!UBERON:0009497;2.62e-13;13!UBERON:0009117;8.50e-10;10!UBERON:0005564;8.50e-10;10!UBERON:0003104;2.16e-08;31 | |||
|ontology_enrichment_disease=DOID:3095!2.54e-13!22;DOID:2994!2.54e-13!22 | |ontology_enrichment_disease=DOID:3095!2.54e-13!22;DOID:2994!2.54e-13!22 | ||
|ontology_enrichment_disease_v019=DOID:3095;9.59e-08;22!DOID:2994;9.59e-08;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,9.59e-08,22;DOID:2994,9.59e-08,22 | |||
|ontology_enrichment_uberon=UBERON:0001869!2.96e-11!32;UBERON:0002791!7.53e-11!33;UBERON:0000473!1.78e-10!8;UBERON:0002020!1.82e-10!34;UBERON:0003528!1.82e-10!34;UBERON:0001893!1.82e-10!34;UBERON:0002780!8.01e-10!41;UBERON:0001890!8.01e-10!41;UBERON:0006240!8.01e-10!41;UBERON:0003080!1.57e-09!42;UBERON:0002420!9.45e-09!9;UBERON:0007245!9.45e-09!9;UBERON:0010009!9.45e-09!9;UBERON:0010011!9.45e-09!9;UBERON:0000454!9.45e-09!9;UBERON:0000073!2.21e-08!94;UBERON:0001016!2.21e-08!94;UBERON:0000369!6.32e-08!4;UBERON:0002435!6.32e-08!4;UBERON:0000204!6.32e-08!4;UBERON:0010082!6.32e-08!4;UBERON:0003056!6.34e-08!61;UBERON:0009663!1.46e-07!7;UBERON:0005743!1.52e-07!86;UBERON:0002619!1.59e-07!22;UBERON:0003135!1.61e-07!11;UBERON:0001017!4.06e-07!82 | |ontology_enrichment_uberon=UBERON:0001869!2.96e-11!32;UBERON:0002791!7.53e-11!33;UBERON:0000473!1.78e-10!8;UBERON:0002020!1.82e-10!34;UBERON:0003528!1.82e-10!34;UBERON:0001893!1.82e-10!34;UBERON:0002780!8.01e-10!41;UBERON:0001890!8.01e-10!41;UBERON:0006240!8.01e-10!41;UBERON:0003080!1.57e-09!42;UBERON:0002420!9.45e-09!9;UBERON:0007245!9.45e-09!9;UBERON:0010009!9.45e-09!9;UBERON:0010011!9.45e-09!9;UBERON:0000454!9.45e-09!9;UBERON:0000073!2.21e-08!94;UBERON:0001016!2.21e-08!94;UBERON:0000369!6.32e-08!4;UBERON:0002435!6.32e-08!4;UBERON:0000204!6.32e-08!4;UBERON:0010082!6.32e-08!4;UBERON:0003056!6.34e-08!61;UBERON:0009663!1.46e-07!7;UBERON:0005743!1.52e-07!86;UBERON:0002619!1.59e-07!22;UBERON:0003135!1.61e-07!11;UBERON:0001017!4.06e-07!82 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;3.60e-09;19!UBERON:0006925;3.60e-09;19!UBERON:0000922;6.62e-08;49!UBERON:0002423;5.25e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.67e-09,19;UBERON:0006925,3.67e-09,19;UBERON:0008836,3.67e-09,19;UBERON:0008835,6.19e-08,22;UBERON:0003894,6.19e-08,22;UBERON:0009854,1.35e-07,23;UBERON:0007499,5.33e-07,25;UBERON:0009497,5.33e-07,25;UBERON:0000015,5.33e-07,25;UBERON:0002423,5.33e-07,25;UBERON:0006235,5.33e-07,25;UBERON:0004161,5.33e-07,25;UBERON:0009856,9.79e-07,26 | |||
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| ||
|short_description=p@chr3:32858228..32858237,+ | |short_description=p@chr3:32858228..32858237,+ | ||
}} | }} |
Latest revision as of 20:28, 29 July 2015
Short description: | p@chr3:32858228..32858237, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:32858228..32858237, + |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 6.53e-53 | 5 |
neuron | 1.18e-16 | 6 |
neuroblast | 1.18e-16 | 6 |
electrically signaling cell | 1.18e-16 | 6 |
hepatocyte | 2.21e-14 | 12 |
neuronal stem cell | 1.22e-12 | 8 |
melanocyte | 3.87e-10 | 10 |
melanoblast | 3.87e-10 | 10 |
pigment cell | 2.20e-07 | 14 |
germ line cell | 9.38e-07 | 7 |
germ cell | 9.38e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
liver | 3.67e-09 | 19 |
digestive gland | 3.67e-09 | 19 |
liver bud | 3.67e-09 | 19 |
hepatic diverticulum | 6.19e-08 | 22 |
liver primordium | 6.19e-08 | 22 |
digestive tract diverticulum | 1.35e-07 | 23 |
epithelial sac | 5.33e-07 | 25 |
epithelium of foregut-midgut junction | 5.33e-07 | 25 |
anatomical boundary | 5.33e-07 | 25 |
hepatobiliary system | 5.33e-07 | 25 |
foregut-midgut junction | 5.33e-07 | 25 |
septum transversum | 5.33e-07 | 25 |
sac | 9.79e-07 | 26 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 9.59e-08 | 22 |
germ cell cancer | 9.59e-08 | 22 |